General information for g5762.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as V-type proton ATPase subunit E.
Parent gene
- The parent gene g5762 is located on chr_2: 11805375..11806430 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5762 | g5762.t1 | TTS | g5762.t1 | 11804042 | 11804042 |
| chr_2 | g5762 | g5762.t1 | isoform | g5762.t1 | 11804684 | 11806119 |
| chr_2 | g5762 | g5762.t1 | exon | g5762.t1.exon1 | 11804684 | 11804791 |
| chr_2 | g5762 | g5762.t1 | cds | g5762.t1.CDS1 | 11804684 | 11804791 |
| chr_2 | g5762 | g5762.t1 | exon | g5762.t1.exon2 | 11804852 | 11805391 |
| chr_2 | g5762 | g5762.t1 | cds | g5762.t1.CDS2 | 11804852 | 11805391 |
| chr_2 | g5762 | g5762.t1 | exon | g5762.t1.exon3 | 11806087 | 11806119 |
| chr_2 | g5762 | g5762.t1 | cds | g5762.t1.CDS3 | 11806087 | 11806119 |
| chr_2 | g5762 | g5762.t1 | TSS | g5762.t1 | 11806219 | 11806219 |
Sequences
>g5762.t1 Gene=g5762 Length=681
ATGGCTCTAAGCGATGCTGATGTTCAAAAACAGATCAAACATATGATGGCTTTCATCGAG
CAAGAAGCCAATGAAAAAGCTGAAGAAATTGACGCAAAAGCTGAAGAGGAGTTCAATATT
GAAAAAGGTCGTTTGGTGCAACAACAGCGTATTAAAATTATGGAATATTACGAAAAGAAA
GAGAAACAAGTTGAATTACAGAAAAAGATTCAATCATCAAACATGCTAAATCAAGCACGT
CTAAAAGTACTCAAGGTTCGCGAAGACCATGTCCGTGCTGTACTTGATGAAGCTAGAAGA
AGATTGGGTGAAGTCACTCGTGATCCATCAAAATATTCACAGCTTCTTCAATCTTTGGTA
ACACAAGGATTGTATCAAATGATGGAAGCAAACGTTTTAGTTCGCGGACGACAGGCTGAT
GCCCAACTTATTCAAAACGTCCTTCCCTCTTCTGTAGAACAATACAAACGTGAAACCGGC
AAGGATGTCGTTGTGACACTTGATACTGAAAACTTCCTTCCAGCAGATTCAACTGGCGGT
ATTGAGCTCAGTGCTCTTCAAGGACGTATTAAGGTCGTTAACACCCTCGAGTCTCGATTG
GAAATGATTGCTCAACAGTTAGTTCCTGCTATTCGTACAGCACTCTTTGGTAAAAATAAC
AACCGTAAATTCACAGATTAA
>g5762.t1 Gene=g5762 Length=226
MALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRIKIMEYYEKK
EKQVELQKKIQSSNMLNQARLKVLKVREDHVRAVLDEARRRLGEVTRDPSKYSQLLQSLV
TQGLYQMMEANVLVRGRQADAQLIQNVLPSSVEQYKRETGKDVVVTLDTENFLPADSTGG
IELSALQGRIKVVNTLESRLEMIAQQLVPAIRTALFGKNNNRKFTD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g5762.t1 | Coils | Coil | Coil | 16 | 36 | - |
| 6 | g5762.t1 | Gene3D | G3DSA:3.30.2320.30 | - | 93 | 226 | 1.2E-43 |
| 4 | g5762.t1 | Hamap | MF_00311 | V-type proton ATPase subunit E [atpE]. | 10 | 217 | 12.305843 |
| 2 | g5762.t1 | PANTHER | PTHR45715:SF6 | V-TYPE PROTON ATPASE SUBUNIT E-LIKE | 1 | 225 | 2.5E-88 |
| 3 | g5762.t1 | PANTHER | PTHR45715 | ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED | 1 | 225 | 2.5E-88 |
| 1 | g5762.t1 | Pfam | PF01991 | ATP synthase (E/31 kDa) subunit | 18 | 216 | 3.7E-74 |
| 5 | g5762.t1 | SUPERFAMILY | SSF160527 | V-type ATPase subunit E-like | 89 | 217 | 6.54E-25 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5762/g5762.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5762.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:1902600 | proton transmembrane transport | BP |
| GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | CC |
| GO:0046961 | proton-transporting ATPase activity, rotational mechanism | MF |
KEGG
Orthology
- This transcript has been annotated with K02150 (V-type H+-transporting ATPase subunit E)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
