General information for g5751.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Sialin.
Parent gene
- The parent gene g5751 is located on chr_2: 11632268..11633870 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5751 | g5751.t1 | TTS | g5751.t1 | 11632215 | 11632215 |
| chr_2 | g5751 | g5751.t1 | isoform | g5751.t1 | 11632268 | 11633870 |
| chr_2 | g5751 | g5751.t1 | exon | g5751.t1.exon1 | 11632268 | 11632447 |
| chr_2 | g5751 | g5751.t1 | cds | g5751.t1.CDS1 | 11632268 | 11632447 |
| chr_2 | g5751 | g5751.t1 | exon | g5751.t1.exon2 | 11632507 | 11632550 |
| chr_2 | g5751 | g5751.t1 | cds | g5751.t1.CDS2 | 11632507 | 11632550 |
| chr_2 | g5751 | g5751.t1 | exon | g5751.t1.exon3 | 11632609 | 11633795 |
| chr_2 | g5751 | g5751.t1 | cds | g5751.t1.CDS3 | 11632609 | 11633795 |
| chr_2 | g5751 | g5751.t1 | exon | g5751.t1.exon4 | 11633860 | 11633870 |
| chr_2 | g5751 | g5751.t1 | cds | g5751.t1.CDS4 | 11633860 | 11633870 |
| chr_2 | g5751 | g5751.t1 | TSS | g5751.t1 | 11633908 | 11633908 |
Sequences
>g5751.t1 Gene=g5751 Length=1422
ATGACAGAATTAATTGATAATACTCCATTCTTCAAGAAGAAACGCTATCTTGTTGTGTTA
ATGGCATTTTTGGGATATATTAATTTATATACATTAAGAGTCAATATGAGTGTAGCAATT
GTAGCTATGACTGATAATAAATCAATCATTCATGACGACAATAGTGAAACTTTTGAACCA
GAATTTGATTGGAGTTCAAAAGCAAAGGGTTATGTGCTAAGCTCATTTTTTTATGGATAC
ATTTGTACGCAAATTCCTGGTGGAATTTTGGCTTCAAAAATTGGTGGTCAATGGGTTTTT
GGCCTCGGAATTTTAGGAACTGCTGTTATGACTTTATTAACACCAATATTATGTTATCAA
GGAATTGGTTATCTTATTTTGTCAAGAGTTATACAAGGTATTTGCAGTGGTCTTGCTTAT
CCATCAATTAATATGGTTTATGCAAATTATATTCCTCCTATTGAACGCTCAAGAACTGCT
AGTTATGGCACGTCAGGAATATTTGTTGGTACAATTCTCGGTAATTTCTTATCAGGACTT
ATCAGTGAATATTTTGGATGGGAGTATATTTTCTATATTTTTGGAGCTGTTGCAGTTTTA
TGGTATGTTCTTTGGTATTTTACTGTCAAAAGTGGACCTGATCATGATAGTTGGATGTCA
CAAGGAGAAAGAGATTTTATTAAAAAAAGTATTGCGAGTCAATCTGGAAATAAAGCTCAA
ACAACAAAAACTCCATGGAAAGCAATATTTACTTCTATTCCAGTATATGCTATAGCAATT
TCACATTTTTCATATAACTGGGGTTATTACACTATGTTAACTCAATTGCCTATGTATATG
CGTGATATTCTTGATTTTGATGTAACAAAAAGTGGTTTCTTGAGTGCACTTCCTTATTTA
GTACAAACAATTATTGTGTATATTTCTGGATTTTTAGCAGATTTTGTTCAAAAAAAGAAC
ATTTTAACTACAACTCAAGTGCGAAAATATTTCAATACAACATCATTTGTGTCACAAACA
ATTTTTCTTCTTATCGCTGCATTTGTATCAAACACACCAACAATTGTTGCATGCATTTCT
ATGACAGTAGGAATTGGTGCTCTTGCAATGTCTGGATGGCTTGCAAATACACTCGATATA
GCTCCACAATTTGGAAGTATAATTTTAGGAATATCAAATACTTTGGCAACATTACCTGGC
ATAGTATCACCAATATTATCAGGATATATAGCTTCAACACCTAATTCATTTGAATATCGA
ATTATATTCATTATCACATGTGCAATTGGTGTTGCAGGCATGACATTCTATTTATTCTTT
GCAAGTGCAGAATTACAACCATGGGCTGTTGTAGAATCTAATGGTGACATTGAAAAAAAT
AAAAATACTGACAAAAAAGCCAAAAATAAATTTAAGGAATAG
>g5751.t1 Gene=g5751 Length=473
MTELIDNTPFFKKKRYLVVLMAFLGYINLYTLRVNMSVAIVAMTDNKSIIHDDNSETFEP
EFDWSSKAKGYVLSSFFYGYICTQIPGGILASKIGGQWVFGLGILGTAVMTLLTPILCYQ
GIGYLILSRVIQGICSGLAYPSINMVYANYIPPIERSRTASYGTSGIFVGTILGNFLSGL
ISEYFGWEYIFYIFGAVAVLWYVLWYFTVKSGPDHDSWMSQGERDFIKKSIASQSGNKAQ
TTKTPWKAIFTSIPVYAIAISHFSYNWGYYTMLTQLPMYMRDILDFDVTKSGFLSALPYL
VQTIIVYISGFLADFVQKKNILTTTQVRKYFNTTSFVSQTIFLLIAAFVSNTPTIVACIS
MTVGIGALAMSGWLANTLDIAPQFGSIILGISNTLATLPGIVSPILSGYIASTPNSFEYR
IIFIITCAIGVAGMTFYLFFASAELQPWAVVESNGDIEKNKNTDKKAKNKFKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 32 | g5751.t1 | CDD | cd17318 | MFS_SLC17 | 20 | 441 | 2.72919E-144 |
| 5 | g5751.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 9 | 220 | 1.1E-39 |
| 6 | g5751.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 241 | 446 | 5.0E-29 |
| 2 | g5751.t1 | PANTHER | PTHR11662 | SOLUTE CARRIER FAMILY 17 | 11 | 458 | 1.4E-148 |
| 3 | g5751.t1 | PANTHER | PTHR11662:SF437 | GH23975P | 11 | 458 | 1.4E-148 |
| 1 | g5751.t1 | Pfam | PF07690 | Major Facilitator Superfamily | 20 | 323 | 3.2E-48 |
| 12 | g5751.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 15 | - |
| 24 | g5751.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 16 | 33 | - |
| 15 | g5751.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 34 | 70 | - |
| 23 | g5751.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 71 | 91 | - |
| 8 | g5751.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 92 | 97 | - |
| 29 | g5751.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 98 | 116 | - |
| 17 | g5751.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 117 | 121 | - |
| 30 | g5751.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 122 | 147 | - |
| 7 | g5751.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 148 | 158 | - |
| 28 | g5751.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 159 | 177 | - |
| 16 | g5751.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 178 | 188 | - |
| 27 | g5751.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 189 | 209 | - |
| 11 | g5751.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 210 | 247 | - |
| 31 | g5751.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 248 | 270 | - |
| 14 | g5751.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 271 | 295 | - |
| 20 | g5751.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 296 | 317 | - |
| 10 | g5751.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 318 | 328 | - |
| 22 | g5751.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 329 | 348 | - |
| 19 | g5751.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 349 | 353 | - |
| 26 | g5751.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 354 | 375 | - |
| 13 | g5751.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 376 | 386 | - |
| 21 | g5751.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 387 | 411 | - |
| 18 | g5751.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 412 | 416 | - |
| 25 | g5751.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 417 | 440 | - |
| 9 | g5751.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 441 | 473 | - |
| 45 | g5751.t1 | ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 17 | 445 | 26.372 |
| 4 | g5751.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 8 | 442 | 6.28E-75 |
| 36 | g5751.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 15 | 37 | - |
| 38 | g5751.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 70 | 92 | - |
| 34 | g5751.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 97 | 119 | - |
| 40 | g5751.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 126 | 148 | - |
| 39 | g5751.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 158 | 180 | - |
| 43 | g5751.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 187 | 209 | - |
| 44 | g5751.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 248 | 270 | - |
| 42 | g5751.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 291 | 313 | - |
| 35 | g5751.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 333 | 350 | - |
| 41 | g5751.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 355 | 377 | - |
| 37 | g5751.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 387 | 409 | - |
| 33 | g5751.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 421 | 443 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5751/g5751.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5751.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
- This transcript has been annotated with K08193 (MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed