General information for g5811.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Adenylate kinase isoenzyme 1.
Parent gene
- The parent gene g5811 is located on chr_2: 12031319..12032187 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5811 | g5811.t1 | isoform | g5811.t1 | 12031319 | 12032187 |
| chr_2 | g5811 | g5811.t1 | exon | g5811.t1.exon1 | 12031319 | 12031324 |
| chr_2 | g5811 | g5811.t1 | cds | g5811.t1.CDS1 | 12031319 | 12031324 |
| chr_2 | g5811 | g5811.t1 | exon | g5811.t1.exon2 | 12031432 | 12031483 |
| chr_2 | g5811 | g5811.t1 | cds | g5811.t1.CDS2 | 12031432 | 12031483 |
| chr_2 | g5811 | g5811.t1 | exon | g5811.t1.exon3 | 12031598 | 12031817 |
| chr_2 | g5811 | g5811.t1 | cds | g5811.t1.CDS3 | 12031598 | 12031817 |
| chr_2 | g5811 | g5811.t1 | exon | g5811.t1.exon4 | 12031869 | 12032187 |
| chr_2 | g5811 | g5811.t1 | cds | g5811.t1.CDS4 | 12031869 | 12032187 |
| chr_2 | g5811 | g5811.t1 | TSS | g5811.t1 | NA | NA |
| chr_2 | g5811 | g5811.t1 | TTS | g5811.t1 | NA | NA |
Sequences
>g5811.t1 Gene=g5811 Length=597
ATGGAGCAAATCGACATCAAAATTCCAATAATTTTTGTTCTTGGTGGACCTGGCTCTGGA
AAAGGAACTCAATGTGAAAGAATTGTTGAAAAATATGGCTTTACTCATTTATCAACTGGA
AATTTATTGCGTGAAGAAGTAGCATCAGGTTCAACAAGAGGACAAGAAATTCAAGCAATA
ATGTCATCAGGTGGAATTGTTGACAATGAAACTGTTCTTGATCTTCTTCAAGCTGCAATT
TTAAAAACTGTTGATCCTAAAGGATTTTTGATTGATGGCTTTCCAAGAGAAGAAAAACAA
GGACCAGCTTTTGAAAATCGTTTTCGACCAGTTGATTTAGTGATTGTGCTGAACTGTACT
GATGAAGTTCTCATAAATCGAATTGTATTAAGATCTAAAGAATCAGCAAATAAACGGTCA
GATGATAATGAAAAAACAGCCAGAATTCGGATTGCAAGATACAGAGAGAATATTGAGAAA
ATATCATTGAAATATTCTAATAAATTGAAATATATCAATGGAGATCAAACAAAAGATGAA
GTTTTTGAAAATATTATGACTGTAATTAATGAATTAATAATCAAGAAAAGTGAATAA
>g5811.t1 Gene=g5811 Length=198
MEQIDIKIPIIFVLGGPGSGKGTQCERIVEKYGFTHLSTGNLLREEVASGSTRGQEIQAI
MSSGGIVDNETVLDLLQAAILKTVDPKGFLIDGFPREEKQGPAFENRFRPVDLVIVLNCT
DEVLINRIVLRSKESANKRSDDNEKTARIRIARYRENIEKISLKYSNKLKYINGDQTKDE
VFENIMTVINELIIKKSE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g5811.t1 | CDD | cd01428 | ADK | 10 | 181 | 1.43306E-60 |
| 10 | g5811.t1 | Gene3D | G3DSA:3.40.50.300 | - | 3 | 192 | 1.5E-59 |
| 4 | g5811.t1 | Hamap | MF_00235 | Adenylate kinase [adk]. | 9 | 190 | 32.075665 |
| 2 | g5811.t1 | PANTHER | PTHR23359 | NUCLEOTIDE KINASE | 10 | 190 | 2.3E-57 |
| 3 | g5811.t1 | PANTHER | PTHR23359:SF70 | ADENYLATE KINASE 1, ISOFORM B | 10 | 190 | 2.3E-57 |
| 8 | g5811.t1 | PRINTS | PR00094 | Adenylate kinase signature | 12 | 25 | 2.0E-23 |
| 6 | g5811.t1 | PRINTS | PR00094 | Adenylate kinase signature | 40 | 54 | 2.0E-23 |
| 5 | g5811.t1 | PRINTS | PR00094 | Adenylate kinase signature | 89 | 105 | 2.0E-23 |
| 7 | g5811.t1 | PRINTS | PR00094 | Adenylate kinase signature | 139 | 154 | 2.0E-23 |
| 1 | g5811.t1 | Pfam | PF00406 | Adenylate kinase | 13 | 167 | 1.9E-41 |
| 12 | g5811.t1 | ProSitePatterns | PS00113 | Adenylate kinase signature. | 89 | 100 | - |
| 9 | g5811.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 9 | 189 | 4.26E-36 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5811/g5811.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5811.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0006139 | nucleobase-containing compound metabolic process | BP |
| GO:0019205 | nucleobase-containing compound kinase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00939 (adenylate kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
