General information for g5752.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Vascular endothelial growth factor receptor 1.
Parent gene
- The parent gene g5752 is located on chr_2: 11665148..11666050 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5752 | g5752.t6 | isoform | g5752.t6 | 11656329 | 11666050 |
| chr_2 | g5752 | g5752.t6 | exon | g5752.t6.exon1 | 11656329 | 11656407 |
| chr_2 | g5752 | g5752.t6 | cds | g5752.t6.CDS1 | 11656329 | 11656407 |
| chr_2 | g5752 | g5752.t6 | exon | g5752.t6.exon2 | 11656723 | 11656850 |
| chr_2 | g5752 | g5752.t6 | cds | g5752.t6.CDS2 | 11656723 | 11656850 |
| chr_2 | g5752 | g5752.t6 | exon | g5752.t6.exon3 | 11656907 | 11657159 |
| chr_2 | g5752 | g5752.t6 | cds | g5752.t6.CDS3 | 11656907 | 11657159 |
| chr_2 | g5752 | g5752.t6 | exon | g5752.t6.exon4 | 11657225 | 11657352 |
| chr_2 | g5752 | g5752.t6 | cds | g5752.t6.CDS4 | 11657225 | 11657352 |
| chr_2 | g5752 | g5752.t6 | exon | g5752.t6.exon5 | 11658009 | 11658150 |
| chr_2 | g5752 | g5752.t6 | cds | g5752.t6.CDS5 | 11658009 | 11658150 |
| chr_2 | g5752 | g5752.t6 | exon | g5752.t6.exon6 | 11658253 | 11658345 |
| chr_2 | g5752 | g5752.t6 | cds | g5752.t6.CDS6 | 11658253 | 11658345 |
| chr_2 | g5752 | g5752.t6 | exon | g5752.t6.exon7 | 11660153 | 11660797 |
| chr_2 | g5752 | g5752.t6 | cds | g5752.t6.CDS7 | 11660153 | 11660797 |
| chr_2 | g5752 | g5752.t6 | exon | g5752.t6.exon8 | 11660976 | 11661133 |
| chr_2 | g5752 | g5752.t6 | cds | g5752.t6.CDS8 | 11660976 | 11661133 |
| chr_2 | g5752 | g5752.t6 | exon | g5752.t6.exon9 | 11661518 | 11662101 |
| chr_2 | g5752 | g5752.t6 | cds | g5752.t6.CDS9 | 11661518 | 11662101 |
| chr_2 | g5752 | g5752.t6 | exon | g5752.t6.exon10 | 11662427 | 11662602 |
| chr_2 | g5752 | g5752.t6 | cds | g5752.t6.CDS10 | 11662427 | 11662602 |
| chr_2 | g5752 | g5752.t6 | exon | g5752.t6.exon11 | 11662780 | 11663431 |
| chr_2 | g5752 | g5752.t6 | cds | g5752.t6.CDS11 | 11662780 | 11663431 |
| chr_2 | g5752 | g5752.t6 | exon | g5752.t6.exon12 | 11664334 | 11664482 |
| chr_2 | g5752 | g5752.t6 | cds | g5752.t6.CDS12 | 11664334 | 11664482 |
| chr_2 | g5752 | g5752.t6 | exon | g5752.t6.exon13 | 11664536 | 11664907 |
| chr_2 | g5752 | g5752.t6 | cds | g5752.t6.CDS13 | 11664536 | 11664907 |
| chr_2 | g5752 | g5752.t6 | exon | g5752.t6.exon14 | 11665148 | 11665383 |
| chr_2 | g5752 | g5752.t6 | cds | g5752.t6.CDS14 | 11665148 | 11665383 |
| chr_2 | g5752 | g5752.t6 | exon | g5752.t6.exon15 | 11665448 | 11666050 |
| chr_2 | g5752 | g5752.t6 | cds | g5752.t6.CDS15 | 11665448 | 11666050 |
| chr_2 | g5752 | g5752.t6 | TSS | g5752.t6 | NA | NA |
| chr_2 | g5752 | g5752.t6 | TTS | g5752.t6 | NA | NA |
Sequences
>g5752.t6 Gene=g5752 Length=4398
ATGTTTAAGCAGCTACCGGTGCTTCTCTTCATTGTGCAACTATGGATGGAAATGCATTTA
AGTGTCACGGCATTGATCGCACCAAATCCACTTCGAGGCTATCATGGTGCTCCAATAATT
GATCCCTTTGATTCTGTAATAATTGATGTAAATGGTAAAAAATTAATTGAATGTAAAGGA
AAAAGACCTGTTACATGGTTGTCTGAGATAATCAATAAATATCCAGATAATGCCAAAGTT
TCACATTTTTTATATGATAGTAAAGATGATGATTCAATTTTATTTACTGATGAGCAAAAT
CTCTATCGAACTAATTTGGAATTAAGTGAAGTTACAGTAGATTTTGTTGGAGAATATTAT
TGCGTATTTAATGACACAATTAATGACGATCCAAATGACTTTGATTATGAAGAAAAAATC
ATAAATTATGAAGCATCGAGTATTTACGTTTTTGTCAATGATCCAGAGAATCTATTATAT
GAACATCATCAGAACATTATATGGGGTAGACAATATGAACCATTTGTGATTCCATGTAAA
CCAACATCACCTCAAGTTAGAGTGGAATTAAAAAATGAAGATGGACAGCACCATTATGTA
GGAACATATGACCCAAAACGTGGATTTATAGTTTCATTTCATGATGTTGAAAGTAGCGGA
TTTTATGAGTGTTTAATAGCAGATGATCCTTCAATTTTCACACAATTTCAAGTAATTATA
AATGAACAATTTTTAACATCCACCACTACTATTAGCACTACTACTAAATCTTCGTTGGAG
CTTCAAATGGGTGATGGAAAGAATTATGATGTTAATCCCAGGGCACTGTCGGCGTATATT
AAAAAACCAATCATCACGAGTGAAACTGACTTTTACGCAAGAGATGGTGACCAGTTGCAA
ATAACTTGTCATGTAGAATTAGAAAATGATGTTGCTTACAGTGTCTTCTTCACTTTGCCT
AACGGAAAAGTTGTCAATGAAACAAGTGATTTTGTTGAGTTATCACAATTGAAGCATGAA
CATGATAATCGAAAAAAATCTCACATTACTTTAACAATCGATCATGCTGAAGCTACAAGA
GACAAAGGCGATTATACTTGTACTGTTAAAGACTTGTATGAAAATTCAAACTCAGTTGCT
GCTACAATAGTTTTTGTTAATGAACCAATAATGGAATGGAAACCTGCAAATCAAAATATC
ACAACAAATCAAGGAAAGAAAAGAGTTCAATTTTTAATTGAATATGTTGCTTATCCAGAA
GCAACTTTTGAAGTTTACAACAATCATAATGAACTTATTGCAAGAGGAACTGATGTAATT
AATCGTGAAAAATATGATGTTGTTATAAGCAAAATTGAAATTAAATTTGTTGTAAAATCT
CCAAATATTAAAGACTTTGGTGAATATACAATATTAGCAACAACTGATGGAAAAAATTAC
ACACAAAAACTTTATTTGACTGTAGCAGAAAAACCAACATGCACAATGGAAGATGTTTAC
ATAGAAGTAGGACAGGAAGTGAATATGAGATGCGAATGTCAAGCATATCCTCTAGCTGAA
ATGTCATGGTCATTTCAAGAATGCTCAAATTTATCGACATGGCCCGAATGTGGACGACAA
AGAAATGATGAAGGTGAAGAAAATAAAGCAGAAAGTGAAGCAAAATCGGATTTTGCTCAA
GTTTTATCAATTCGATTCACACCAAATCGACCTGGAACAGTTACTTGCAGAGCTAGAAAT
AAAATTGATACTGCAAGAGCAACAGCATATGCAAAAATTGGTGACTTACCTGAACCTTTT
ATGATAACTGGCCTTAGAGATGACCATCAAATTGCACATGGTGATTTAGTTGAACTTGAA
TGTGGTGCAATAATTTACAATTATTCAGATTCAATTCAATGGACAAAAGATGGAAATGTT
TTAGAAAATGGTGATGGAATTGAAATTTCTGACAGTCACACGGAATATTCATGGCGAAAA
AGATTAATTTTAAATGCAATAAAACATGAACATGATGGTGAATACAACTGTGAAGTTAAA
GAGAAAAATTCTGAAGAAATAAAATCATTGCCTGTTAGCATTCGAGTAAATGATGCAATT
GCTCCTCAAATAACTCCAAATTTCAATGATTCGACAATCACAAAACCTCTTGGAGAGATG
CTGAGACTTGAATGTTTTATTACTGGTCTTCCTACACCTAAATTATCATGGAAAAAAGAT
GGAGAAATTTTTCAAATTGATAAAAATGATTCAAGAGTTACAATGACAAATAATGATATG
ACTTTGGCATTTTCGGTATTGAAACCTGAAGACAGTGGAGTGTATGAATGCATAGCAGAA
AATCGAATTGCGACTGAAAGAAAACAAGTAGATGTTGTGATAACAACACCATCAACACCA
GTCAATAAGGCAATTATCATTGGCGTCATTACAATTATTCTCGTACTTGTGTTGCTGTCA
CTTTATTTATGTCTAAAAGTTCGTATTAAAAAGCGACAAATCGCAATGTTAAAAGCTGCT
GGTCTCGCCAATTTCGAGGAAGGTCAAGTTGAAAGCATTGACCCAGACGTTAATATTGAT
GAGCAAGCTGATTTGCTGCCATATGATAAAAAGTTTGAATTTCCTCGTGAGAAATTAAAG
TTGGGAAAGCAGTTAGGTGCAGGTGCATTTGGTGTGGTTGTGAAAGCAACAGCTCAAGGT
ATTTTACATTATGAAGAAGAAACAACAGTTGCTGTAAAAATGGTCAAGAAACAAACCGAT
AACGAAGTGATGAAAGCTCTTGTGTCAGAGCTTAAAATTATGATTCACATGGGACAGCAT
TTAAATGTGGTAAATTTATTAGGCGCTGTGACAAAAAATATAGCCAAGCGTGAGCTCATG
GTTATAGTCGAGTACTGTCGCTTTGGTAATCTTCAGAGTTTCCTCGTTAAACATCGTCCT
TATTTCATTGACCAAGTGAGAAATGACCGAATTGATCCAATGATTATGAAAAATGAAATG
CGATGGTCGAAAAACAGTGCATATAATTCTTTTAACAGTGAAGGAAATCAATATACACCC
CAACTTAATTTGGGCGTATCAAATCCTGCTGCACATATGAACACACAAGGATATGTGAGA
CATTCCGGATTTCATCAAGTTGATAGCTGTAATACAGAAGCAACTGTTGTCTCTAATATG
GAAACTGTTACAGGTGAAGATAATGCTTTGCTATCAAATAATTCTGATCAACCTTTATGG
AGATCAAATTATGGAGCAGACTACAAAGGACCAGCAAGAACTGTTTGTACATCTGATTTA
GTCTGTTGGGCTTTTCAAGTTGCACGTGGCATGGATTATTTAGCTACAAGAAAAGTTTTA
CATGGAGATCTTGCAGCAAGAAATATTTTATTGTGCGATGATAATATTGTGAAAATTTGT
GACTTCGGTCTAGCTCGTTCGATGTATAAGAATGACAATTATAAGAAGAAAGGTGAAGCA
CCTCTTCCATTTAAATGGCTCAGTATTGAAGCGATTTCTGATCATGTGTTCTCAACTTAT
TCCGATGTATGGGCTTATGGTGTTGTTCTTTGGGAATTATTTACCTTAGGTAAAGTTCCT
TACACAGGAATGGAAGCTAACCAAGAGTTGTTCTACAAACTTCGTGATGGTTATCGAATG
GAAAAGCCAAAATATGCAACACAAGATTTATATGATATCATGCTCAATTGTTGGAATGCA
AAACCAGAGTCTCGTCCATTGTTTAATGAATTAGAACGTAAATTGAGTTCATTTATGATG
GATAGCGTCAAAGATCACTATTTAGATCTCAATGAGCCATACATGCAAGCAAATACAAAA
AGTTATGAAAGTGGGGTGCCTGATTATTTAACACAAATGTCAATTCCCGAAGGTGAAGCA
CCAAAGCCACCATTGGCTCAAGAGGAAATGTTTAGTATTGATAACAGTACAACAAATGTT
CCATCCACACCAGATTACCTTTCAATGAGTCCTAAGAGTGGTGTGGTAAAATATAATTTA
CGACCAGATTCACCAACAATAGCTAAAAATTTAGATACTAGTCCGAAAAACAAAAAGAAT
GTAAATAAGAAACCTGAACTTCCTGAAGAAATTCCTATGCTCGCTTACAATCAAAATGGC
TTGCCAATTCATGACTCAGATGAAGAGCAGGTAAATACATATACAGATATGAAAATAAGA
CGAAATAGCAGTGGAAGAAAGAAACGACAAGCACCACAGCCGCCAGTGGCAGCTTCAACA
AATCAAAATTCAGATCCCGAATATAAAAATATTTTTGCACCTAGTGACAACTATGTGAAC
GTTCCAGCTGTTAATAAAAATGCATCTGTTGCTAATCCAGCTTATATCACTTTTCAATCT
GTTAATGAAAGAGCTTAA
>g5752.t6 Gene=g5752 Length=1465
MFKQLPVLLFIVQLWMEMHLSVTALIAPNPLRGYHGAPIIDPFDSVIIDVNGKKLIECKG
KRPVTWLSEIINKYPDNAKVSHFLYDSKDDDSILFTDEQNLYRTNLELSEVTVDFVGEYY
CVFNDTINDDPNDFDYEEKIINYEASSIYVFVNDPENLLYEHHQNIIWGRQYEPFVIPCK
PTSPQVRVELKNEDGQHHYVGTYDPKRGFIVSFHDVESSGFYECLIADDPSIFTQFQVII
NEQFLTSTTTISTTTKSSLELQMGDGKNYDVNPRALSAYIKKPIITSETDFYARDGDQLQ
ITCHVELENDVAYSVFFTLPNGKVVNETSDFVELSQLKHEHDNRKKSHITLTIDHAEATR
DKGDYTCTVKDLYENSNSVAATIVFVNEPIMEWKPANQNITTNQGKKRVQFLIEYVAYPE
ATFEVYNNHNELIARGTDVINREKYDVVISKIEIKFVVKSPNIKDFGEYTILATTDGKNY
TQKLYLTVAEKPTCTMEDVYIEVGQEVNMRCECQAYPLAEMSWSFQECSNLSTWPECGRQ
RNDEGEENKAESEAKSDFAQVLSIRFTPNRPGTVTCRARNKIDTARATAYAKIGDLPEPF
MITGLRDDHQIAHGDLVELECGAIIYNYSDSIQWTKDGNVLENGDGIEISDSHTEYSWRK
RLILNAIKHEHDGEYNCEVKEKNSEEIKSLPVSIRVNDAIAPQITPNFNDSTITKPLGEM
LRLECFITGLPTPKLSWKKDGEIFQIDKNDSRVTMTNNDMTLAFSVLKPEDSGVYECIAE
NRIATERKQVDVVITTPSTPVNKAIIIGVITIILVLVLLSLYLCLKVRIKKRQIAMLKAA
GLANFEEGQVESIDPDVNIDEQADLLPYDKKFEFPREKLKLGKQLGAGAFGVVVKATAQG
ILHYEEETTVAVKMVKKQTDNEVMKALVSELKIMIHMGQHLNVVNLLGAVTKNIAKRELM
VIVEYCRFGNLQSFLVKHRPYFIDQVRNDRIDPMIMKNEMRWSKNSAYNSFNSEGNQYTP
QLNLGVSNPAAHMNTQGYVRHSGFHQVDSCNTEATVVSNMETVTGEDNALLSNNSDQPLW
RSNYGADYKGPARTVCTSDLVCWAFQVARGMDYLATRKVLHGDLAARNILLCDDNIVKIC
DFGLARSMYKNDNYKKKGEAPLPFKWLSIEAISDHVFSTYSDVWAYGVVLWELFTLGKVP
YTGMEANQELFYKLRDGYRMEKPKYATQDLYDIMLNCWNAKPESRPLFNELERKLSSFMM
DSVKDHYLDLNEPYMQANTKSYESGVPDYLTQMSIPEGEAPKPPLAQEEMFSIDNSTTNV
PSTPDYLSMSPKSGVVKYNLRPDSPTIAKNLDTSPKNKKNVNKKPELPEEIPMLAYNQNG
LPIHDSDEEQVNTYTDMKIRRNSSGRKKRQAPQPPVAASTNQNSDPEYKNIFAPSDNYVN
VPAVNKNASVANPAYITFQSVNERA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 38 | g5752.t6 | CDD | cd00096 | Ig | 617 | 680 | 1.51161E-4 |
| 39 | g5752.t6 | CDD | cd00096 | Ig | 721 | 790 | 3.3688E-13 |
| 19 | g5752.t6 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 7 | 154 | 1.1E-8 |
| 24 | g5752.t6 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 155 | 241 | 5.3E-13 |
| 22 | g5752.t6 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 280 | 384 | 5.5E-8 |
| 21 | g5752.t6 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 385 | 490 | 2.8E-5 |
| 23 | g5752.t6 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 493 | 595 | 2.0E-8 |
| 20 | g5752.t6 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 596 | 694 | 1.1E-9 |
| 25 | g5752.t6 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 695 | 795 | 1.2E-17 |
| 26 | g5752.t6 | Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 838 | 965 | 4.4E-37 |
| 27 | g5752.t6 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1073 | 1268 | 2.4E-52 |
| 55 | g5752.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1346 | 1366 | - |
| 53 | g5752.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1398 | 1430 | - |
| 54 | g5752.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1414 | 1430 | - |
| 8 | g5752.t6 | PANTHER | PTHR24416:SF45 | VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 | 291 | 435 | 1.1E-128 |
| 12 | g5752.t6 | PANTHER | PTHR24416 | TYROSINE-PROTEIN KINASE RECEPTOR | 291 | 435 | 1.1E-128 |
| 6 | g5752.t6 | PANTHER | PTHR24416:SF45 | VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 | 612 | 798 | 1.1E-128 |
| 10 | g5752.t6 | PANTHER | PTHR24416 | TYROSINE-PROTEIN KINASE RECEPTOR | 612 | 798 | 1.1E-128 |
| 7 | g5752.t6 | PANTHER | PTHR24416:SF45 | VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 | 805 | 985 | 1.1E-128 |
| 11 | g5752.t6 | PANTHER | PTHR24416 | TYROSINE-PROTEIN KINASE RECEPTOR | 805 | 985 | 1.1E-128 |
| 5 | g5752.t6 | PANTHER | PTHR24416:SF45 | VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 2 | 1066 | 1263 | 1.1E-128 |
| 9 | g5752.t6 | PANTHER | PTHR24416 | TYROSINE-PROTEIN KINASE RECEPTOR | 1066 | 1263 | 1.1E-128 |
| 36 | g5752.t6 | PIRSF | PIRSF000615 | TyrPK_CSF1-R | 10 | 272 | 2.8E-14 |
| 37 | g5752.t6 | PIRSF | PIRSF000615 | TyrPK_CSF1-R | 265 | 605 | 9.7E-21 |
| 35 | g5752.t6 | PIRSF | PIRSF000615 | TyrPK_CSF1-R | 600 | 1319 | 3.7E-136 |
| 1 | g5752.t6 | Pfam | PF00047 | Immunoglobulin domain | 292 | 378 | 2.9E-5 |
| 3 | g5752.t6 | Pfam | PF07679 | Immunoglobulin I-set domain | 606 | 690 | 5.3E-6 |
| 4 | g5752.t6 | Pfam | PF07679 | Immunoglobulin I-set domain | 716 | 792 | 8.0E-13 |
| 2 | g5752.t6 | Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 879 | 1255 | 2.8E-92 |
| 30 | g5752.t6 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 33 | - |
| 31 | g5752.t6 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 32 | g5752.t6 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 15 | - |
| 34 | g5752.t6 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 33 | - |
| 29 | g5752.t6 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 34 | 803 | - |
| 33 | g5752.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 804 | 825 | - |
| 28 | g5752.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 826 | 1465 | - |
| 52 | g5752.t6 | ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 885 | 917 | - |
| 51 | g5752.t6 | ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 1119 | 1131 | - |
| 57 | g5752.t6 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 283 | 384 | 7.758 |
| 56 | g5752.t6 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 492 | 594 | 7.577 |
| 59 | g5752.t6 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 597 | 693 | 11.225 |
| 58 | g5752.t6 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 702 | 795 | 14.002 |
| 60 | g5752.t6 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 879 | 1259 | 37.163 |
| 43 | g5752.t6 | SMART | SM00409 | IG_3c | 43 | 153 | 2.1 |
| 42 | g5752.t6 | SMART | SM00409 | IG_3c | 164 | 241 | 24.0 |
| 47 | g5752.t6 | SMART | SM00409 | IG_3c | 288 | 385 | 0.2 |
| 50 | g5752.t6 | SMART | SM00408 | igc2_5 | 294 | 374 | 0.065 |
| 45 | g5752.t6 | SMART | SM00409 | IG_3c | 496 | 592 | 55.0 |
| 44 | g5752.t6 | SMART | SM00409 | IG_3c | 606 | 697 | 3.5E-4 |
| 49 | g5752.t6 | SMART | SM00408 | igc2_5 | 612 | 684 | 9.3E-6 |
| 46 | g5752.t6 | SMART | SM00409 | IG_3c | 710 | 795 | 6.5E-6 |
| 48 | g5752.t6 | SMART | SM00408 | igc2_5 | 716 | 784 | 2.0E-10 |
| 14 | g5752.t6 | SUPERFAMILY | SSF48726 | Immunoglobulin | 284 | 488 | 5.8E-6 |
| 15 | g5752.t6 | SUPERFAMILY | SSF48726 | Immunoglobulin | 489 | 600 | 8.83E-7 |
| 13 | g5752.t6 | SUPERFAMILY | SSF48726 | Immunoglobulin | 601 | 689 | 1.33E-9 |
| 16 | g5752.t6 | SUPERFAMILY | SSF48726 | Immunoglobulin | 711 | 791 | 2.95E-16 |
| 17 | g5752.t6 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 866 | 1252 | 1.11E-67 |
| 18 | g5752.t6 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 24 | - |
| 41 | g5752.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 804 | 826 | - |
| 40 | g5752.t6 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 885 | 904 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5752/g5752.t6; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5752.t6.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
- This transcript has been annotated with K05096 (FMS-like tyrosine kinase 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
