General information for g5783.t14
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein tumorous imaginal discs, mitochondrial.
Parent gene
- The parent gene g5783 is located on chr_2: 11923002..11928759 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5783 | g5783.t14 | TSS | g5783.t14 | 11920795 | 11920795 |
| chr_2 | g5783 | g5783.t14 | isoform | g5783.t14 | 11920828 | 11923002 |
| chr_2 | g5783 | g5783.t14 | exon | g5783.t14.exon1 | 11920828 | 11920924 |
| chr_2 | g5783 | g5783.t14 | cds | g5783.t14.CDS1 | 11920828 | 11920924 |
| chr_2 | g5783 | g5783.t14 | exon | g5783.t14.exon2 | 11921110 | 11921312 |
| chr_2 | g5783 | g5783.t14 | cds | g5783.t14.CDS2 | 11921110 | 11921312 |
| chr_2 | g5783 | g5783.t14 | exon | g5783.t14.exon3 | 11921376 | 11921808 |
| chr_2 | g5783 | g5783.t14 | cds | g5783.t14.CDS3 | 11921376 | 11921808 |
| chr_2 | g5783 | g5783.t14 | exon | g5783.t14.exon4 | 11921868 | 11922011 |
| chr_2 | g5783 | g5783.t14 | cds | g5783.t14.CDS4 | 11921868 | 11922011 |
| chr_2 | g5783 | g5783.t14 | exon | g5783.t14.exon5 | 11922075 | 11922406 |
| chr_2 | g5783 | g5783.t14 | cds | g5783.t14.CDS5 | 11922075 | 11922406 |
| chr_2 | g5783 | g5783.t14 | exon | g5783.t14.exon6 | 11922465 | 11923002 |
| chr_2 | g5783 | g5783.t14 | cds | g5783.t14.CDS6 | 11922465 | 11922785 |
| chr_2 | g5783 | g5783.t14 | TTS | g5783.t14 | 11923013 | 11923013 |
Sequences
>g5783.t14 Gene=g5783 Length=1747
ATGAAGAGGATTTTAAGTTTAGCGAATTTAAAATTATTAAATAAATGTCATTATAATCCA
GTGTATCAGAAATCTTTTGATATAAAAAGGCATGCTAATAATATTTGTAGGTTTATTCAT
GTATCCAGCACTAGTTTACAAAGAAAGGATTATTATAGCGTTTTAGGAGTCAATAAATCG
GCATCAGCAAAGGATATTAAAAAGGCGTATTATGAGTTAGCTAAAAAATATCATCCAGAT
ACCAACAAAGATGATCCAAATGCAAGTAAAAAATTTCAAGAAGTTTCGGAAGCATACGAG
GTGCTGAGTGATGATACAAAACGAAAAGAATATGACATGTTTGGACAAACATCAGAACAA
ATGGGAAGACAAGGAGGTTCAGGTGCTGGCGGCTTTTCTGGCTATGGACCACAAGGATTC
AGTCAACACTGGCAATATCGATCTACAATAGATCCAGAAGAATTGTTTAGAAAAATATTT
GGTGATTTTAAAGGCGGTGGAATGGGCGGTTTTGATGAAGCAGATTTTTCAGAGTCGAGA
TTTGGTTTTGGTGGTGCACAAGAAGTAATTATGAATCTTACATTCTCTCAAGCTGCTCGA
GGAGTGAATAAAGACATTGATGTTAATGTCGTCGATACATGCTTGAAATGTCACGGTTCG
AGATGTGAACCAGGCACGAAACCTGGAAAATGTCAATATTGCAATGGAACTGGCGTTGAA
ACTATTTCGACTGGGCCTTTTGTGATGCGTTCAACATGTCGTTATTGTCAAGGTACGAGG
ATGTATATAAAATATCCATGTATAGAATGTGATGGAAAAGGACAAACAGTGCAACGAAAA
CGAGTGACAGTATCTGTACCACCAGGAGTTGAAAACAATCAGACAGTTCGAATGACAGTT
GGAAATAAAGAGCTTTTTGTGACATTTAAAGTAGAAAAGAGTCGATACTTTAAACGAGAT
GGAAACGATGTACATACTGATGCTGAAATTTCATTATCGCAAGCAGTTCTCGGTGGTACA
ATTCGAATTCAAGGTGTTTATGAGGATCAAACCATTCAAATTATGCCTGGAAGCTCATCA
CATCAAGTAATAACACTTAAAGGTAAAGGAATAAAACGTGTTAATTCATCGTCGACTGGA
GATCATTACGTTCATCTTAAAATTGTCATTCCAAAGAAACTAACTGAGAAACAAAAGGCA
ATCATTCAGGCATATGCTGAATTAGAAAAAGATACTCCTGGTCAAATATTTGGAATGACA
CAAAAAAGTGATGGTAAGTCTAATGAAAAAGATGAGTCTAAAAATATTAAGACTCAACGA
CCACAAGAAGAAGAAGAAGAAACTGCTTATGACAAAAAAATATTAAAAGAAAAGCAGTCA
CAGTATAATTCGTTTTTTGTGCTCGGACTGCTTGGAATAATTATTACATGCATATTTTTA
TTGCGAAAGAAAGATGAAGAGACAATTGTTGATAGAACTCGAGATTATTATCTTGAAAGA
GAGATTGCTCGAAAATCACAGTCTGTATGAGTGTTGATTACTCACTAACAAAATTAGAAG
CATTAATAAAAGTTAGTTAATTGACGAAATAGTAACGTTTTTGCAAAAACTTTCTCTTAT
TCTAGGCCTTAAAGAAAGCTACTCAGAGCCAATTGAACTAACAGCGAGAATCCGAGAAGT
TTTAAAAGAAAAGAAAGCCATAGAAGAGAGTACTGATGATGATGTAAAGAAGAGAAATAA
AATTTGA
>g5783.t14 Gene=g5783 Length=509
MKRILSLANLKLLNKCHYNPVYQKSFDIKRHANNICRFIHVSSTSLQRKDYYSVLGVNKS
ASAKDIKKAYYELAKKYHPDTNKDDPNASKKFQEVSEAYEVLSDDTKRKEYDMFGQTSEQ
MGRQGGSGAGGFSGYGPQGFSQHWQYRSTIDPEELFRKIFGDFKGGGMGGFDEADFSESR
FGFGGAQEVIMNLTFSQAARGVNKDIDVNVVDTCLKCHGSRCEPGTKPGKCQYCNGTGVE
TISTGPFVMRSTCRYCQGTRMYIKYPCIECDGKGQTVQRKRVTVSVPPGVENNQTVRMTV
GNKELFVTFKVEKSRYFKRDGNDVHTDAEISLSQAVLGGTIRIQGVYEDQTIQIMPGSSS
HQVITLKGKGIKRVNSSSTGDHYVHLKIVIPKKLTEKQKAIIQAYAELEKDTPGQIFGMT
QKSDGKSNEKDESKNIKTQRPQEEEEETAYDKKILKEKQSQYNSFFVLGLLGIIITCIFL
LRKKDEETIVDRTRDYYLEREIARKSQSV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 21 | g5783.t14 | CDD | cd06257 | DnaJ | 50 | 104 | 4.36254E-26 |
| 22 | g5783.t14 | CDD | cd10719 | DnaJ_zf | 214 | 274 | 1.47406E-19 |
| 23 | g5783.t14 | CDD | cd10747 | DnaJ_C | 275 | 394 | 1.86797E-41 |
| 15 | g5783.t14 | Gene3D | G3DSA:1.10.287.110 | - | 47 | 174 | 6.6E-35 |
| 16 | g5783.t14 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 188 | 299 | 1.0E-21 |
| 14 | g5783.t14 | Gene3D | G3DSA:2.10.230.10 | - | 214 | 274 | 1.0E-21 |
| 17 | g5783.t14 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 313 | 417 | 4.4E-25 |
| 6 | g5783.t14 | Hamap | MF_01152 | Chaperone protein DnaJ [dnaJ]. | 47 | 458 | 29.648449 |
| 28 | g5783.t14 | MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 449 | - |
| 27 | g5783.t14 | MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 449 | - |
| 4 | g5783.t14 | PANTHER | PTHR44145 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 36 | 434 | 1.4E-152 |
| 5 | g5783.t14 | PANTHER | PTHR44145:SF3 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 36 | 434 | 1.4E-152 |
| 7 | g5783.t14 | PRINTS | PR00625 | DnaJ domain signature | 52 | 70 | 8.2E-27 |
| 10 | g5783.t14 | PRINTS | PR00625 | DnaJ domain signature | 70 | 85 | 8.2E-27 |
| 8 | g5783.t14 | PRINTS | PR00625 | DnaJ domain signature | 87 | 107 | 8.2E-27 |
| 9 | g5783.t14 | PRINTS | PR00625 | DnaJ domain signature | 107 | 126 | 8.2E-27 |
| 3 | g5783.t14 | Pfam | PF00226 | DnaJ domain | 50 | 112 | 7.8E-27 |
| 1 | g5783.t14 | Pfam | PF01556 | DnaJ C terminal domain | 188 | 391 | 6.3E-28 |
| 2 | g5783.t14 | Pfam | PF00684 | DnaJ central domain | 214 | 274 | 3.6E-9 |
| 19 | g5783.t14 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 461 | - |
| 20 | g5783.t14 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 462 | 481 | - |
| 18 | g5783.t14 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 482 | 509 | - |
| 26 | g5783.t14 | ProSitePatterns | PS00636 | Nt-dnaJ domain signature. | 92 | 111 | - |
| 30 | g5783.t14 | ProSiteProfiles | PS50076 | dnaJ domain profile. | 50 | 115 | 24.024 |
| 29 | g5783.t14 | ProSiteProfiles | PS51188 | Zinc finger CR-type profile. | 201 | 279 | 19.7 |
| 25 | g5783.t14 | SMART | SM00271 | dnaj_3 | 49 | 107 | 8.5E-30 |
| 13 | g5783.t14 | SUPERFAMILY | SSF46565 | Chaperone J-domain | 46 | 138 | 1.31E-30 |
| 11 | g5783.t14 | SUPERFAMILY | SSF57938 | DnaJ/Hsp40 cysteine-rich domain | 201 | 277 | 6.15E-16 |
| 12 | g5783.t14 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 316 | 402 | 8.63E-19 |
| 24 | g5783.t14 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 462 | 481 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5783/g5783.t14; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5783.t14.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006457 | protein folding | BP |
| GO:0005524 | ATP binding | MF |
| GO:0051082 | unfolded protein binding | MF |
| GO:0031072 | heat shock protein binding | MF |
| GO:0009408 | response to heat | BP |
KEGG
Orthology
- This transcript has been annotated with K09504 (DnaJ homolog subfamily A member 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed