General information for g5752.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Vascular endothelial growth factor receptor 1.
Parent gene
- The parent gene g5752 is located on chr_2: 11665148..11666050 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5752 | g5752.t3 | isoform | g5752.t3 | 11656329 | 11666050 |
| chr_2 | g5752 | g5752.t3 | exon | g5752.t3.exon1 | 11656329 | 11656407 |
| chr_2 | g5752 | g5752.t3 | cds | g5752.t3.CDS1 | 11656329 | 11656407 |
| chr_2 | g5752 | g5752.t3 | exon | g5752.t3.exon2 | 11656723 | 11656850 |
| chr_2 | g5752 | g5752.t3 | cds | g5752.t3.CDS2 | 11656723 | 11656850 |
| chr_2 | g5752 | g5752.t3 | exon | g5752.t3.exon3 | 11656907 | 11657159 |
| chr_2 | g5752 | g5752.t3 | cds | g5752.t3.CDS3 | 11656907 | 11657159 |
| chr_2 | g5752 | g5752.t3 | exon | g5752.t3.exon4 | 11657225 | 11657352 |
| chr_2 | g5752 | g5752.t3 | cds | g5752.t3.CDS4 | 11657225 | 11657352 |
| chr_2 | g5752 | g5752.t3 | exon | g5752.t3.exon5 | 11658009 | 11658150 |
| chr_2 | g5752 | g5752.t3 | cds | g5752.t3.CDS5 | 11658009 | 11658150 |
| chr_2 | g5752 | g5752.t3 | exon | g5752.t3.exon6 | 11660153 | 11660797 |
| chr_2 | g5752 | g5752.t3 | cds | g5752.t3.CDS6 | 11660153 | 11660797 |
| chr_2 | g5752 | g5752.t3 | exon | g5752.t3.exon7 | 11660976 | 11661133 |
| chr_2 | g5752 | g5752.t3 | cds | g5752.t3.CDS7 | 11660976 | 11661133 |
| chr_2 | g5752 | g5752.t3 | exon | g5752.t3.exon8 | 11661518 | 11662101 |
| chr_2 | g5752 | g5752.t3 | cds | g5752.t3.CDS8 | 11661518 | 11662101 |
| chr_2 | g5752 | g5752.t3 | exon | g5752.t3.exon9 | 11662427 | 11662602 |
| chr_2 | g5752 | g5752.t3 | cds | g5752.t3.CDS9 | 11662427 | 11662602 |
| chr_2 | g5752 | g5752.t3 | exon | g5752.t3.exon10 | 11662780 | 11663431 |
| chr_2 | g5752 | g5752.t3 | cds | g5752.t3.CDS10 | 11662780 | 11663431 |
| chr_2 | g5752 | g5752.t3 | exon | g5752.t3.exon11 | 11664334 | 11664482 |
| chr_2 | g5752 | g5752.t3 | cds | g5752.t3.CDS11 | 11664334 | 11664482 |
| chr_2 | g5752 | g5752.t3 | exon | g5752.t3.exon12 | 11664542 | 11664907 |
| chr_2 | g5752 | g5752.t3 | cds | g5752.t3.CDS12 | 11664542 | 11664907 |
| chr_2 | g5752 | g5752.t3 | exon | g5752.t3.exon13 | 11665148 | 11665383 |
| chr_2 | g5752 | g5752.t3 | cds | g5752.t3.CDS13 | 11665148 | 11665383 |
| chr_2 | g5752 | g5752.t3 | exon | g5752.t3.exon14 | 11665448 | 11666050 |
| chr_2 | g5752 | g5752.t3 | cds | g5752.t3.CDS14 | 11665448 | 11666050 |
| chr_2 | g5752 | g5752.t3 | TSS | g5752.t3 | NA | NA |
| chr_2 | g5752 | g5752.t3 | TTS | g5752.t3 | NA | NA |
Sequences
>g5752.t3 Gene=g5752 Length=4299
ATGTTTAAGCAGCTACCGGTGCTTCTCTTCATTGTGCAACTATGGATGGAAATGCATTTA
AGTGTCACGGCATTGATCGCACCAAATCCACTTCGAGGCTATCATGGTGCTCCAATAATT
GATCCCTTTGATTCTGTAATAATTGATGTAAATGGTAAAAAATTAATTGAATGTAAAGGA
AAAAGACCTGTTACATGGTTGTCTGAGATAATCAATAAATATCCAGATAATGCCAAAGTT
TCACATTTTTTATATGATAGTAAAGATGATGATTCAATTTTATTTACTGATGAGCAAAAT
CTCTATCGAACTAATTTGGAATTAAGTGAAGTTACAGTAGATTTTGTTGGAGAATATTAT
TGCGTATTTAATGACACAATTAATGACGATCCAAATGACTTTGATTATGAAGAAAAAATC
ATAAATTATGAAGCATCGAGTATTTACGTTTTTGTCAATGATCCAGAGAATCTATTATAT
GAACATCATCAGAACATTATATGGGGTAGACAATATGAACCATTTGTGATTCCATGTAAA
CCAACATCACCTCAAGTTAGAGTGGAATTAAAAAATGAAGATGGACAGCACCATTATGTA
GGAACATATGACCCAAAACGTGGATTTATAGTTTCATTTCATGATGTTGAAAGTAGCGGA
TTTTATGAGTGTTTAATAGCAGATGATCCTTCAATTTTCACACAATTTCAAGTAATTATA
AATGAACAATCACTGTCGGCGTATATTAAAAAACCAATCATCACGAGTGAAACTGACTTT
TACGCAAGAGATGGTGACCAGTTGCAAATAACTTGTCATGTAGAATTAGAAAATGATGTT
GCTTACAGTGTCTTCTTCACTTTGCCTAACGGAAAAGTTGTCAATGAAACAAGTGATTTT
GTTGAGTTATCACAATTGAAGCATGAACATGATAATCGAAAAAAATCTCACATTACTTTA
ACAATCGATCATGCTGAAGCTACAAGAGACAAAGGCGATTATACTTGTACTGTTAAAGAC
TTGTATGAAAATTCAAACTCAGTTGCTGCTACAATAGTTTTTGTTAATGAACCAATAATG
GAATGGAAACCTGCAAATCAAAATATCACAACAAATCAAGGAAAGAAAAGAGTTCAATTT
TTAATTGAATATGTTGCTTATCCAGAAGCAACTTTTGAAGTTTACAACAATCATAATGAA
CTTATTGCAAGAGGAACTGATGTAATTAATCGTGAAAAATATGATGTTGTTATAAGCAAA
ATTGAAATTAAATTTGTTGTAAAATCTCCAAATATTAAAGACTTTGGTGAATATACAATA
TTAGCAACAACTGATGGAAAAAATTACACACAAAAACTTTATTTGACTGTAGCAGAAAAA
CCAACATGCACAATGGAAGATGTTTACATAGAAGTAGGACAGGAAGTGAATATGAGATGC
GAATGTCAAGCATATCCTCTAGCTGAAATGTCATGGTCATTTCAAGAATGCTCAAATTTA
TCGACATGGCCCGAATGTGGACGACAAAGAAATGATGAAGGTGAAGAAAATAAAGCAGAA
AGTGAAGCAAAATCGGATTTTGCTCAAGTTTTATCAATTCGATTCACACCAAATCGACCT
GGAACAGTTACTTGCAGAGCTAGAAATAAAATTGATACTGCAAGAGCAACAGCATATGCA
AAAATTGGTGACTTACCTGAACCTTTTATGATAACTGGCCTTAGAGATGACCATCAAATT
GCACATGGTGATTTAGTTGAACTTGAATGTGGTGCAATAATTTACAATTATTCAGATTCA
ATTCAATGGACAAAAGATGGAAATGTTTTAGAAAATGGTGATGGAATTGAAATTTCTGAC
AGTCACACGGAATATTCATGGCGAAAAAGATTAATTTTAAATGCAATAAAACATGAACAT
GATGGTGAATACAACTGTGAAGTTAAAGAGAAAAATTCTGAAGAAATAAAATCATTGCCT
GTTAGCATTCGAGTAAATGATGCAATTGCTCCTCAAATAACTCCAAATTTCAATGATTCG
ACAATCACAAAACCTCTTGGAGAGATGCTGAGACTTGAATGTTTTATTACTGGTCTTCCT
ACACCTAAATTATCATGGAAAAAAGATGGAGAAATTTTTCAAATTGATAAAAATGATTCA
AGAGTTACAATGACAAATAATGATATGACTTTGGCATTTTCGGTATTGAAACCTGAAGAC
AGTGGAGTGTATGAATGCATAGCAGAAAATCGAATTGCGACTGAAAGAAAACAAGTAGAT
GTTGTGATAACAACACCATCAACACCAGTCAATAAGGCAATTATCATTGGCGTCATTACA
ATTATTCTCGTACTTGTGTTGCTGTCACTTTATTTATGTCTAAAAGTTCGTATTAAAAAG
CGACAAATCGCAATGTTAAAAGCTGCTGGTCTCGCCAATTTCGAGGAAGGTCAAGTTGAA
AGCATTGACCCAGACGTTAATATTGATGAGCAAGCTGATTTGCTGCCATATGATAAAAAG
TTTGAATTTCCTCGTGAGAAATTAAAGTTGGGAAAGCAGTTAGGTGCAGGTGCATTTGGT
GTGGTTGTGAAAGCAACAGCTCAAGGTATTTTACATTATGAAGAAGAAACAACAGTTGCT
GTAAAAATGGTCAAGAAACAAACCGATAACGAAGTGATGAAAGCTCTTGTGTCAGAGCTT
AAAATTATGATTCACATGGGACAGCATTTAAATGTGGTAAATTTATTAGGCGCTGTGACA
AAAAATATAGCCAAGCGTGAGCTCATGGTTATAGTCGAGTACTGTCGCTTTGGTAATCTT
CAGAGTTTCCTCGTTAAACATCGTCCTTATTTCATTGACCAAGTGAGAAATGACCGAATT
GATCCAATGATTATGAAAAATGAAATGCGATGGTCGAAAAACAGTGCATATAATTCTTTT
AACAGTGAAGGAAATCAATATACACCCCAACTTAATTTGGGCGTATCAAATCCTGCTGCA
CATATGAACACACAAGGATATGTGAGACATTCCGGATTTCATCAAGTTGATAGCTGTAAT
ACAGAAGCAACTGTTGTCTCTAATATGGAAACTGGTGAAGATAATGCTTTGCTATCAAAT
AATTCTGATCAACCTTTATGGAGATCAAATTATGGAGCAGACTACAAAGGACCAGCAAGA
ACTGTTTGTACATCTGATTTAGTCTGTTGGGCTTTTCAAGTTGCACGTGGCATGGATTAT
TTAGCTACAAGAAAAGTTTTACATGGAGATCTTGCAGCAAGAAATATTTTATTGTGCGAT
GATAATATTGTGAAAATTTGTGACTTCGGTCTAGCTCGTTCGATGTATAAGAATGACAAT
TATAAGAAGAAAGGTGAAGCACCTCTTCCATTTAAATGGCTCAGTATTGAAGCGATTTCT
GATCATGTGTTCTCAACTTATTCCGATGTATGGGCTTATGGTGTTGTTCTTTGGGAATTA
TTTACCTTAGGTAAAGTTCCTTACACAGGAATGGAAGCTAACCAAGAGTTGTTCTACAAA
CTTCGTGATGGTTATCGAATGGAAAAGCCAAAATATGCAACACAAGATTTATATGATATC
ATGCTCAATTGTTGGAATGCAAAACCAGAGTCTCGTCCATTGTTTAATGAATTAGAACGT
AAATTGAGTTCATTTATGATGGATAGCGTCAAAGATCACTATTTAGATCTCAATGAGCCA
TACATGCAAGCAAATACAAAAAGTTATGAAAGTGGGGTGCCTGATTATTTAACACAAATG
TCAATTCCCGAAGGTGAAGCACCAAAGCCACCATTGGCTCAAGAGGAAATGTTTAGTATT
GATAACAGTACAACAAATGTTCCATCCACACCAGATTACCTTTCAATGAGTCCTAAGAGT
GGTGTGGTAAAATATAATTTACGACCAGATTCACCAACAATAGCTAAAAATTTAGATACT
AGTCCGAAAAACAAAAAGAATGTAAATAAGAAACCTGAACTTCCTGAAGAAATTCCTATG
CTCGCTTACAATCAAAATGGCTTGCCAATTCATGACTCAGATGAAGAGCAGGTAAATACA
TATACAGATATGAAAATAAGACGAAATAGCAGTGGAAGAAAGAAACGACAAGCACCACAG
CCGCCAGTGGCAGCTTCAACAAATCAAAATTCAGATCCCGAATATAAAAATATTTTTGCA
CCTAGTGACAACTATGTGAACGTTCCAGCTGTTAATAAAAATGCATCTGTTGCTAATCCA
GCTTATATCACTTTTCAATCTGTTAATGAAAGAGCTTAA
>g5752.t3 Gene=g5752 Length=1432
MFKQLPVLLFIVQLWMEMHLSVTALIAPNPLRGYHGAPIIDPFDSVIIDVNGKKLIECKG
KRPVTWLSEIINKYPDNAKVSHFLYDSKDDDSILFTDEQNLYRTNLELSEVTVDFVGEYY
CVFNDTINDDPNDFDYEEKIINYEASSIYVFVNDPENLLYEHHQNIIWGRQYEPFVIPCK
PTSPQVRVELKNEDGQHHYVGTYDPKRGFIVSFHDVESSGFYECLIADDPSIFTQFQVII
NEQSLSAYIKKPIITSETDFYARDGDQLQITCHVELENDVAYSVFFTLPNGKVVNETSDF
VELSQLKHEHDNRKKSHITLTIDHAEATRDKGDYTCTVKDLYENSNSVAATIVFVNEPIM
EWKPANQNITTNQGKKRVQFLIEYVAYPEATFEVYNNHNELIARGTDVINREKYDVVISK
IEIKFVVKSPNIKDFGEYTILATTDGKNYTQKLYLTVAEKPTCTMEDVYIEVGQEVNMRC
ECQAYPLAEMSWSFQECSNLSTWPECGRQRNDEGEENKAESEAKSDFAQVLSIRFTPNRP
GTVTCRARNKIDTARATAYAKIGDLPEPFMITGLRDDHQIAHGDLVELECGAIIYNYSDS
IQWTKDGNVLENGDGIEISDSHTEYSWRKRLILNAIKHEHDGEYNCEVKEKNSEEIKSLP
VSIRVNDAIAPQITPNFNDSTITKPLGEMLRLECFITGLPTPKLSWKKDGEIFQIDKNDS
RVTMTNNDMTLAFSVLKPEDSGVYECIAENRIATERKQVDVVITTPSTPVNKAIIIGVIT
IILVLVLLSLYLCLKVRIKKRQIAMLKAAGLANFEEGQVESIDPDVNIDEQADLLPYDKK
FEFPREKLKLGKQLGAGAFGVVVKATAQGILHYEEETTVAVKMVKKQTDNEVMKALVSEL
KIMIHMGQHLNVVNLLGAVTKNIAKRELMVIVEYCRFGNLQSFLVKHRPYFIDQVRNDRI
DPMIMKNEMRWSKNSAYNSFNSEGNQYTPQLNLGVSNPAAHMNTQGYVRHSGFHQVDSCN
TEATVVSNMETGEDNALLSNNSDQPLWRSNYGADYKGPARTVCTSDLVCWAFQVARGMDY
LATRKVLHGDLAARNILLCDDNIVKICDFGLARSMYKNDNYKKKGEAPLPFKWLSIEAIS
DHVFSTYSDVWAYGVVLWELFTLGKVPYTGMEANQELFYKLRDGYRMEKPKYATQDLYDI
MLNCWNAKPESRPLFNELERKLSSFMMDSVKDHYLDLNEPYMQANTKSYESGVPDYLTQM
SIPEGEAPKPPLAQEEMFSIDNSTTNVPSTPDYLSMSPKSGVVKYNLRPDSPTIAKNLDT
SPKNKKNVNKKPELPEEIPMLAYNQNGLPIHDSDEEQVNTYTDMKIRRNSSGRKKRQAPQ
PPVAASTNQNSDPEYKNIFAPSDNYVNVPAVNKNASVANPAYITFQSVNERA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 38 | g5752.t3 | CDD | cd00096 | Ig | 586 | 649 | 1.5667E-4 |
| 37 | g5752.t3 | CDD | cd00096 | Ig | 690 | 759 | 3.5247E-13 |
| 21 | g5752.t3 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 7 | 154 | 1.1E-8 |
| 23 | g5752.t3 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 155 | 241 | 5.1E-13 |
| 20 | g5752.t3 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 249 | 353 | 5.4E-8 |
| 19 | g5752.t3 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 354 | 459 | 2.7E-5 |
| 24 | g5752.t3 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 462 | 564 | 2.0E-8 |
| 25 | g5752.t3 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 565 | 663 | 1.1E-9 |
| 22 | g5752.t3 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 664 | 764 | 1.2E-17 |
| 26 | g5752.t3 | Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 807 | 934 | 4.3E-37 |
| 27 | g5752.t3 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1039 | 1235 | 2.3E-52 |
| 54 | g5752.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1313 | 1334 | - |
| 53 | g5752.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1365 | 1396 | - |
| 52 | g5752.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1381 | 1396 | - |
| 8 | g5752.t3 | PANTHER | PTHR24416:SF45 | VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 | 41 | 403 | 1.8E-132 |
| 12 | g5752.t3 | PANTHER | PTHR24416 | TYROSINE-PROTEIN KINASE RECEPTOR | 41 | 403 | 1.8E-132 |
| 6 | g5752.t3 | PANTHER | PTHR24416:SF45 | VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 | 580 | 766 | 1.8E-132 |
| 10 | g5752.t3 | PANTHER | PTHR24416 | TYROSINE-PROTEIN KINASE RECEPTOR | 580 | 766 | 1.8E-132 |
| 5 | g5752.t3 | PANTHER | PTHR24416:SF45 | VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 | 774 | 954 | 1.8E-132 |
| 9 | g5752.t3 | PANTHER | PTHR24416 | TYROSINE-PROTEIN KINASE RECEPTOR | 774 | 954 | 1.8E-132 |
| 7 | g5752.t3 | PANTHER | PTHR24416:SF45 | VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 | 1045 | 1230 | 1.8E-132 |
| 11 | g5752.t3 | PANTHER | PTHR24416 | TYROSINE-PROTEIN KINASE RECEPTOR | 1045 | 1230 | 1.8E-132 |
| 35 | g5752.t3 | PIRSF | PIRSF000615 | TyrPK_CSF1-R | 10 | 573 | 4.6E-41 |
| 36 | g5752.t3 | PIRSF | PIRSF000615 | TyrPK_CSF1-R | 566 | 1290 | 1.6E-136 |
| 1 | g5752.t3 | Pfam | PF00047 | Immunoglobulin domain | 261 | 347 | 2.8E-5 |
| 4 | g5752.t3 | Pfam | PF07679 | Immunoglobulin I-set domain | 575 | 659 | 5.1E-6 |
| 3 | g5752.t3 | Pfam | PF07679 | Immunoglobulin I-set domain | 685 | 761 | 7.8E-13 |
| 2 | g5752.t3 | Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 848 | 1222 | 2.5E-92 |
| 30 | g5752.t3 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 33 | - |
| 31 | g5752.t3 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 32 | g5752.t3 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 15 | - |
| 34 | g5752.t3 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 33 | - |
| 29 | g5752.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 34 | 772 | - |
| 33 | g5752.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 773 | 794 | - |
| 28 | g5752.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 795 | 1432 | - |
| 51 | g5752.t3 | ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 854 | 886 | - |
| 50 | g5752.t3 | ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 1086 | 1098 | - |
| 58 | g5752.t3 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 252 | 353 | 7.758 |
| 57 | g5752.t3 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 461 | 563 | 7.577 |
| 55 | g5752.t3 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 566 | 662 | 11.225 |
| 56 | g5752.t3 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 671 | 764 | 14.002 |
| 59 | g5752.t3 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 848 | 1226 | 37.22 |
| 44 | g5752.t3 | SMART | SM00409 | IG_3c | 43 | 153 | 2.1 |
| 43 | g5752.t3 | SMART | SM00409 | IG_3c | 164 | 241 | 24.0 |
| 42 | g5752.t3 | SMART | SM00409 | IG_3c | 257 | 354 | 0.2 |
| 47 | g5752.t3 | SMART | SM00408 | igc2_5 | 263 | 343 | 0.065 |
| 45 | g5752.t3 | SMART | SM00409 | IG_3c | 465 | 561 | 55.0 |
| 41 | g5752.t3 | SMART | SM00409 | IG_3c | 575 | 666 | 3.5E-4 |
| 48 | g5752.t3 | SMART | SM00408 | igc2_5 | 581 | 653 | 9.3E-6 |
| 46 | g5752.t3 | SMART | SM00409 | IG_3c | 679 | 764 | 6.5E-6 |
| 49 | g5752.t3 | SMART | SM00408 | igc2_5 | 685 | 753 | 2.0E-10 |
| 13 | g5752.t3 | SUPERFAMILY | SSF48726 | Immunoglobulin | 252 | 457 | 4.66E-6 |
| 14 | g5752.t3 | SUPERFAMILY | SSF48726 | Immunoglobulin | 458 | 569 | 8.41E-7 |
| 16 | g5752.t3 | SUPERFAMILY | SSF48726 | Immunoglobulin | 570 | 658 | 1.28E-9 |
| 15 | g5752.t3 | SUPERFAMILY | SSF48726 | Immunoglobulin | 680 | 760 | 2.95E-16 |
| 17 | g5752.t3 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 835 | 1219 | 8.33E-68 |
| 18 | g5752.t3 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 24 | - |
| 39 | g5752.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 773 | 795 | - |
| 40 | g5752.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 854 | 873 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5752/g5752.t3; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5752.t3.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
- This transcript has been annotated with K05096 (FMS-like tyrosine kinase 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
