General information for g5752.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g5752 is located on chr_2: 11665148..11666050 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5752 | g5752.t13 | isoform | g5752.t13 | 11665148 | 11666050 |
| chr_2 | g5752 | g5752.t13 | exon | g5752.t13.exon1 | 11665148 | 11665383 |
| chr_2 | g5752 | g5752.t13 | cds | g5752.t13.CDS1 | 11665198 | 11665383 |
| chr_2 | g5752 | g5752.t13 | exon | g5752.t13.exon2 | 11665448 | 11666050 |
| chr_2 | g5752 | g5752.t13 | cds | g5752.t13.CDS2 | 11665448 | 11666050 |
| chr_2 | g5752 | g5752.t13 | TSS | g5752.t13 | NA | NA |
| chr_2 | g5752 | g5752.t13 | TTS | g5752.t13 | NA | NA |
Sequences
>g5752.t13 Gene=g5752 Length=839
GTGTTGTTCTTTGGGAATTATTTACCTTAGGTAAAGTTCCTTACACAGGAATGGAAGCTA
ACCAAGAGTTGTTCTACAAACTTCGTGATGGTTATCGAATGGAAAAGCCAAAATATGCAA
CACAAGATTTATATGATATCATGCTCAATTGTTGGAATGCAAAACCAGAGTCTCGTCCAT
TGTTTAATGAATTAGAACGTAAATTGAGTTCATTTATGATGGATAGCGTCAAAGATCACT
ATTTAGATCTCAATGAGCCATACATGCAAGCAAATACAAAAAGTTATGAAAGTGGGGTGC
CTGATTATTTAACACAAATGTCAATTCCCGAAGGTGAAGCACCAAAGCCACCATTGGCTC
AAGAGGAAATGTTTAGTATTGATAACAGTACAACAAATGTTCCATCCACACCAGATTACC
TTTCAATGAGTCCTAAGAGTGGTGTGGTAAAATATAATTTACGACCAGATTCACCAACAA
TAGCTAAAAATTTAGATACTAGTCCGAAAAACAAAAAGAATGTAAATAAGAAACCTGAAC
TTCCTGAAGAAATTCCTATGCTCGCTTACAATCAAAATGGCTTGCCAATTCATGACTCAG
ATGAAGAGCAGGTAAATACATATACAGATATGAAAATAAGACGAAATAGCAGTGGAAGAA
AGAAACGACAAGCACCACAGCCGCCAGTGGCAGCTTCAACAAATCAAAATTCAGATCCCG
AATATAAAAATATTTTTGCACCTAGTGACAACTATGTGAACGTTCCAGCTGTTAATAAAA
ATGCATCTGTTGCTAATCCAGCTTATATCACTTTTCAATCTGTTAATGAAAGAGCTTAA
>g5752.t13 Gene=g5752 Length=262
MEANQELFYKLRDGYRMEKPKYATQDLYDIMLNCWNAKPESRPLFNELERKLSSFMMDSV
KDHYLDLNEPYMQANTKSYESGVPDYLTQMSIPEGEAPKPPLAQEEMFSIDNSTTNVPST
PDYLSMSPKSGVVKYNLRPDSPTIAKNLDTSPKNKKNVNKKPELPEEIPMLAYNQNGLPI
HDSDEEQVNTYTDMKIRRNSSGRKKRQAPQPPVAASTNQNSDPEYKNIFAPSDNYVNVPA
VNKNASVANPAYITFQSVNERA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g5752.t13 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 83 | 5.6E-9 |
| 5 | g5752.t13 | MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 164 | - |
| 7 | g5752.t13 | MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 227 | - |
| 6 | g5752.t13 | MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 227 | - |
| 2 | g5752.t13 | PANTHER | PTHR24416:SF52 | PLATELET-DERIVED GROWTH FACTOR RECEPTOR ALPHA | 8 | 79 | 7.0E-12 |
| 3 | g5752.t13 | PANTHER | PTHR24416 | TYROSINE-PROTEIN KINASE RECEPTOR | 8 | 79 | 7.0E-12 |
| 1 | g5752.t13 | Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 4 | 52 | 6.0E-11 |
| 4 | g5752.t13 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 4 | 76 | 1.17E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5752/g5752.t13; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5752.t13.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
