General information for g5813.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ABC transporter C family member 13.
Parent gene
- The parent gene g5813 is located on chr_2: 12041880..12042289 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5813 | g5813.t1 | TTS | g5813.t1 | 12037367 | 12037367 |
| chr_2 | g5813 | g5813.t1 | isoform | g5813.t1 | 12037440 | 12042289 |
| chr_2 | g5813 | g5813.t1 | exon | g5813.t1.exon1 | 12037440 | 12037697 |
| chr_2 | g5813 | g5813.t1 | cds | g5813.t1.CDS1 | 12037440 | 12037697 |
| chr_2 | g5813 | g5813.t1 | exon | g5813.t1.exon2 | 12038062 | 12038457 |
| chr_2 | g5813 | g5813.t1 | cds | g5813.t1.CDS2 | 12038062 | 12038457 |
| chr_2 | g5813 | g5813.t1 | exon | g5813.t1.exon3 | 12038513 | 12041880 |
| chr_2 | g5813 | g5813.t1 | cds | g5813.t1.CDS3 | 12038513 | 12041880 |
| chr_2 | g5813 | g5813.t1 | exon | g5813.t1.exon4 | 12041941 | 12042289 |
| chr_2 | g5813 | g5813.t1 | cds | g5813.t1.CDS4 | 12041941 | 12042289 |
| chr_2 | g5813 | g5813.t1 | TSS | g5813.t1 | 12042304 | 12042304 |
Sequences
>g5813.t1 Gene=g5813 Length=4371
ATGACAAACAACGAAATTCAATGGGATTGGAAAGAATTTTGTGAGACTGGTCTCAATGTT
TCAACAAATTCAAGTTCGATAACTCCCTGTGGACAGCAAATTTATATTCATCTGCCAACT
TTCTCACTTTTGGCAATAATTAGTTCATATAATTATGGAAAACTCATTGATCCAGTTTTG
AGGAATAATACTCAAAAATGGTGTCTTAGCATAAGAGCGCTATTAGTCATAGTGTTAGCA
ATTTTACCTCTTATCAAACTACTCACTGAGATGCAAAATGGTGAAAAAATTTGGCCGGTT
GATGTTTTATTAGCATGCACTGAAGCTTTATGCTGGACTATTCATTTTGCATTTCTCGCG
TTATATAGAAAGTTGGGAAAACTGAGTCATCGCGGTCCACTATTGATTTTAATTCTCTAT
TCTTGCTCGCTTTCATTATCAGTACTCTGGGTTCAAACAAATATGAACATTTTTAGTGAA
CTTCGAGTTGCTTTGAATGTTTTTTATGCATTGACATTGCTGCCCAGAGGAAAGTCACAA
TATATGCGTAGAACAATAGAAATAAATGAGCATGAACCATTAATCAACACGTACCATCGT
TTATCAGTTGATGGAAATGAAGAAGATTATATATTAGGCCCTGCTGAAGATGGATATAAT
TTTCTTAGTCGTTTAATCTTTTATTGGGTTAATCCATTAATACAGAAAGCATCGGCTGTA
AAACTAAAGAGTAATGAAGATCTTTTTGATCTACCTGAAAGTCTCAACATAAAAATTATT
GCTGAAAAACTGCAAAGAAATATTGATGCAGGGAAAACATTATTCCTAGCACTGCATAGA
TCTTTTGGTGTTGAATTTTACATGATTGGTATTTTGAGATTGATTTCTGATTTGTCAAGT
TTTGCTGGTCCACTTTTACTTGGTGCACTTTTAAGAACTGGATTTGAAGAAAATGATCCA
AGAGATGAAGAAAATTATAATGCTTATTACTATGCAGGAGGGCTTTTTCTAACAACACTC
GTGTCAGCAATAGCTGGCATTCATTTCAATTGGAAAATCTCAAATATCTCCACTAAAATG
AGAACTGCACTTGTGTCTACAATTTATGCTAAAGGCTTAGAGGCTAAAGGCTTGCATGAT
GCTAAACCAGAAATTTTAAATCTAATGTCAACTGATACTGATCGAATTGTAAATTCGTGT
ATTTCATTTCATAGTTTTTGGAGCATTCCATTTCAACTTTTTGCAACACTTTATTTGCTC
TACACACAACTCAAATTTGCTTTTGTGCCAGGAGTAATTTTTGCAATAATTTTGATTCCA
ATTAATCGATACATTGCTGTAAAAATTGGAAAACTTTCTGGATTTTTAATGACAGCAAAA
GATAAAAGAGTTTCATTAACAACAGAAGCATTGACTGGTGCAAAACAAATAAAATTGCAA
GCATTTGAAGACATTTTTATTGATAGAATTCAAACATTGAGAAAGAATGAAATTGTCTAT
TTATCAAAGAGAAAATATTTAGATGCTTGGTGTGTTTATTTTTGGGCTACGACACCAGTT
TTGATGTGTCTGTTTACATTTGGAGAAATAGCACTTACTGGACAAAAATTGACTGCATCA
GTAACTTATACTTCCGTTGCATTATTGAATCTTTTAATTGGACCATTAAATGCTTTTCCT
TGGGTATTAAATGGTTTAATGGAAGCTTTTGTTTCTCTAAAACGTGTTCAAGAATTAATT
GATTTAGAAAATATTGATTTATCAAAATATTACTCGAAATTGACGCCAAATTTTACCAAA
AATTTAAGTGAAACATCAGTTGTAGTTTCAATCAAAAATGGATCATTTTGTTTTGAAAAA
GAACGTGATAGAACGTCAGAAAATATAATTGTCAGTGATGTTCAAGATTTCAAATTAGAA
AATGTCAATATTGAAATCAGACAAGGCGAGTTAGTTTGCATTGATGGAACAGTTGGAAGT
GGAAAAACAGCATTACTAAATGCTATTTTGGGAAATCTTAAGAAAACTAGTGGAACTGTT
TCAGTTAAAGACATTGAAACTTTTGGATTTGGCTATGTATCACAAACGAGTTGGCTTCAA
CGTGGCACAATAAGAGAAAATATTTGTTGGGGTAAAATCTATGATGAGTCTCGTTATCAA
GCTGTGATAAAATGCTGTGCATTATCTGAAGATTTAGACAAATTAGGTGGTGACAATATT
GGAATAGGAGAAGGTGGTCGGACTTTGAGTGGAGGCCAAAAATTGCGAGTAGCACTAGCA
AGATCTCTCTATCAGGACAAACAAATTTATATCATGGATGATATTTTATCAGCACTTGAT
GCACATGTTGCATCTCATATTGTTAAATATTGCATTTTTGGATACCTTTTGAAAAAGACA
AGAATAATTGTTAGTCATAATAAAACACTTTTGGAACATGCAAATCAAATTATTCAACTT
GATAAAGGAACTGTGACTTGCATTGATCTCATGAATGAATTTGATGATGAATTAAGTGAT
GATGAACTTGATTTTGCACCTCCATCAAGACGAACACCAACTCAAATTGAACCTGATCAA
AAATCAGTTGATAGCTGCTTAATGGAAGAAGCAAAAGAAGATGGAAATATTTCAAGTTCT
GTCATTGCTTGTTATTGGAAATCAATGGGTTATATCACTGGCTTTTTCGTAATCTTTTGT
GTTTTTCTGATGCAGTTATCAAGAAATATTACAGATGGATGGTTAGCTCATTGGGTTAGC
ATTGAAACTGTCAATTCTACAAATTCTAGCTCCACTAATGAAACTAGTTATTATTTGGAA
ACATATGCATCACTAGCCCTTGGAAATTCAGTATTGACACTCATACGATCATTTCTTTTT
GCCTATGCTGGCATTAAAGCAGCAAAAATCATTCATGATAAGCTCCTGAACAAAGTATTT
TACACGAAAATTCAATTTTTTGACATCACACCGCTTGGTCGAATTCTCAATAGATTCTCT
TCTGATACTTATACAATTGACGATTCACTGCCATTTATATTCAACATTTTGCTTGCTCAG
CTGTTTGGTTTATTAGGATCAATTTTTGTTTCTCTTTATGCTCTTCCATGGTTGGCATTA
ATTATTGCACCTATGGTTCCCCTCTATCTCGATATTCAATCAAAATATAGAAATGCATCA
AGAGATATTAAAAGAATTTCTAGCAATGCTTTGTCACCTTTATATGCACAATTTACTGAG
ACATTACAAGGGCTCACAACGATTAGAGCAATGCGAGCATCAGCGAGATTTAAACAAGAT
TTTGCTGTTAAATTAGAAGAAAGCATTCGAGCACAAATAACAGCATCAGCTGCATCATGC
TGGTTATCAATGCGACTTCAATTGCTTGGAGCTTTTATCGTTGGTGGTGCTGGAATAATA
ACAGCTATAACGTCAGCACATGCTGCTTCACCAGGCATGGTTGGTCTAGCAATTTCATAT
GCACTTTCAATCAGCAGTTTATTGAGTGGACTTTTGAATGCTTTTACTGAAACTGAGCAA
GAAATGATTGCAGTTGAGCGTGTTAATCAATATTTAGATTTACCACCAGAACCTAATTTT
GATGGAACTGTTGATCCACCTTTTGGATGGCCACATCAGAGTGTTATTAAATTCAAAAAT
GTTTTCATGAGTTATCGTGAAAATTTAATTCCTGCTATCAATGGAATTTCTTTTGAAACT
GCATCATATGAAAGAATTGGAATATGCGGTAGAACTGGTGCAGGAAAAAGTTCAATAATC
AACGCATTGCTACGAGTTTCAAATTTACAACGTGGTGAAATTTTGATTGACAATGTTGAC
ATTAAAACTTTGCCATTAAATGTCCTACGTAGTCGTGTTGCTGTGATTTCACAAGAGCCA
TTTTTGTTCGAAGGAACTGTTCGTGATAATATTGATCCACGTGGTGTCTTCCTTGATTCT
GAAATTTGGAATGCAATTGCACATTCGATGACGAGTTCTTTAGTTCAAAATTTAGGAGGA
CTTTATGGAAAAATTGAAGTCTGTGGATCGAATTTATCAGCAGGGCAAAGACAATTACTT
TGTTTGACAAGAGCTTTATTGAGAAGTGCCAAGATTGTGTTGATTGATGAAGCAACTTCA
AATTTAGATCAAGAATCTGAACTTGGTGTGCAAATAGCACTAAAAAATGCTTTCAAAACA
GCAACAATTTTCATCATAGCACATCGATTAAATGGACTGCAGCACACTGATAGACTGTTT
GTGATAAATAATGGAGTGATTGCAGAAATGGGAGAATTTTCAAATTTAACAAAAGATGAA
AATACTTATTTGTACCAAATGTTGAGAGAGCAAAGAAGTAACCTGATTTAA
>g5813.t1 Gene=g5813 Length=1456
MTNNEIQWDWKEFCETGLNVSTNSSSITPCGQQIYIHLPTFSLLAIISSYNYGKLIDPVL
RNNTQKWCLSIRALLVIVLAILPLIKLLTEMQNGEKIWPVDVLLACTEALCWTIHFAFLA
LYRKLGKLSHRGPLLILILYSCSLSLSVLWVQTNMNIFSELRVALNVFYALTLLPRGKSQ
YMRRTIEINEHEPLINTYHRLSVDGNEEDYILGPAEDGYNFLSRLIFYWVNPLIQKASAV
KLKSNEDLFDLPESLNIKIIAEKLQRNIDAGKTLFLALHRSFGVEFYMIGILRLISDLSS
FAGPLLLGALLRTGFEENDPRDEENYNAYYYAGGLFLTTLVSAIAGIHFNWKISNISTKM
RTALVSTIYAKGLEAKGLHDAKPEILNLMSTDTDRIVNSCISFHSFWSIPFQLFATLYLL
YTQLKFAFVPGVIFAIILIPINRYIAVKIGKLSGFLMTAKDKRVSLTTEALTGAKQIKLQ
AFEDIFIDRIQTLRKNEIVYLSKRKYLDAWCVYFWATTPVLMCLFTFGEIALTGQKLTAS
VTYTSVALLNLLIGPLNAFPWVLNGLMEAFVSLKRVQELIDLENIDLSKYYSKLTPNFTK
NLSETSVVVSIKNGSFCFEKERDRTSENIIVSDVQDFKLENVNIEIRQGELVCIDGTVGS
GKTALLNAILGNLKKTSGTVSVKDIETFGFGYVSQTSWLQRGTIRENICWGKIYDESRYQ
AVIKCCALSEDLDKLGGDNIGIGEGGRTLSGGQKLRVALARSLYQDKQIYIMDDILSALD
AHVASHIVKYCIFGYLLKKTRIIVSHNKTLLEHANQIIQLDKGTVTCIDLMNEFDDELSD
DELDFAPPSRRTPTQIEPDQKSVDSCLMEEAKEDGNISSSVIACYWKSMGYITGFFVIFC
VFLMQLSRNITDGWLAHWVSIETVNSTNSSSTNETSYYLETYASLALGNSVLTLIRSFLF
AYAGIKAAKIIHDKLLNKVFYTKIQFFDITPLGRILNRFSSDTYTIDDSLPFIFNILLAQ
LFGLLGSIFVSLYALPWLALIIAPMVPLYLDIQSKYRNASRDIKRISSNALSPLYAQFTE
TLQGLTTIRAMRASARFKQDFAVKLEESIRAQITASAASCWLSMRLQLLGAFIVGGAGII
TAITSAHAASPGMVGLAISYALSISSLLSGLLNAFTETEQEMIAVERVNQYLDLPPEPNF
DGTVDPPFGWPHQSVIKFKNVFMSYRENLIPAINGISFETASYERIGICGRTGAGKSSII
NALLRVSNLQRGEILIDNVDIKTLPLNVLRSRVAVISQEPFLFEGTVRDNIDPRGVFLDS
EIWNAIAHSMTSSLVQNLGGLYGKIEVCGSNLSAGQRQLLCLTRALLRSAKIVLIDEATS
NLDQESELGVQIALKNAFKTATIFIIAHRLNGLQHTDRLFVINNGVIAEMGEFSNLTKDE
NTYLYQMLREQRSNLI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 54 | g5813.t1 | CDD | cd18598 | ABC_6TM_MRP7_D1_like | 288 | 576 | 7.06938E-115 |
| 53 | g5813.t1 | CDD | cd03250 | ABCC_MRP_domain1 | 609 | 824 | 6.50496E-92 |
| 51 | g5813.t1 | CDD | cd18605 | ABC_6TM_MRP7_D2_like | 895 | 1192 | 1.27947E-122 |
| 52 | g5813.t1 | CDD | cd03244 | ABCC_MRP_domain2 | 1216 | 1431 | 1.13162E-93 |
| 15 | g5813.t1 | Coils | Coil | Coil | 1445 | 1456 | - |
| 13 | g5813.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 275 | 583 | 7.1E-21 |
| 12 | g5813.t1 | Gene3D | G3DSA:3.40.50.300 | - | 588 | 842 | 1.2E-56 |
| 14 | g5813.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 880 | 1199 | 4.5E-46 |
| 11 | g5813.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1200 | 1452 | 2.4E-68 |
| 5 | g5813.t1 | PANTHER | PTHR24223:SF415 | MULTIDRUG-RESISTANCE LIKE PROTEIN 1, ISOFORM I | 174 | 1440 | 5.3E-286 |
| 6 | g5813.t1 | PANTHER | PTHR24223 | ATP-BINDING CASSETTE SUB-FAMILY C | 174 | 1440 | 5.3E-286 |
| 1 | g5813.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 288 | 556 | 9.7E-23 |
| 4 | g5813.t1 | Pfam | PF00005 | ABC transporter | 639 | 774 | 9.3E-20 |
| 2 | g5813.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 895 | 1162 | 4.0E-41 |
| 3 | g5813.t1 | Pfam | PF00005 | ABC transporter | 1234 | 1380 | 8.4E-27 |
| 26 | g5813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 33 | - |
| 40 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 34 | 55 | - |
| 21 | g5813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 56 | 66 | - |
| 38 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 67 | 85 | - |
| 30 | g5813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 86 | 96 | - |
| 44 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 97 | 122 | - |
| 19 | g5813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 123 | 133 | - |
| 37 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 134 | 151 | - |
| 25 | g5813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 152 | 156 | - |
| 49 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 157 | 174 | - |
| 18 | g5813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 175 | 285 | - |
| 45 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 286 | 308 | - |
| 27 | g5813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 309 | 327 | - |
| 39 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 328 | 351 | - |
| 22 | g5813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 352 | 395 | - |
| 36 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 396 | 421 | - |
| 32 | g5813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 422 | 426 | - |
| 50 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 427 | 447 | - |
| 17 | g5813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 448 | 509 | - |
| 35 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 510 | 527 | - |
| 29 | g5813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 528 | 546 | - |
| 41 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 547 | 567 | - |
| 23 | g5813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 568 | 887 | - |
| 46 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 888 | 906 | - |
| 31 | g5813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 907 | 941 | - |
| 43 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 942 | 965 | - |
| 20 | g5813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 966 | 1009 | - |
| 42 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1010 | 1029 | - |
| 33 | g5813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1030 | 1034 | - |
| 34 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1035 | 1052 | - |
| 24 | g5813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1053 | 1127 | - |
| 48 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1128 | 1148 | - |
| 28 | g5813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1149 | 1153 | - |
| 47 | g5813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1154 | 1175 | - |
| 16 | g5813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1176 | 1456 | - |
| 74 | g5813.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 289 | 568 | 26.726 |
| 76 | g5813.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 624 | 847 | 20.168 |
| 75 | g5813.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 895 | 1180 | 37.652 |
| 77 | g5813.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1216 | 1449 | 17.907 |
| 72 | g5813.t1 | SMART | SM00382 | AAA_5 | 648 | 862 | 2.5E-11 |
| 73 | g5813.t1 | SMART | SM00382 | AAA_5 | 1242 | 1426 | 2.6E-8 |
| 7 | g5813.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 276 | 583 | 5.49E-29 |
| 10 | g5813.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 635 | 832 | 2.13E-42 |
| 8 | g5813.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 891 | 1197 | 2.22E-56 |
| 9 | g5813.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1208 | 1445 | 1.87E-61 |
| 71 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 34 | 56 | - |
| 62 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 68 | 85 | - |
| 68 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 100 | 122 | - |
| 58 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 134 | 153 | - |
| 57 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 158 | 175 | - |
| 63 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 273 | 295 | - |
| 56 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 329 | 351 | - |
| 70 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 400 | 422 | - |
| 65 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 426 | 447 | - |
| 67 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 511 | 533 | - |
| 64 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 543 | 565 | - |
| 61 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 884 | 906 | - |
| 59 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 938 | 960 | - |
| 60 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1010 | 1029 | - |
| 55 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1033 | 1050 | - |
| 66 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1121 | 1143 | - |
| 69 | g5813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1153 | 1175 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5813/g5813.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5813.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0005524 | ATP binding | MF |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
- This transcript has been annotated with K05674 (ATP-binding cassette, subfamily C (CFTR/MRP), member 10)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
