General information for g5805.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g5805 is located on chr_2: 12003452..12004960 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5805 | g5805.t1 | isoform | g5805.t1 | 12003452 | 12004960 |
| chr_2 | g5805 | g5805.t1 | exon | g5805.t1.exon1 | 12003452 | 12004960 |
| chr_2 | g5805 | g5805.t1 | cds | g5805.t1.CDS1 | 12003452 | 12004960 |
| chr_2 | g5805 | g5805.t1 | TSS | g5805.t1 | NA | NA |
| chr_2 | g5805 | g5805.t1 | TTS | g5805.t1 | NA | NA |
Sequences
>g5805.t1 Gene=g5805 Length=1509
ATGTTAGGAAAGCTCATAACAGCTTTGGATAAATTTTTATTTTCAAATTTAAAAACAATC
AATAACAATTGCGTGCGATGGCTTTTCAAATTGACGTGGATAATTGCAGTTGGATTTTCA
TTAAGTGGACTTTTATTTTATTCAAAACAAGCTTATAATAAATGGCACAATACTCCTGAT
ATTTCAATTTCAATTAAATCAATTCCATCAAGGGATATTCCATTTCCTGCTATCACAATT
TGTCAACCTTTAGTTCCTACACAAATTCTTAATGGTGCAAGCATTTATTACTATTTTCAA
GATCGAAATACAGAAAAAATAAAATCAAATTTATCTTCAGAATTTTACAATTATTTACCA
ATAGCAGTTCAAACATGTCTTTTACAATTTGCTTCAATTGCTTTACTGAAAATTGGTACA
AATCGTACCGAAACTAATTTTATGAAATTACTTAAAAATGCAAAATACAATTTTATTTTT
AGACATTGTGAATTTAGAAATTTAACTTTAAGCTGTGACAATCTTTTAACCCAAACTTTA
ACTGATTTTGGATTTTGTTACACTTTTAATATGCAGAAATATTTTGAAATTTTTCAAGCT
GAAATTTTAAGTGATGATTTTGATTTTTACAAAAATGAAATTAGGAATGAATCTAACAAC
ACAAATATTCAATTCGTTTCACGAATAAGAGCAGAAAAGAAAAATAGTTTTGGAGTTTTA
TTTGAATTTAGAGGTAAAGTTCAATATTGCAGACATATTGGTCATAACTTAAAATTGATT
ATTCACAAGCCTAATGAAATTCCTACAATTTTTCACGATAGTTATTTTGTCGAAATATTG
CGATACAAATATTTTTTTATTAATGCTAAAGTCAATGTTATTAACAAAAATTTGCATGAT
TATTCCACTGAAATTCGTCAATGTTATTTTGAAGGAGAGAAGAAATTGAAATTTTTTAAA
AATTATTCAAAAGCGCTTTGTGAGTTTGAATGTTTGACTAATTACACATTGAGGATTTGT
GGATGCACAAAGTTTAATATGCCAAGAGAAAATAATACAAAAGTTTGTGATCTTGATAAA
GTTCAATGTTATCAAAATATAAAGGAATTATGGCCTAACATTAATGAAAGTTCATCAGAT
GTTTCAGAAGATTGTAAATGTTTAAAACCATGCACTGATATTGAATACAATTTTGAAGTT
GAAAAAGAAACCATAAAATCCACTAATAGAATTTTTTCCTATGATGGAACATATTTTCAT
ACATCATTTAAAAATCATGTTATTGATGAACATACAAAATACGTTGTATACACAATTCAA
AATTTTATCGCTGATTGTGGTGGTTTGATCGGACTTTTTTTGGGTTTTAGTTTGTTATCA
ATTTATGAAATTGTTTGTGATTTTTTTGTATTTTCAATTAAATCAATTTCTAATCGTAAT
TTTGAAAAATCAATTAAAAGTAAAAATTTATTTGAGAAGAAAATTTTGAAGAACATACAA
GTTATATAG
>g5805.t1 Gene=g5805 Length=502
MLGKLITALDKFLFSNLKTINNNCVRWLFKLTWIIAVGFSLSGLLFYSKQAYNKWHNTPD
ISISIKSIPSRDIPFPAITICQPLVPTQILNGASIYYYFQDRNTEKIKSNLSSEFYNYLP
IAVQTCLLQFASIALLKIGTNRTETNFMKLLKNAKYNFIFRHCEFRNLTLSCDNLLTQTL
TDFGFCYTFNMQKYFEIFQAEILSDDFDFYKNEIRNESNNTNIQFVSRIRAEKKNSFGVL
FEFRGKVQYCRHIGHNLKLIIHKPNEIPTIFHDSYFVEILRYKYFFINAKVNVINKNLHD
YSTEIRQCYFEGEKKLKFFKNYSKALCEFECLTNYTLRICGCTKFNMPRENNTKVCDLDK
VQCYQNIKELWPNINESSSDVSEDCKCLKPCTDIEYNFEVEKETIKSTNRIFSYDGTYFH
TSFKNHVIDEHTKYVVYTIQNFIADCGGLIGLFLGFSLLSIYEIVCDFFVFSIKSISNRN
FEKSIKSKNLFEKKILKNIQVI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g5805.t1 | Gene3D | G3DSA:1.10.287.770 | - | 31 | 465 | 3.9E-40 |
| 10 | g5805.t1 | Gene3D | G3DSA:2.60.470.10 | - | 61 | 435 | 3.9E-40 |
| 11 | g5805.t1 | Gene3D | G3DSA:1.10.3590.10 | - | 83 | 256 | 3.9E-40 |
| 12 | g5805.t1 | Gene3D | G3DSA:1.10.287.820 | - | 300 | 391 | 3.9E-40 |
| 2 | g5805.t1 | PANTHER | PTHR11690:SF222 | ACID-SENSING ION CHANNEL 5 | 22 | 482 | 8.5E-44 |
| 3 | g5805.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 22 | 482 | 8.5E-44 |
| 4 | g5805.t1 | PRINTS | PR01078 | Amiloride-sensitive sodium channel alpha-subunit signature | 71 | 87 | 1.8E-6 |
| 7 | g5805.t1 | PRINTS | PR01078 | Amiloride-sensitive sodium channel alpha-subunit signature | 256 | 274 | 1.8E-6 |
| 6 | g5805.t1 | PRINTS | PR01078 | Amiloride-sensitive sodium channel alpha-subunit signature | 322 | 333 | 1.8E-6 |
| 5 | g5805.t1 | PRINTS | PR01078 | Amiloride-sensitive sodium channel alpha-subunit signature | 333 | 350 | 1.8E-6 |
| 8 | g5805.t1 | PRINTS | PR01078 | Amiloride-sensitive sodium channel alpha-subunit signature | 447 | 463 | 1.8E-6 |
| 1 | g5805.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 26 | 466 | 2.8E-59 |
| 16 | g5805.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 26 | - |
| 19 | g5805.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 27 | 47 | - |
| 15 | g5805.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 48 | 114 | - |
| 20 | g5805.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 115 | 136 | - |
| 17 | g5805.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 137 | 448 | - |
| 18 | g5805.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 449 | 473 | - |
| 14 | g5805.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 474 | 502 | - |
| 9 | g5805.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 449 | 471 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5805/g5805.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5805.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005272 | sodium channel activity | MF |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed