General information for g5783.t20
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein tumorous imaginal discs, mitochondrial.
Parent gene
- The parent gene g5783 is located on chr_2: 11923002..11928759 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5783 | g5783.t20 | TSS | g5783.t20 | 11920795 | 11920795 |
| chr_2 | g5783 | g5783.t20 | isoform | g5783.t20 | 11921108 | 11923002 |
| chr_2 | g5783 | g5783.t20 | exon | g5783.t20.exon1 | 11921108 | 11921312 |
| chr_2 | g5783 | g5783.t20 | exon | g5783.t20.exon2 | 11921376 | 11921808 |
| chr_2 | g5783 | g5783.t20 | cds | g5783.t20.CDS1 | 11921412 | 11921808 |
| chr_2 | g5783 | g5783.t20 | exon | g5783.t20.exon3 | 11921868 | 11922011 |
| chr_2 | g5783 | g5783.t20 | cds | g5783.t20.CDS2 | 11921868 | 11922011 |
| chr_2 | g5783 | g5783.t20 | exon | g5783.t20.exon4 | 11922075 | 11922406 |
| chr_2 | g5783 | g5783.t20 | cds | g5783.t20.CDS3 | 11922075 | 11922406 |
| chr_2 | g5783 | g5783.t20 | exon | g5783.t20.exon5 | 11922465 | 11922528 |
| chr_2 | g5783 | g5783.t20 | cds | g5783.t20.CDS4 | 11922465 | 11922528 |
| chr_2 | g5783 | g5783.t20 | exon | g5783.t20.exon6 | 11922881 | 11923002 |
| chr_2 | g5783 | g5783.t20 | cds | g5783.t20.CDS5 | 11922881 | 11923002 |
| chr_2 | g5783 | g5783.t20 | TTS | g5783.t20 | 11923013 | 11923013 |
Sequences
>g5783.t20 Gene=g5783 Length=1300
AGATAATATTTGTAGGTTTATTCATGTATCCAGCACTAGTTTACAAAGAAAGGATTATTA
TAGCGTTTTAGGAGTCAATAAATCGGCATCAGCAAAGGATATTAAAAAGGCGTATTATGA
GTTAGCTAAAAAATATCATCCAGATACCAACAAAGATGATCCAAATGCAAGTAAAAAATT
TCAAGAAGTTTCGGAAGCATACGAGGTGCTGAGTGATGATACAAAACGAAAAGAATATGA
CATGTTTGGACAAACATCAGAACAAATGGGAAGACAAGGAGGTTCAGGTGCTGGCGGCTT
TTCTGGCTATGGACCACAAGGATTCAGTCAACACTGGCAATATCGATCTACAATAGATCC
AGAAGAATTGTTTAGAAAAATATTTGGTGATTTTAAAGGCGGTGGAATGGGCGGTTTTGA
TGAAGCAGATTTTTCAGAGTCGAGATTTGGTTTTGGTGGTGCACAAGAAGTAATTATGAA
TCTTACATTCTCTCAAGCTGCTCGAGGAGTGAATAAAGACATTGATGTTAATGTCGTCGA
TACATGCTTGAAATGTCACGGTTCGAGATGTGAACCAGGCACGAAACCTGGAAAATGTCA
ATATTGCAATGGAACTGGCGTTGAAACTATTTCGACTGGGCCTTTTGTGATGCGTTCAAC
ATGTCGTTATTGTCAAGGTACGAGGATGTATATAAAATATCCATGTATAGAATGTGATGG
AAAAGGACAAACAGTGCAACGAAAACGAGTGACAGTATCTGTACCACCAGGAGTTGAAAA
CAATCAGACAGTTCGAATGACAGTTGGAAATAAAGAGCTTTTTGTGACATTTAAAGTAGA
AAAGAGTCGATACTTTAAACGAGATGGAAACGATGTACATACTGATGCTGAAATTTCATT
ATCGCAAGCAGTTCTCGGTGGTACAATTCGAATTCAAGGTGTTTATGAGGATCAAACCAT
TCAAATTATGCCTGGAAGCTCATCACATCAAGTAATAACACTTAAAGGTAAAGGAATAAA
ACGTGTTAATTCATCGTCGACTGGAGATCATTACGTTCATCTTAAAATTGTCATTCCAAA
GAAACTAACTGAGAAACAAAAGGCAATCATTCAGGCATATGCTGAATTAGAAAAAGATAC
TCCTGGTCAAATATTTGGAATGACACAAAAAAGTGATGGCCTTAAAGAAAGCTACTCAGA
GCCAATTGAACTAACAGCGAGAATCCGAGAAGTTTTAAAAGAAAAGAAAGCCATAGAAGA
GAGTACTGATGATGATGTAAAGAAGAGAAATAAAATTTGA
>g5783.t20 Gene=g5783 Length=352
MFGQTSEQMGRQGGSGAGGFSGYGPQGFSQHWQYRSTIDPEELFRKIFGDFKGGGMGGFD
EADFSESRFGFGGAQEVIMNLTFSQAARGVNKDIDVNVVDTCLKCHGSRCEPGTKPGKCQ
YCNGTGVETISTGPFVMRSTCRYCQGTRMYIKYPCIECDGKGQTVQRKRVTVSVPPGVEN
NQTVRMTVGNKELFVTFKVEKSRYFKRDGNDVHTDAEISLSQAVLGGTIRIQGVYEDQTI
QIMPGSSSHQVITLKGKGIKRVNSSSTGDHYVHLKIVIPKKLTEKQKAIIQAYAELEKDT
PGQIFGMTQKSDGLKESYSEPIELTARIREVLKEKKAIEESTDDDVKKRNKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g5783.t20 | CDD | cd10719 | DnaJ_zf | 102 | 162 | 0.0 |
| 12 | g5783.t20 | CDD | cd10747 | DnaJ_C | 163 | 282 | 0.0 |
| 8 | g5783.t20 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 76 | 187 | 0.0 |
| 7 | g5783.t20 | Gene3D | G3DSA:2.10.230.10 | - | 102 | 162 | 0.0 |
| 9 | g5783.t20 | Gene3D | G3DSA:2.60.260.20 | Urease metallochaperone UreE | 201 | 305 | 0.0 |
| 3 | g5783.t20 | PANTHER | PTHR44145 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 8 | 316 | 0.0 |
| 4 | g5783.t20 | PANTHER | PTHR44145:SF3 | DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL | 8 | 316 | 0.0 |
| 1 | g5783.t20 | Pfam | PF01556 | DnaJ C terminal domain | 76 | 279 | 0.0 |
| 2 | g5783.t20 | Pfam | PF00684 | DnaJ central domain | 102 | 162 | 0.0 |
| 10 | g5783.t20 | ProSiteProfiles | PS51188 | Zinc finger CR-type profile. | 89 | 167 | 19.7 |
| 5 | g5783.t20 | SUPERFAMILY | SSF57938 | DnaJ/Hsp40 cysteine-rich domain | 89 | 165 | 0.0 |
| 6 | g5783.t20 | SUPERFAMILY | SSF49493 | HSP40/DnaJ peptide-binding domain | 204 | 290 | 0.0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5783/g5783.t20; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5783.t20.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006457 | protein folding | BP |
| GO:0051082 | unfolded protein binding | MF |
| GO:0031072 | heat shock protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
