Gene loci information

Transcript annotation

  • This transcript has been annotated as Disintegrin and metalloproteinase domain-containing protein 10.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g579 g579.t1 TSS g579.t1 4226667 4226667
chr_3 g579 g579.t1 isoform g579.t1 4227435 4282789
chr_3 g579 g579.t1 exon g579.t1.exon1 4227435 4227537
chr_3 g579 g579.t1 cds g579.t1.CDS1 4227435 4227537
chr_3 g579 g579.t1 exon g579.t1.exon2 4247979 4248171
chr_3 g579 g579.t1 cds g579.t1.CDS2 4247979 4248171
chr_3 g579 g579.t1 exon g579.t1.exon3 4248247 4248368
chr_3 g579 g579.t1 cds g579.t1.CDS3 4248247 4248368
chr_3 g579 g579.t1 exon g579.t1.exon4 4256186 4256586
chr_3 g579 g579.t1 cds g579.t1.CDS4 4256186 4256586
chr_3 g579 g579.t1 exon g579.t1.exon5 4260271 4260979
chr_3 g579 g579.t1 cds g579.t1.CDS5 4260271 4260979
chr_3 g579 g579.t1 exon g579.t1.exon6 4263607 4263747
chr_3 g579 g579.t1 cds g579.t1.CDS6 4263607 4263747
chr_3 g579 g579.t1 exon g579.t1.exon7 4267092 4267216
chr_3 g579 g579.t1 cds g579.t1.CDS7 4267092 4267216
chr_3 g579 g579.t1 exon g579.t1.exon8 4273976 4274104
chr_3 g579 g579.t1 cds g579.t1.CDS8 4273976 4274104
chr_3 g579 g579.t1 exon g579.t1.exon9 4276994 4277162
chr_3 g579 g579.t1 cds g579.t1.CDS9 4276994 4277162
chr_3 g579 g579.t1 exon g579.t1.exon10 4279303 4279450
chr_3 g579 g579.t1 cds g579.t1.CDS10 4279303 4279450
chr_3 g579 g579.t1 exon g579.t1.exon11 4279626 4279815
chr_3 g579 g579.t1 cds g579.t1.CDS11 4279626 4279815
chr_3 g579 g579.t1 exon g579.t1.exon12 4279876 4280253
chr_3 g579 g579.t1 cds g579.t1.CDS12 4279876 4280253
chr_3 g579 g579.t1 exon g579.t1.exon13 4280820 4280930
chr_3 g579 g579.t1 cds g579.t1.CDS13 4280820 4280930
chr_3 g579 g579.t1 exon g579.t1.exon14 4280996 4282789
chr_3 g579 g579.t1 cds g579.t1.CDS14 4280996 4282789
chr_3 g579 g579.t1 TTS g579.t1 NA NA

Sequences

>g579.t1 Gene=g579 Length=4713
ATGTCGTGGATTTATGGGGTGATTTTCATCCTCATTCAAATATCATCGAAATCATCAGTG
ATAAGAAATCAACATGTTGCTCATGCAACACCATTGCAATCAGGTCACGTGCCATCACAA
ATAAACTCATTCATTCGCCATTGGGAGCCTGCACATTTCAGTCGAGATGCCTTGGAGCAA
GCCCATCGTGTTCACGAGTCTGGACGAAGAAGGAAAAGAGAAATCAATTACAATCATTTC
TCACCACACTACGGCTCAACCAATGTCATCAAGTTCAATTTCAAAGCTCATGATAGACAT
TTTAATATTGAGTTAAGAGAAGATCCAACTTCAGTTTTCACACCAGACATCATCATCGAA
AATACTGACGGTCCTATGGATTATGATATCACTAGAGTTTACACTGGCAAACTTGAAGAT
GACGAAAATTCTCACGTCCATGGCATCCTAACAGTTGACAATTTATTCGATGGTACAATT
AGCACTGGCGCAGAGCAATTTTATATCGAACCATCACATAAATATTCAAATGAATTGCCA
AAAAGTGGCGTGCATACAATAATTTATAAATTAAGTGATGTAAAAATGGATGTGCATGAT
CATAAAGATGGACATGAATGTGCAAGTGAAAAATTACATAGAAAATTGCAACAGCAAGAT
AATCATAAAAATAATGATGATGATAAAATGAATGAAAAGTCTGAAATTAATCTTAATAAA
TTAAAATTATTAAAAAATGATGATGATGATGATGTAATTAGTAGCAGCGATACTGACAAC
GCAAAGAATTTACATAAGCGCATCAAGCGTTGGCTTCAGCAGCAGTCAAGAGATCCTCAT
CATCAACATTCCGATCCACCTCTTCCATTGGATTTAGAAACGCCATATAACACGCGACTG
CACATCAATGTCAATAGCGAAAATATCAATATCAATAACGAAGACGATTATCAAAGTGAT
CAACCATCATCGTCCTCATCGAATATTCATCGAAATATTTTAGTCAATAGTTATAATCCA
AATAGTGATTATAATTTAAGAAATATCATCACAAAAGCTAATCGAAATATTGTCTCAAAT
GTTCATATTGATCGTGTCAATAATAATTTTACTGCCACGAATCAGCAATTGAATGTTGCG
ACAAATTCACGACCTAATCATAAAACACATGTCGAAATTATCACCAAAAATGGTCCGACT
AAAAAACCAAATATTATTGTTAACAATTATAATCCAGATTTGATTTATGCCAATTCACCT
GGACAAAATAATAAACATCATCCGAATAATCAAAGTCCACATCTTTATTATCCGCCGGGC
AATGTCAATTTAAATATCAAGAACGATATAATGGATATGCCACACACGAAGTCATCATCT
AGTGGATCGCCGGCCGATCGCAAGAGCACATGCATGCTTTATCTTCAGGCGGATCACACA
TTCTTTCAGAAACTTGGCTCCGATGAAGCCAGTATTGAGGCAATAACTAGACATGTGCAA
CGTGCTAATGTGATTTATAAAAATACAGACTTTAACAGTGATGGAAAACCTGATAACATA
ACATTTATGATTAAGCGCATAAAAGTTCATAACATGAATGCATTAAAAGATCCATCATAT
CGTTTTCCTGGCAACTATGGTGTTGAAAAATTTCTCGAACTATTTTCAGAGGAAGACTAT
GATCAATTTTGCCTTGCATACATGTTCACCTATAGGGATTTTGAAATGGGAACTTTGGGA
TTAGCATGGACTGGCGATCTTAAAAATGCTGGCGGTGTTTGTGAGAAAAATGGGCACTAC
CGTGGCTCGTTAAAATCATTGAACACTGGCATTGTAACATTATTAAATTATGGCAAACAT
GTACCACCAGCTGTGAGTCATGTTACGCTTGCTCATGAAATTGGACACAATTTCGGATCT
CCGCATGATCCTGATGCATGTACGCCCGGTGGTGAGGATGGAAATTTTATAATGTTTGCG
AGAGCAACATCGGGAGATAAAAGAAATAATAATAAATTTTCGCCATGTTCATTGAAAGCG
ATTGAGCCGGTTTTGAATGCGAAAGCACGTAGCAGCAAAGGATGTTTCACGGAGCCTACA
CAATCAATTTGCGGAAATGGTGTTGTTGAGCCAGGCGAACAGTGTGATTGTGGTTGGGAA
GAGGATTGCAAAGACAACTGCTGTTATCCTATGTCACGTCTACATTCTAACTATGAAATT
CCATGCACATTGAAGCCAGAAAAAGTGTGCAGTCCATCACAAGGACCTTGCTGCACAGCA
AATTGTACACTAAAATACGGCGACAAGTGTCGAGACGACAACGGATGTCGTGAACCGAGT
TATTGCGATGGACGACTTGCAACATGTCCGCCATCAATCAATAAACCCAACAAGACAATT
TGCAATAAAGAATTTGTGTGCTATATGGGAGATTGCACTGGTTCAATTTGCCTTGCATAT
GGACTTGAATCGTGTCAGTGCATACCTGGTGAGAATGATCCAAAAACAAAGTCATGTGAA
CTATGTTGCAAAAAACCCGGCGAGAATCAACCATGCATAAGCTCATTTGAATGGAACAAA
GCGCCATTCGATGTACCCGATATGTACTCTAAGCCTGGCACGCCATGTAATGACTACAAT
GGTTATTGCGATGTATTTCAGCGATGTAGAGAAGTTGATCCCTCTGGTCCGTTGGCCACA
TTGCGGAAATTGCTCCTATCGGAGGAAAGCATTGCATCGTTCAAAAAATGGGTCATCAGC
AATTGGTATGCTGTTAGCTTAATCATTGTCGCTGTATTTGCATTGTTGATCCTTAGTACA
CGCTTCCTGGGCAAAAAATCAAACTTGAAATTAAAGACTGTGACAATAATTCATAGTGCA
ACAACAGAGACAGTGAGATTGCCTGATGACAATAATGGGGTAATTGTGCACACTGCGGTA
AGAACAAAAGTGCCACTAAAGAAAAAAGTTCGTGGTGAACGAAAGAAGAAACCACTTCCA
TCAATACCGCAAAAAGATGGTGTTTTGTCACCAACCGCATTGCAATTGCCATCAACAAAT
GTCAAGCCATCAAGTCGAAGTCAAAAGAAATCTCTCGAAAGTCCAAGAAAACTTTTACGT
AAAAAGAAGAAACGTTCACCAAGTGATGAAAATACAAAAGTCATCAAAGAAGAACAGCAA
CAACCAGTGAAGCCAACAAGAAAACCTAAGAAAAAGTCCTCAATGTCTTCATCAAGCAAA
CATAAAGAAATTATTGACTATTCAAATCCTGAATCACATACAAATACTTTTGGAAAAGTT
CAGAAATGGCTTCTTGAATCACCAATTGTCCTTTCAGCAGCCTCACAAATTGAACATGCC
TCGAAATCAAATATTATAAATAAATCACATTCAACACCCGAACATTTGACAACAATTCAA
CCACCACAACAACCGACACAACAAAGATCACCAATCAATACAGCAAAACCAAAAGTGACT
AAATCAACCAATAATATCAATGACAAAGTTCGACTTCAAGTTGTCTACAAACCACCATTT
AAATTTTCATTGAAATTCTCTAAAAATGAAAATAACAATGTCAAAACAAATGTTGTGACC
AATAGTGCTGAAAAATCACGACAAAGACAACAGCAGCAATTGCAACAACAATCAAGCCAA
AATAAAAGAAATTCTCTAGAAGATCCAGCAAGATCTCGACGAGCTGCACTTTTAATTCGA
TCTGCAACTGAAGAAATTAACAATCAGTTGACAGAAGAGCCAGTTTATGAAACACTCAGT
CATCCACCGAAAAATAATCGTCAAACAATAATTCCTAACTATGAAAATCTACCAACAACT
TCATCAACAGCAAATCTAATAGATGCGACACTAAATAATTCAATCACATCACCAATAAAT
ACTGCCACATTCAGAGTCAATAAATCAGCAAGTGGCAGTAATATCAACAATCATAGAAAT
CTGCCAGTGGTGATGACACCCGTATTAAATAACAAAAATCGAAATCGTGGAAGTCAACAG
AATTTAAGACGATCGAGTATAAGCAATAGTGGAAGTAGTGGCAATTTAATGAAATTCGGT
GGCAGTTCACAAAATCTCACTCGTTCTAGCACGACAAATTTGACAAAGCATGGTAGAAGT
GATGGAATAAAACGTCGTGCAAGTGACATGAATCGTAGCAGCACAACAAATCTCAATAAA
TATCATCGACAGCACTCAAGTCACAGTTCTAACTCTAATTTGCGGCGCGGTGGCTCTAAC
ATGGACGTCAATGCAAGTCCATCATCTGAAGAGTACAATCCAATGAGCAGCAATGAAAGA
AAATCAACAAATAGCAGCAGAAAGAACAGTTCAATAAATAACAACGGTGTGCAAGCATGT
CCCATGCCAGGGTCATCGCGCCGCGAAAGTTTCAATAATAACATTCCACGTGCTAGTCTA
ATTAATTCAATTACCAATTTAAATAATCAACAGACGCGACAAATAAAACCAATTAATGCC
ACACAACCATTGTCGCATCAGAGCAGAGTAATGATTGATGAGTTGAATAAAAATCGACCA
CAAACATCATCCTGCGATAGCTCAATGTTTAAAAACTTTGAGTGGCCAAAAGTGCTGACA
ACACAGCGCTCGCTGCCGGCTGACAATCACGGTCTGCAGTCTGATTTAGAAGTTATGGTT
TCCGATGTAGAAAATTTAATGAACGATAGCTAG

>g579.t1 Gene=g579 Length=1570
MSWIYGVIFILIQISSKSSVIRNQHVAHATPLQSGHVPSQINSFIRHWEPAHFSRDALEQ
AHRVHESGRRRKREINYNHFSPHYGSTNVIKFNFKAHDRHFNIELREDPTSVFTPDIIIE
NTDGPMDYDITRVYTGKLEDDENSHVHGILTVDNLFDGTISTGAEQFYIEPSHKYSNELP
KSGVHTIIYKLSDVKMDVHDHKDGHECASEKLHRKLQQQDNHKNNDDDKMNEKSEINLNK
LKLLKNDDDDDVISSSDTDNAKNLHKRIKRWLQQQSRDPHHQHSDPPLPLDLETPYNTRL
HINVNSENININNEDDYQSDQPSSSSSNIHRNILVNSYNPNSDYNLRNIITKANRNIVSN
VHIDRVNNNFTATNQQLNVATNSRPNHKTHVEIITKNGPTKKPNIIVNNYNPDLIYANSP
GQNNKHHPNNQSPHLYYPPGNVNLNIKNDIMDMPHTKSSSSGSPADRKSTCMLYLQADHT
FFQKLGSDEASIEAITRHVQRANVIYKNTDFNSDGKPDNITFMIKRIKVHNMNALKDPSY
RFPGNYGVEKFLELFSEEDYDQFCLAYMFTYRDFEMGTLGLAWTGDLKNAGGVCEKNGHY
RGSLKSLNTGIVTLLNYGKHVPPAVSHVTLAHEIGHNFGSPHDPDACTPGGEDGNFIMFA
RATSGDKRNNNKFSPCSLKAIEPVLNAKARSSKGCFTEPTQSICGNGVVEPGEQCDCGWE
EDCKDNCCYPMSRLHSNYEIPCTLKPEKVCSPSQGPCCTANCTLKYGDKCRDDNGCREPS
YCDGRLATCPPSINKPNKTICNKEFVCYMGDCTGSICLAYGLESCQCIPGENDPKTKSCE
LCCKKPGENQPCISSFEWNKAPFDVPDMYSKPGTPCNDYNGYCDVFQRCREVDPSGPLAT
LRKLLLSEESIASFKKWVISNWYAVSLIIVAVFALLILSTRFLGKKSNLKLKTVTIIHSA
TTETVRLPDDNNGVIVHTAVRTKVPLKKKVRGERKKKPLPSIPQKDGVLSPTALQLPSTN
VKPSSRSQKKSLESPRKLLRKKKKRSPSDENTKVIKEEQQQPVKPTRKPKKKSSMSSSSK
HKEIIDYSNPESHTNTFGKVQKWLLESPIVLSAASQIEHASKSNIINKSHSTPEHLTTIQ
PPQQPTQQRSPINTAKPKVTKSTNNINDKVRLQVVYKPPFKFSLKFSKNENNNVKTNVVT
NSAEKSRQRQQQQLQQQSSQNKRNSLEDPARSRRAALLIRSATEEINNQLTEEPVYETLS
HPPKNNRQTIIPNYENLPTTSSTANLIDATLNNSITSPINTATFRVNKSASGSNINNHRN
LPVVMTPVLNNKNRNRGSQQNLRRSSISNSGSSGNLMKFGGSSQNLTRSSTTNLTKHGRS
DGIKRRASDMNRSSTTNLNKYHRQHSSHSSNSNLRRGGSNMDVNASPSSEEYNPMSSNER
KSTNSSRKNSSINNNGVQACPMPGSSRRESFNNNIPRASLINSITNLNNQQTRQIKPINA
TQPLSHQSRVMIDELNKNRPQTSSCDSSMFKNFEWPKVLTTQRSLPADNHGLQSDLEVMV
SDVENLMNDS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g579.t1 CDD cd04270 ZnMc_TACE_like 470 703 1.41399E-110
11 g579.t1 Coils Coil Coil 1200 1220 -
10 g579.t1 Gene3D G3DSA:3.40.390.10 Collagenase (Catalytic Domain) 465 699 3.7E-80
9 g579.t1 Gene3D G3DSA:4.10.70.10 Echistatin 700 792 1.1E-17
18 g579.t1 MobiDBLite mobidb-lite consensus disorder prediction 202 232 -
23 g579.t1 MobiDBLite mobidb-lite consensus disorder prediction 988 1090 -
25 g579.t1 MobiDBLite mobidb-lite consensus disorder prediction 1011 1028 -
26 g579.t1 MobiDBLite mobidb-lite consensus disorder prediction 1044 1065 -
17 g579.t1 MobiDBLite mobidb-lite consensus disorder prediction 1137 1166 -
21 g579.t1 MobiDBLite mobidb-lite consensus disorder prediction 1200 1225 -
22 g579.t1 MobiDBLite mobidb-lite consensus disorder prediction 1200 1231 -
19 g579.t1 MobiDBLite mobidb-lite consensus disorder prediction 1311 1468 -
20 g579.t1 MobiDBLite mobidb-lite consensus disorder prediction 1311 1377 -
24 g579.t1 MobiDBLite mobidb-lite consensus disorder prediction 1389 1468 -
4 g579.t1 PANTHER PTHR45702 ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER 22 1142 0.0
5 g579.t1 PANTHER PTHR45702:SF3 KUZBANIAN-LIKE, ISOFORM A 22 1142 0.0
3 g579.t1 Pfam PF01562 Reprolysin family propeptide 62 179 6.7E-7
1 g579.t1 Pfam PF13688 Metallo-peptidase family M12 468 674 3.2E-28
2 g579.t1 Pfam PF00200 Disintegrin 710 791 1.1E-12
13 g579.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 921 -
14 g579.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 922 943 -
12 g579.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 944 1570 -
28 g579.t1 ProSiteProfiles PS50215 ADAM type metalloprotease domain profile. 469 686 19.607
27 g579.t1 ProSiteProfiles PS50214 Disintegrin domain profile. 701 797 13.649
16 g579.t1 SMART SM00050 DISIN_2 710 795 2.5E-15
7 g579.t1 SUPERFAMILY SSF55486 Metalloproteases (zincins), catalytic domain 467 689 2.53E-44
6 g579.t1 SUPERFAMILY SSF57552 Blood coagulation inhibitor (disintegrin) 710 793 9.57E-11
8 g579.t1 SignalP_EUK SignalP-noTM SignalP-noTM 1 18 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g579/g579.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g579.t1.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008237 metallopeptidase activity MF
GO:0006508 proteolysis BP
GO:0004222 metalloendopeptidase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values