Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein tumorous imaginal discs, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5783 g5783.t23 TSS g5783.t23 11920795 11920795
chr_2 g5783 g5783.t23 isoform g5783.t23 11921393 11923002
chr_2 g5783 g5783.t23 exon g5783.t23.exon1 11921393 11921808
chr_2 g5783 g5783.t23 cds g5783.t23.CDS1 11921412 11921808
chr_2 g5783 g5783.t23 exon g5783.t23.exon2 11921868 11922011
chr_2 g5783 g5783.t23 cds g5783.t23.CDS2 11921868 11922011
chr_2 g5783 g5783.t23 exon g5783.t23.exon3 11922075 11922406
chr_2 g5783 g5783.t23 cds g5783.t23.CDS3 11922075 11922406
chr_2 g5783 g5783.t23 exon g5783.t23.exon4 11922465 11923002
chr_2 g5783 g5783.t23 cds g5783.t23.CDS4 11922465 11922785
chr_2 g5783 g5783.t23 TTS g5783.t23 11922841 11922841

Sequences

>g5783.t23 Gene=g5783 Length=1430
AAAACGAAAAGAATATGACATGTTTGGACAAACATCAGAACAAATGGGAAGACAAGGAGG
TTCAGGTGCTGGCGGCTTTTCTGGCTATGGACCACAAGGATTCAGTCAACACTGGCAATA
TCGATCTACAATAGATCCAGAAGAATTGTTTAGAAAAATATTTGGTGATTTTAAAGGCGG
TGGAATGGGCGGTTTTGATGAAGCAGATTTTTCAGAGTCGAGATTTGGTTTTGGTGGTGC
ACAAGAAGTAATTATGAATCTTACATTCTCTCAAGCTGCTCGAGGAGTGAATAAAGACAT
TGATGTTAATGTCGTCGATACATGCTTGAAATGTCACGGTTCGAGATGTGAACCAGGCAC
GAAACCTGGAAAATGTCAATATTGCAATGGAACTGGCGTTGAAACTATTTCGACTGGGCC
TTTTGTGATGCGTTCAACATGTCGTTATTGTCAAGGTACGAGGATGTATATAAAATATCC
ATGTATAGAATGTGATGGAAAAGGACAAACAGTGCAACGAAAACGAGTGACAGTATCTGT
ACCACCAGGAGTTGAAAACAATCAGACAGTTCGAATGACAGTTGGAAATAAAGAGCTTTT
TGTGACATTTAAAGTAGAAAAGAGTCGATACTTTAAACGAGATGGAAACGATGTACATAC
TGATGCTGAAATTTCATTATCGCAAGCAGTTCTCGGTGGTACAATTCGAATTCAAGGTGT
TTATGAGGATCAAACCATTCAAATTATGCCTGGAAGCTCATCACATCAAGTAATAACACT
TAAAGGTAAAGGAATAAAACGTGTTAATTCATCGTCGACTGGAGATCATTACGTTCATCT
TAAAATTGTCATTCCAAAGAAACTAACTGAGAAACAAAAGGCAATCATTCAGGCATATGC
TGAATTAGAAAAAGATACTCCTGGTCAAATATTTGGAATGACACAAAAAAGTGATGGTAA
GTCTAATGAAAAAGATGAGTCTAAAAATATTAAGACTCAACGACCACAAGAAGAAGAAGA
AGAAACTGCTTATGACAAAAAAATATTAAAAGAAAAGCAGTCACAGTATAATTCGTTTTT
TGTGCTCGGACTGCTTGGAATAATTATTACATGCATATTTTTATTGCGAAAGAAAGATGA
AGAGACAATTGTTGATAGAACTCGAGATTATTATCTTGAAAGAGAGATTGCTCGAAAATC
ACAGTCTGTATGAGTGTTGATTACTCACTAACAAAATTAGAAGCATTAATAAAAGTTAGT
TAATTGACGAAATAGTAACGTTTTTGCAAAAACTTTCTCTTATTCTAGGCCTTAAAGAAA
GCTACTCAGAGCCAATTGAACTAACAGCGAGAATCCGAGAAGTTTTAAAAGAAAAGAAAG
CCATAGAAGAGAGTACTGATGATGATGTAAAGAAGAGAAATAAAATTTGA

>g5783.t23 Gene=g5783 Length=397
MFGQTSEQMGRQGGSGAGGFSGYGPQGFSQHWQYRSTIDPEELFRKIFGDFKGGGMGGFD
EADFSESRFGFGGAQEVIMNLTFSQAARGVNKDIDVNVVDTCLKCHGSRCEPGTKPGKCQ
YCNGTGVETISTGPFVMRSTCRYCQGTRMYIKYPCIECDGKGQTVQRKRVTVSVPPGVEN
NQTVRMTVGNKELFVTFKVEKSRYFKRDGNDVHTDAEISLSQAVLGGTIRIQGVYEDQTI
QIMPGSSSHQVITLKGKGIKRVNSSSTGDHYVHLKIVIPKKLTEKQKAIIQAYAELEKDT
PGQIFGMTQKSDGKSNEKDESKNIKTQRPQEEEEETAYDKKILKEKQSQYNSFFVLGLLG
IIITCIFLLRKKDEETIVDRTRDYYLEREIARKSQSV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g5783.t23 CDD cd10719 DnaJ_zf 102 162 2.04657E-18
14 g5783.t23 CDD cd10747 DnaJ_C 163 282 2.0154E-41
8 g5783.t23 Gene3D G3DSA:2.60.260.20 Urease metallochaperone UreE 76 187 6.3E-22
7 g5783.t23 Gene3D G3DSA:2.10.230.10 - 102 162 6.3E-22
9 g5783.t23 Gene3D G3DSA:2.60.260.20 Urease metallochaperone UreE 201 305 2.9E-25
16 g5783.t23 MobiDBLite mobidb-lite consensus disorder prediction 306 337 -
17 g5783.t23 MobiDBLite mobidb-lite consensus disorder prediction 312 337 -
3 g5783.t23 PANTHER PTHR44145 DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL 8 322 4.8E-106
4 g5783.t23 PANTHER PTHR44145:SF3 DNAJ HOMOLOG SUBFAMILY A MEMBER 3, MITOCHONDRIAL 8 322 4.8E-106
1 g5783.t23 Pfam PF01556 DnaJ C terminal domain 76 279 3.4E-28
2 g5783.t23 Pfam PF00684 DnaJ central domain 102 162 2.5E-9
11 g5783.t23 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 349 -
12 g5783.t23 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 350 369 -
10 g5783.t23 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 370 397 -
18 g5783.t23 ProSiteProfiles PS51188 Zinc finger CR-type profile. 89 167 19.7
5 g5783.t23 SUPERFAMILY SSF57938 DnaJ/Hsp40 cysteine-rich domain 89 165 4.19E-16
6 g5783.t23 SUPERFAMILY SSF49493 HSP40/DnaJ peptide-binding domain 204 290 5.76E-19
15 g5783.t23 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 350 369 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5783/g5783.t23; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5783.t23.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0051082 unfolded protein binding MF
GO:0031072 heat shock protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values