General information for g5778.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Spectrin alpha chain.
Parent gene
- The parent gene g5778 is located on chr_2: 11908393..11910177 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5778 | g5778.t1 | TTS | g5778.t1 | 11900899 | 11900899 |
| chr_2 | g5778 | g5778.t1 | isoform | g5778.t1 | 11901090 | 11909454 |
| chr_2 | g5778 | g5778.t1 | exon | g5778.t1.exon1 | 11901090 | 11901215 |
| chr_2 | g5778 | g5778.t1 | cds | g5778.t1.CDS1 | 11901090 | 11901215 |
| chr_2 | g5778 | g5778.t1 | exon | g5778.t1.exon2 | 11901283 | 11901886 |
| chr_2 | g5778 | g5778.t1 | cds | g5778.t1.CDS2 | 11901283 | 11901886 |
| chr_2 | g5778 | g5778.t1 | exon | g5778.t1.exon3 | 11902229 | 11902832 |
| chr_2 | g5778 | g5778.t1 | cds | g5778.t1.CDS3 | 11902229 | 11902832 |
| chr_2 | g5778 | g5778.t1 | exon | g5778.t1.exon4 | 11902893 | 11904816 |
| chr_2 | g5778 | g5778.t1 | cds | g5778.t1.CDS4 | 11902893 | 11904816 |
| chr_2 | g5778 | g5778.t1 | exon | g5778.t1.exon5 | 11905468 | 11909454 |
| chr_2 | g5778 | g5778.t1 | cds | g5778.t1.CDS5 | 11905468 | 11909454 |
| chr_2 | g5778 | g5778.t1 | TSS | g5778.t1 | 11910181 | 11910181 |
Sequences
>g5778.t1 Gene=g5778 Length=7245
ATGGAACAGTTTACACCAAAAGAAGTTCGCATTCTTGAGAGTGCGGAAGACATTCAGGAA
CGTCGTGAGCAAGTATTGAACCGTTATGGTGAATTCAAATTGGAAACACGTTTGAAGAGA
GAAAAACTTGAAGATTCACGACGATTCCAGTATTTTAAGCGTGACTCTGATGAGTTGGAA
AGCTGGATACATGAAAAATTGCAAGCAGCTAGCGAAGAAAGCTATCGTGATCCAACAAAT
TTACAAGCAAAAATTCAAAAACATCAATCATTTGAAGCTGAAGTTGCTGCACATTCAAAT
GCAATTGTTTCACTCGATCACACTGGTCAAGAAATGATCAATCAAAACCATTTTGCCTCT
GATGTCATTCAAAAACGTCTTGATGAATTGCATCGTCTTTGGGAGTTATTACTCTCTCGT
CTTGCTGAGAAGGGAATGAAATTACAACAAGCACTCGTACTCGTTCAATATCTTCGTCAT
TGCGAAGAAGTAATGTTCTGGATTAAGGACAAAGAAGCATTTGTTACAGCTGATGAATTT
GGTCATGACCTTGAACATGTCGAAGTATTACAACGTAAATTTGATGAATTCCAAAAAGAT
ATGGCATCGCAAGAATATCGTGTTATTGAAGTCAATGATTTGGCTGATAAATTGATTCAA
GATGGTCATCCAGAACGCGATTCGATCATTAAACGTAAAGAAGAACTCAATGAGGCTTGG
CAACGATTGAAGCAATTGGCAATTATGCGTCAAGAAAAGCTTTTCGGTGCTCATGAAATT
CAAAGATTTAACCGTGATGCTGATGAAACTGTTGCATGGATAGCAGAAAAAGATGTCGTA
TTATCATCTGACGATTATGGTCGTGATTTAGCAAGTGTTCAAGCACTCCAAAGAAAACAT
GAAGGTGTTGAACGTGACTTGGCAGCTTTAGAAGACAAAGTTGCAACTCTTGGAACAGAA
GCCGGTCGCTTATGCAGTATTCACTCAGACCATAGTGATCAAATTCGTGAAAAACAATCA
GAAATTGCAGATTACTGGCAATCATTGACAGCAAAAGCAAAAGAGCGAAAACAAAAGCTT
GATGAATCGTACTCTCTTCATCGCTTTTTGGCAGATTTCCGTGATTTAATTTCATGGATT
AATGGCATGAAGGCAATTATTTCAGCTGATGAACTAGCCAAAGATGTTCCCGGTGCAGAA
AGCTTACTCGAGAGACATCAAGAACATAAGGGAGAAATTGATGCACGTGAAGATAGTTTT
GTTTCAACAACTTGTGCTGGTCGTCAACTTTTAGAGCGCGACCATTACGCTGCAGCTGAA
ATTCAAGAAAAATTGGCAGCTCTTGAAAATGACAAGACATCATTGCTTTCATTGTGGGAA
GATCGTCGCATTTTGTACGAGCAATGCATGGATTTGCAGTTATTTTATCGTGATACGGAA
CAAGCTGATACATGGATGGCAAAGCAAGAAGCATTCCTCGCAAATGATGATAAGGGAGAC
TCATTAGATTCAGTTGAGGCTCTAATCAAGAAACATGAAGATTTTGAAAAGAGTTTGGCA
GCACAAGAAGAAAAGATCAAAGCATTGGATATCTTTGCAGCAAAATTAATTGATGGTCAA
CATTATGCTGCTGACGATGTTGCTCAACGTCGTTCAATGTTACTTGCTCGTCGCTCAGCT
CTTTTGGAAAAATCCGAAGCTAGACGTTTGTTGCTTGAAGATTCAAGTCGATTGCAACAA
TTTGAACGTGATTGTGATGAAACTAAGGGATGGATTAGTGAGAAATTGAAGTTTGCTACT
GACGACAGCTATTTAGATCCAACTAACTTGAATGGAAAAGTTCAAAAGCATCAAAATTTT
GAACAAGAATTGACAGCCAACAAGAGCCGAATCGAAGACATCACTACAACTGGACATCAA
TTGATTGAAAATAATCATTATGCTGCTGATCAAATTAATGTTCGTATGCAAGAAATCATT
TCATTATGGGAAACTTTGGTCCAAGCATCTGACCGCAAGGGTTTGAAATTGCAAGAAGCC
TCACAACAACAACAATTCAATCGTACTGTTGAAGACCTTGAGTTGTGGCTGAGCGAAATT
GAAGGTCAATTGTTATCAGAAGATTATGGTAAAGACCTTACAAGTGTTCAAAATCTACAG
AAGAAACATGCTCTATTGGAAGCTGATGTTATGGCTCATCAAGACAGAATTGAAGGCATT
AAAGTTGCAGCTAATAAATTCTACGAAGGTGGTCATTTCGATGCTGAAAATATTCGCAAG
AAAGAAGTTGGTCTGTCAAAACGTTATGCTGCTCTTCAAAATCCAATGGCTGAACGTAAA
CAACGTCTTTATGACTCACTCGATGTTCAACAATTATTCCGAGATTTAGAAGATGAACAA
GCATGGATTCGTGAAAAAGAACCAATTGCAGCATCAACAAATCGTGGAAGAGACCTGATT
GGTGTTCAAAATTTGATCAAAAAACATCAAGCTGTTGTTGCTGAAATTAATAATCATGAA
AATCGCATTTCTGGTGTCATTGAAAATGGAGAACAAATGTATAAAGATCATCCATTGTCA
GGTGATGAAATTAAGAATCGTGTTGATTCATTGAAAGAGCAATGGAACAATTTGAAAGAG
AAATCAGCTCAAAGAAAGCAAGATTTAGATGATTCATTACAAGCTCATCAATATTTTGCT
GATGCAAATGAAGCAGAAAGTTGGATGCGTGAGAAAATTCCAATTGTTTCAAATACTGAC
TATGGAAACTCTGAAGATTCTTCTGAAGCTTTATTGAAGAAACATGAGGCATTAGTTTGC
GATCTTGAAGCTTTTGGTAACACAATTCAAGCATTACAAGAGCAGTCAAAGAATTGTCGT
CAACAAGAGACACCAGTAGTTGACATCACTGGAAAGGAATGTGTTGTTGCTTTGTATGAT
TACACTGAAAAATCTCCTCGTGAAGTTTCAATGAAGAAAGGTGACATTCTTACACTTTTG
AACTCAAATAATAAAGATTGGTGGAAAGTTGAAGTCAATGACAGACAAGGCTTTGTTCCA
GCAGCATATATTAAGAAAGTTGATGCAGGCTTGAGTGCAAGTCAACAAAATCTCGTTGAT
GGTCACTCAATTGCTAAACGTCAAGCACAAATCAACAGTCAATATGACAACTTATTGGCA
ATTGCTCGTGAACGACAGAATAAGCTTAATGAAACTGTCAAAGCTTATGTTTTGGTTCGT
GAAGCAGCTGAACTTTCATCATGGATTCGAGACAAAGAAAGCCATGCTCAAATTAAAGAT
GTTGGTGAAGACCTTGAAGAAGTTGAAGTTTTGCAAAAGAAATTCGATGACTTCAATGAT
GATTTGAAAGCTAATGAAGTGCGTTTAGCTAAATTGAATGAAATTGCTGTTCAATTGACA
TCGCTTGGTCAAACTGAAGCTGCTTTGAAAATTAAAACACAAATGCATACTTTAAATGAA
GAATGGACTCAACTTCAGCACATTACAACTGAACGTGCAAGTCAACTTGGATCGGCTCAT
GAAGTTCAACGTTTCCATCGTGATGTTGATGAGACTAAAGATTGGATTGCAGAAAAAGAT
AATGCATTGAATAACGACGACTTAGGCAAAGATTTGCGATCAGTTCAAACACTTCAACGA
AAGCATGAAGGAATTGAACGTGATTTGGCAGCATTGCGTGACAAAATTAGACAACTTGAT
GAAACTGCTAATCGTTTGATGCAATCTCATCCTGATACAGCTGATCAAACATATGCTAAG
CAGAAGGAAATCAATGAAGAATGGACTCAAATTCAAAGCAAGGCTAATTTACGAAAAGAG
AAGCTTTTGGATTCATACGATTTACAGCGTTTCTTGAGTGACTATCGTGACTTGATGGCA
TGGATTAACTCAATGATGACTTTAGTTTCAAGTGAAGAGCTTGCAAATGATGTTACAGGT
GCTGAAGCTTTAATTGAAAGACATCAGGAACATCGTACTGAAGTCGATGCACGTGCTGGA
ACATTCAGTGCTTTTGAACAATTTGGTACTGAATTGTTACAAGCCAATCATTATGCTTCA
CCTGAAATTCAAGAGAAGATCGAATCACTTGCTAAAGCTCGTGAAGATTTAGAACATGCA
TGGACTGCTCGTCGTTTGCAACTCGATCAAAATCTTGATTTGCAACTCTATTTGAGAGAT
TGTGAACAAGCTGAAAACTGGATGCATGCCCGTGAAGCATTCTTGAATGCAGAAGAAGTT
GATTCAAAGGGAGACAATGTTGAAGTTCTTATCAAGAAACATGAAGATTTCGATAAAGCT
ATTCATGGCCATGAAGAAAAAATTGCTGCTCTTCAAGTTTTGGCTGATCAATTGATCGCA
CAACAACATTATGCTGGCAAATTGATTGATGATAAGCGCAATGAAGTTTTGGAACGCTGG
CGTCATCTCAAAGAAGATTTGATTGAAAAACGTTCAAGATTGGGTGATGAACAGACATTG
CAACAGTTCAGTCGTGATGCTGATGAAATTGAAAACTGGATTGCTGAAAAATTGCAATTG
GCTACTGAAGAGAGCTACAAAGATCCAGCAAACATTCAATCGAAGCATCAAAAACATCAA
GCTTTCGAAGCTGAGTTGGCAGCAAATGCTGATCGTATTCAAAGCGTATTAGCAATGGGA
GGAAATCTCATTGAGAAAAATCAATGCAGTGGTTCAGAAGATGCTGTTCAAAAACGTCTT
ACTCAAATTGCAGACCAATGGGAATATTTGACTCAAAAAACAACTGAAAAGTCATTAAAG
TTAAAAGAAGCAAACAAGCAACGAACATACATTGCTGCTGTTAAAGATCTTGATTTCTGG
TTGGGTGAAGTTGAAAGTTTACTCACTTCAGAAGATGCTGGTAAAGATCTTGCATCTGTT
CAGAACTTGATGAAGAAACATCAACTCGTTGAAGCCGATATTCATGCTCACGAAGATCGT
ATTAAAGACATGAATACTCAAGCTGATTCTCTTGTAGAATGTGGACAATTTGACAGTGCA
GGCATTCAAGAGAAGCGTACATCAATCAATGAACGTTATGAGCGCATTAGAAACTTGGCT
GCTCATCGACAAGCTCGTTTGAATGAAGCAAACACATTGCATCAATTCTTCCGTGACATT
GCTGATGAAGAAAGTTGGACAAAAGAGAAGAAATTGTTGGTTGGATCTGACGATTACGGC
CGTGATCTAACAGGTGTTCAAAACTTGAAGAAAAAGCATAAACGTTTAGAAGCTGAACTT
GCATCTCACGAGCCAGCAATTCAATCGGTTCAAGAGGCTGGTGAGAAATTGATGGATGTC
AGCAATTTAGGAGTTCCAGAAATTGAACAACGTTTAAAGGCTCTCAATCAGGCATGGGCT
GAATTGAAAAACTTGGCAGCAATGAGAGGTCAAAAGTTGGATGAATCGCTGATTTATCAA
CAATTTTTGGCAAAAGTTGAAGAAGAAGAGGCATGGATCACTGAAAAGCAACAACTTTTA
TCAGTTGAAGATTACGGTGATTCCATGGCTGCAGTTCAGGGTTTGTTGAAAAAGCACGAT
GCATTCGAAACTGACTTTGCTGCCCATAATGACCGATGCTCTGATATTTGTGAACAAGGA
GCCAGTTTGGTTGCTAATAAGAATCATCATAGTGACAGCATTTCTCAACGTTGTGCACAA
TTGAAAAAGAAATTGGATAATTTATCTGCTTTAGCTGTTCGCCGCAAAAATGCTTTGCTT
GATAATTCCGCTTACTTGCAATTTATGTGGAAGAGCGATGTTGTTGAGAGCTGGATTGCT
GACAAAGAAAACCATGTCAAATCGGAAGAATTCGGTCGCGATTTATCAACTGTTCAAACT
CTTTTAACTAAACAAGAGACCTTTGATGCTGGTCTTTCTGCATTTGAACATGAAGGAATT
CACAACATTACTGTATTGAAGGATCAATTGGTAAATGCAAATCACGCACAGTCACCATCA
ATTATTAAACGTCATGAAGATGTCTTGACACGCTGGCAAAAACTTCGTGCTGCATCAGAG
GAACGTAAACTTCGTCTTCTTCAAATGCAAGATCAGTTCCGTCAAATTGAAGATCTTTAT
TTGACATTTGCAAAGAAAGCTTCTGCATTTAATTCCTGGTTCGAAAATGCCGAGGAAGAT
TTAACTGATCCAGTTCGTTGCAATTCGATTGAAGAAATTAAGGCTTTGCGCGAGGCACAT
GCTCAGTTCCAAGCAAGTTTGTCATCTGCTCAAGCAGATTTCCAAGCTTTAGCCGCGCTT
GACCAGAAGATTAAGAGTTTCAATGTTGGACCTAATCCATATACATGGTTTACAATGGAA
GCTCTTGAAGACACCTGGAAGAATTTGCAGAAGATCATTGATGAACGTGATGCTGAATTG
ACAAAGGAAGCATTCCGTCAAGAAGAGAACGATAAATTACGCAAGGAGTTTGCTAAACAT
GCCAATTTGTTCCATCAATGGCTTACAGAGACTAGAACATCATTAATGGACGGCTCTGGT
TCATTGGAAGAACAATTTGAAGTACTCTGCCACAAAGCAAATGAAATTCGTGCTCGTCGT
GGTGATTTGAAAAAGATTGAAGAACTTGGAGCAATTTTGGAAGAACATTTGATTTTGGAT
AATCGCTATACGGAACATTCAACTGTTGGACTCGCTCAACAATGGGATCAACTCGATCAA
CTTGCAATGAGAATGCAACATAACTTGAAACAACAAATTCAAGCACGCAATCAATCAGGT
GTCTCTGAGGATTCACTCAAAGAATTCTCAATGATGTTTAAGCATTTCGACAAGGACAAG
AGTGGAAAATTGAACCATCAAGAATTTAAATCCTGTCTTCGAGCTCTTGGATATGATCTG
CCTATGGTCGATGAAGGACAACCTGATCCTGAATTTGATGAAATTCTCACCGTTGTTGAT
CCAAATAGAGACGGCTATGTGTCACTGCAAGAATATATCGCTTTCATGATTTCTAAAGAA
ACTGAAAATGTTCAGAGTTATGAAGAAATTGAAAATGCTTTCCGCGCCATTACTGCCTCT
TCTGATCGACCATATGTCACAAAAGATGAATTATACTCTAATCTTACAAAGGAGATGGCC
GATTATTGCGTACAGAGAATGAAACAATATACCGATCCAAAAACTGGTCATACAATCTCA
GGCGCCCTTGATTATGTCGATTTCACACGAAAGCTTTTCGATTAA
>g5778.t1 Gene=g5778 Length=2414
MEQFTPKEVRILESAEDIQERREQVLNRYGEFKLETRLKREKLEDSRRFQYFKRDSDELE
SWIHEKLQAASEESYRDPTNLQAKIQKHQSFEAEVAAHSNAIVSLDHTGQEMINQNHFAS
DVIQKRLDELHRLWELLLSRLAEKGMKLQQALVLVQYLRHCEEVMFWIKDKEAFVTADEF
GHDLEHVEVLQRKFDEFQKDMASQEYRVIEVNDLADKLIQDGHPERDSIIKRKEELNEAW
QRLKQLAIMRQEKLFGAHEIQRFNRDADETVAWIAEKDVVLSSDDYGRDLASVQALQRKH
EGVERDLAALEDKVATLGTEAGRLCSIHSDHSDQIREKQSEIADYWQSLTAKAKERKQKL
DESYSLHRFLADFRDLISWINGMKAIISADELAKDVPGAESLLERHQEHKGEIDAREDSF
VSTTCAGRQLLERDHYAAAEIQEKLAALENDKTSLLSLWEDRRILYEQCMDLQLFYRDTE
QADTWMAKQEAFLANDDKGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDIFAAKLIDGQ
HYAADDVAQRRSMLLARRSALLEKSEARRLLLEDSSRLQQFERDCDETKGWISEKLKFAT
DDSYLDPTNLNGKVQKHQNFEQELTANKSRIEDITTTGHQLIENNHYAADQINVRMQEII
SLWETLVQASDRKGLKLQEASQQQQFNRTVEDLELWLSEIEGQLLSEDYGKDLTSVQNLQ
KKHALLEADVMAHQDRIEGIKVAANKFYEGGHFDAENIRKKEVGLSKRYAALQNPMAERK
QRLYDSLDVQQLFRDLEDEQAWIREKEPIAASTNRGRDLIGVQNLIKKHQAVVAEINNHE
NRISGVIENGEQMYKDHPLSGDEIKNRVDSLKEQWNNLKEKSAQRKQDLDDSLQAHQYFA
DANEAESWMREKIPIVSNTDYGNSEDSSEALLKKHEALVCDLEAFGNTIQALQEQSKNCR
QQETPVVDITGKECVVALYDYTEKSPREVSMKKGDILTLLNSNNKDWWKVEVNDRQGFVP
AAYIKKVDAGLSASQQNLVDGHSIAKRQAQINSQYDNLLAIARERQNKLNETVKAYVLVR
EAAELSSWIRDKESHAQIKDVGEDLEEVEVLQKKFDDFNDDLKANEVRLAKLNEIAVQLT
SLGQTEAALKIKTQMHTLNEEWTQLQHITTERASQLGSAHEVQRFHRDVDETKDWIAEKD
NALNNDDLGKDLRSVQTLQRKHEGIERDLAALRDKIRQLDETANRLMQSHPDTADQTYAK
QKEINEEWTQIQSKANLRKEKLLDSYDLQRFLSDYRDLMAWINSMMTLVSSEELANDVTG
AEALIERHQEHRTEVDARAGTFSAFEQFGTELLQANHYASPEIQEKIESLAKAREDLEHA
WTARRLQLDQNLDLQLYLRDCEQAENWMHAREAFLNAEEVDSKGDNVEVLIKKHEDFDKA
IHGHEEKIAALQVLADQLIAQQHYAGKLIDDKRNEVLERWRHLKEDLIEKRSRLGDEQTL
QQFSRDADEIENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMG
GNLIEKNQCSGSEDAVQKRLTQIADQWEYLTQKTTEKSLKLKEANKQRTYIAAVKDLDFW
LGEVESLLTSEDAGKDLASVQNLMKKHQLVEADIHAHEDRIKDMNTQADSLVECGQFDSA
GIQEKRTSINERYERIRNLAAHRQARLNEANTLHQFFRDIADEESWTKEKKLLVGSDDYG
RDLTGVQNLKKKHKRLEAELASHEPAIQSVQEAGEKLMDVSNLGVPEIEQRLKALNQAWA
ELKNLAAMRGQKLDESLIYQQFLAKVEEEEAWITEKQQLLSVEDYGDSMAAVQGLLKKHD
AFETDFAAHNDRCSDICEQGASLVANKNHHSDSISQRCAQLKKKLDNLSALAVRRKNALL
DNSAYLQFMWKSDVVESWIADKENHVKSEEFGRDLSTVQTLLTKQETFDAGLSAFEHEGI
HNITVLKDQLVNANHAQSPSIIKRHEDVLTRWQKLRAASEERKLRLLQMQDQFRQIEDLY
LTFAKKASAFNSWFENAEEDLTDPVRCNSIEEIKALREAHAQFQASLSSAQADFQALAAL
DQKIKSFNVGPNPYTWFTMEALEDTWKNLQKIIDERDAELTKEAFRQEENDKLRKEFAKH
ANLFHQWLTETRTSLMDGSGSLEEQFEVLCHKANEIRARRGDLKKIEELGAILEEHLILD
NRYTEHSTVGLAQQWDQLDQLAMRMQHNLKQQIQARNQSGVSEDSLKEFSMMFKHFDKDK
SGKLNHQEFKSCLRALGYDLPMVDEGQPDPEFDEILTVVDPNRDGYVSLQEYIAFMISKE
TENVQSYEEIENAFRAITASSDRPYVTKDELYSNLTKEMADYCVQRMKQYTDPKTGHTIS
GALDYVDFTRKLFD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 103 | g5778.t1 | CDD | cd00176 | SPEC | 48 | 258 | 4.11099E-41 |
| 107 | g5778.t1 | CDD | cd00176 | SPEC | 154 | 364 | 2.80317E-40 |
| 101 | g5778.t1 | CDD | cd00176 | SPEC | 261 | 470 | 4.37961E-39 |
| 99 | g5778.t1 | CDD | cd00176 | SPEC | 471 | 680 | 9.79277E-36 |
| 104 | g5778.t1 | CDD | cd00176 | SPEC | 682 | 893 | 2.07237E-41 |
| 96 | g5778.t1 | CDD | cd11808 | SH3_Alpha_Spectrin | 974 | 1026 | 2.11803E-31 |
| 106 | g5778.t1 | CDD | cd00176 | SPEC | 1074 | 1286 | 2.34907E-37 |
| 97 | g5778.t1 | CDD | cd00176 | SPEC | 1181 | 1392 | 1.9337E-38 |
| 108 | g5778.t1 | CDD | cd00176 | SPEC | 1393 | 1605 | 4.19357E-36 |
| 98 | g5778.t1 | CDD | cd00176 | SPEC | 1613 | 1817 | 1.27928E-41 |
| 100 | g5778.t1 | CDD | cd00176 | SPEC | 1819 | 2029 | 8.87387E-32 |
| 105 | g5778.t1 | CDD | cd00176 | SPEC | 1925 | 2140 | 1.03216E-21 |
| 102 | g5778.t1 | CDD | cd00176 | SPEC | 2039 | 2253 | 3.13356E-13 |
| 109 | g5778.t1 | CDD | cd00051 | EFh | 2268 | 2336 | 1.63267E-14 |
| 90 | g5778.t1 | Coils | Coil | Coil | 15 | 35 | - |
| 94 | g5778.t1 | Coils | Coil | Coil | 293 | 320 | - |
| 92 | g5778.t1 | Coils | Coil | Coil | 438 | 458 | - |
| 89 | g5778.t1 | Coils | Coil | Coil | 505 | 525 | - |
| 86 | g5778.t1 | Coils | Coil | Coil | 716 | 736 | - |
| 85 | g5778.t1 | Coils | Coil | Coil | 822 | 842 | - |
| 93 | g5778.t1 | Coils | Coil | Coil | 861 | 881 | - |
| 88 | g5778.t1 | Coils | Coil | Coil | 942 | 962 | - |
| 87 | g5778.t1 | Coils | Coil | Coil | 1215 | 1249 | - |
| 84 | g5778.t1 | Coils | Coil | Coil | 1441 | 1461 | - |
| 95 | g5778.t1 | Coils | Coil | Coil | 1640 | 1660 | - |
| 91 | g5778.t1 | Coils | Coil | Coil | 1891 | 1911 | - |
| 83 | g5778.t1 | Coils | Coil | Coil | 2073 | 2093 | - |
| 68 | g5778.t1 | Gene3D | G3DSA:1.20.58.60 | - | 3 | 148 | 3.2E-51 |
| 81 | g5778.t1 | Gene3D | G3DSA:1.20.58.1940 | - | 149 | 363 | 2.1E-76 |
| 71 | g5778.t1 | Gene3D | G3DSA:1.20.58.60 | - | 364 | 465 | 4.7E-30 |
| 75 | g5778.t1 | Gene3D | G3DSA:1.20.58.60 | - | 466 | 575 | 2.0E-37 |
| 73 | g5778.t1 | Gene3D | G3DSA:1.20.58.60 | - | 576 | 678 | 2.6E-36 |
| 66 | g5778.t1 | Gene3D | G3DSA:1.20.58.60 | - | 679 | 784 | 6.1E-33 |
| 80 | g5778.t1 | Gene3D | G3DSA:1.20.58.1940 | - | 785 | 973 | 1.5E-51 |
| 63 | g5778.t1 | Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 974 | 1047 | 1.0E-19 |
| 79 | g5778.t1 | Gene3D | G3DSA:1.20.58.1940 | - | 1067 | 1286 | 1.9E-65 |
| 70 | g5778.t1 | Gene3D | G3DSA:1.20.58.60 | - | 1287 | 1390 | 2.5E-35 |
| 69 | g5778.t1 | Gene3D | G3DSA:1.20.58.60 | - | 1391 | 1496 | 1.7E-34 |
| 65 | g5778.t1 | Gene3D | G3DSA:1.20.58.60 | - | 1497 | 1602 | 1.6E-35 |
| 72 | g5778.t1 | Gene3D | G3DSA:1.20.58.60 | - | 1603 | 1711 | 2.5E-34 |
| 64 | g5778.t1 | Gene3D | G3DSA:1.20.58.60 | - | 1712 | 1814 | 7.0E-34 |
| 74 | g5778.t1 | Gene3D | G3DSA:1.20.58.60 | - | 1815 | 1916 | 5.8E-34 |
| 82 | g5778.t1 | Gene3D | G3DSA:1.20.58.1940 | - | 1923 | 2039 | 5.7E-25 |
| 67 | g5778.t1 | Gene3D | G3DSA:1.20.58.60 | - | 2040 | 2150 | 5.7E-45 |
| 76 | g5778.t1 | Gene3D | G3DSA:1.20.58.60 | - | 2151 | 2257 | 3.8E-35 |
| 78 | g5778.t1 | Gene3D | G3DSA:1.10.238.10 | - | 2258 | 2343 | 3.1E-18 |
| 77 | g5778.t1 | Gene3D | G3DSA:1.10.238.10 | - | 2345 | 2414 | 2.5E-23 |
| 24 | g5778.t1 | PANTHER | PTHR23064 | TROPONIN | 2 | 558 | 0.0 |
| 31 | g5778.t1 | PANTHER | PTHR23064:SF26 | SPECTRIN ALPHA, NON-ERYTHROCYTIC 1 | 2 | 558 | 0.0 |
| 27 | g5778.t1 | PANTHER | PTHR23064 | TROPONIN | 562 | 936 | 0.0 |
| 34 | g5778.t1 | PANTHER | PTHR23064:SF26 | SPECTRIN ALPHA, NON-ERYTHROCYTIC 1 | 562 | 936 | 0.0 |
| 30 | g5778.t1 | PANTHER | PTHR23064 | TROPONIN | 1046 | 1467 | 0.0 |
| 37 | g5778.t1 | PANTHER | PTHR23064:SF26 | SPECTRIN ALPHA, NON-ERYTHROCYTIC 1 | 1046 | 1467 | 0.0 |
| 29 | g5778.t1 | PANTHER | PTHR23064 | TROPONIN | 1469 | 1824 | 0.0 |
| 36 | g5778.t1 | PANTHER | PTHR23064:SF26 | SPECTRIN ALPHA, NON-ERYTHROCYTIC 1 | 1469 | 1824 | 0.0 |
| 26 | g5778.t1 | PANTHER | PTHR23064 | TROPONIN | 1759 | 1928 | 0.0 |
| 33 | g5778.t1 | PANTHER | PTHR23064:SF26 | SPECTRIN ALPHA, NON-ERYTHROCYTIC 1 | 1759 | 1928 | 0.0 |
| 28 | g5778.t1 | PANTHER | PTHR23064 | TROPONIN | 1933 | 1976 | 0.0 |
| 35 | g5778.t1 | PANTHER | PTHR23064:SF26 | SPECTRIN ALPHA, NON-ERYTHROCYTIC 1 | 1933 | 1976 | 0.0 |
| 25 | g5778.t1 | PANTHER | PTHR23064 | TROPONIN | 1975 | 2413 | 0.0 |
| 32 | g5778.t1 | PANTHER | PTHR23064:SF26 | SPECTRIN ALPHA, NON-ERYTHROCYTIC 1 | 1975 | 2413 | 0.0 |
| 40 | g5778.t1 | PRINTS | PR01887 | Spectrin alpha chain signature | 972 | 991 | 1.3E-26 |
| 42 | g5778.t1 | PRINTS | PR00452 | SH3 domain signature | 973 | 983 | 1.5E-5 |
| 43 | g5778.t1 | PRINTS | PR00452 | SH3 domain signature | 987 | 1002 | 1.5E-5 |
| 39 | g5778.t1 | PRINTS | PR01887 | Spectrin alpha chain signature | 992 | 1006 | 1.3E-26 |
| 38 | g5778.t1 | PRINTS | PR01887 | Spectrin alpha chain signature | 1007 | 1028 | 1.3E-26 |
| 41 | g5778.t1 | PRINTS | PR00452 | SH3 domain signature | 1015 | 1027 | 1.5E-5 |
| 6 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 48 | 150 | 5.9E-22 |
| 19 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 154 | 254 | 7.4E-24 |
| 10 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 258 | 362 | 5.5E-25 |
| 20 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 365 | 464 | 1.6E-17 |
| 5 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 471 | 574 | 4.6E-22 |
| 2 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 577 | 679 | 1.4E-22 |
| 11 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 682 | 783 | 3.0E-25 |
| 13 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 788 | 890 | 6.0E-23 |
| 4 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 894 | 963 | 2.3E-13 |
| 22 | g5778.t1 | Pfam | PF00018 | SH3 domain | 976 | 1021 | 1.9E-15 |
| 14 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 1079 | 1176 | 1.1E-17 |
| 17 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 1180 | 1283 | 5.5E-24 |
| 12 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 1286 | 1389 | 3.2E-22 |
| 9 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 1393 | 1495 | 3.0E-18 |
| 3 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 1499 | 1603 | 5.9E-21 |
| 16 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 1607 | 1709 | 9.5E-23 |
| 15 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 1712 | 1815 | 1.0E-26 |
| 18 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 1819 | 1920 | 2.7E-23 |
| 8 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 1925 | 2028 | 4.5E-20 |
| 21 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 2040 | 2141 | 5.4E-18 |
| 7 | g5778.t1 | Pfam | PF00435 | Spectrin repeat | 2153 | 2251 | 2.4E-10 |
| 1 | g5778.t1 | Pfam | PF13499 | EF-hand domain pair | 2271 | 2336 | 3.0E-9 |
| 23 | g5778.t1 | Pfam | PF08726 | Ca2+ insensitive EF hand | 2343 | 2413 | 1.5E-23 |
| 135 | g5778.t1 | ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 2277 | 2289 | - |
| 134 | g5778.t1 | ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 2320 | 2332 | - |
| 136 | g5778.t1 | ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 970 | 1029 | 26.213 |
| 138 | g5778.t1 | ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 2264 | 2299 | 14.486 |
| 137 | g5778.t1 | ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 2307 | 2342 | 11.389 |
| 126 | g5778.t1 | SMART | SM00150 | SPEC_4 | 50 | 149 | 1.3E-30 |
| 133 | g5778.t1 | SMART | SM00150 | SPEC_4 | 155 | 255 | 2.1E-31 |
| 132 | g5778.t1 | SMART | SM00150 | SPEC_4 | 261 | 361 | 2.2E-33 |
| 116 | g5778.t1 | SMART | SM00150 | SPEC_4 | 367 | 467 | 2.7E-24 |
| 123 | g5778.t1 | SMART | SM00150 | SPEC_4 | 473 | 573 | 8.9E-29 |
| 131 | g5778.t1 | SMART | SM00150 | SPEC_4 | 579 | 678 | 5.9E-32 |
| 121 | g5778.t1 | SMART | SM00150 | SPEC_4 | 684 | 784 | 2.2E-32 |
| 124 | g5778.t1 | SMART | SM00150 | SPEC_4 | 790 | 890 | 2.5E-32 |
| 118 | g5778.t1 | SMART | SM00150 | SPEC_4 | 896 | 1070 | 7.0E-19 |
| 112 | g5778.t1 | SMART | SM00326 | SH3_2 | 973 | 1028 | 9.2E-19 |
| 117 | g5778.t1 | SMART | SM00150 | SPEC_4 | 1076 | 1177 | 1.2E-22 |
| 120 | g5778.t1 | SMART | SM00150 | SPEC_4 | 1183 | 1283 | 7.3E-31 |
| 130 | g5778.t1 | SMART | SM00150 | SPEC_4 | 1289 | 1389 | 1.0E-29 |
| 128 | g5778.t1 | SMART | SM00150 | SPEC_4 | 1395 | 1495 | 3.0E-24 |
| 114 | g5778.t1 | SMART | SM00150 | SPEC_4 | 1501 | 1602 | 4.6E-28 |
| 127 | g5778.t1 | SMART | SM00150 | SPEC_4 | 1608 | 1708 | 2.4E-30 |
| 122 | g5778.t1 | SMART | SM00150 | SPEC_4 | 1714 | 1814 | 6.7E-34 |
| 115 | g5778.t1 | SMART | SM00150 | SPEC_4 | 1820 | 1920 | 7.2E-30 |
| 129 | g5778.t1 | SMART | SM00150 | SPEC_4 | 1926 | 2027 | 1.1E-23 |
| 125 | g5778.t1 | SMART | SM00150 | SPEC_4 | 2041 | 2141 | 3.4E-9 |
| 119 | g5778.t1 | SMART | SM00150 | SPEC_4 | 2155 | 2250 | 0.2 |
| 110 | g5778.t1 | SMART | SM00054 | efh_1 | 2268 | 2296 | 4.8E-7 |
| 111 | g5778.t1 | SMART | SM00054 | efh_1 | 2311 | 2339 | 1.1E-4 |
| 113 | g5778.t1 | SMART | SM01184 | efhand_Ca_insen_2 | 2343 | 2414 | 2.7E-31 |
| 57 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 14 | 144 | 9.1E-27 |
| 56 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 105 | 254 | 1.31E-33 |
| 60 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 210 | 361 | 6.54E-35 |
| 59 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 312 | 463 | 1.04E-30 |
| 49 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 533 | 679 | 9.36E-30 |
| 48 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 630 | 783 | 9.68E-36 |
| 47 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 788 | 892 | 8.04E-29 |
| 53 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 892 | 967 | 1.08E-15 |
| 44 | g5778.t1 | SUPERFAMILY | SSF50044 | SH3-domain | 966 | 1039 | 1.44E-20 |
| 55 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 1039 | 1176 | 3.64E-24 |
| 46 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 1234 | 1381 | 1.05E-30 |
| 54 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 1345 | 1495 | 9.6E-29 |
| 61 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 1500 | 1604 | 1.73E-22 |
| 51 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 1569 | 1708 | 1.68E-28 |
| 50 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 1765 | 1919 | 1.03E-33 |
| 52 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 1872 | 2026 | 1.44E-24 |
| 62 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 2032 | 2144 | 8.51E-25 |
| 58 | g5778.t1 | SUPERFAMILY | SSF46966 | Spectrin repeat | 2148 | 2257 | 1.24E-15 |
| 45 | g5778.t1 | SUPERFAMILY | SSF47473 | EF-hand | 2258 | 2410 | 1.79E-21 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5778/g5778.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5778.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
- This transcript has been annotated with K06114 (spectrin alpha)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
