Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase D2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5856 g5856.t4 TSS g5856.t4 12432846 12432846
chr_2 g5856 g5856.t4 isoform g5856.t4 12432935 12433674
chr_2 g5856 g5856.t4 exon g5856.t4.exon1 12432935 12433228
chr_2 g5856 g5856.t4 cds g5856.t4.CDS1 12432935 12433228
chr_2 g5856 g5856.t4 exon g5856.t4.exon2 12433291 12433441
chr_2 g5856 g5856.t4 cds g5856.t4.CDS2 12433291 12433441
chr_2 g5856 g5856.t4 exon g5856.t4.exon3 12433559 12433674
chr_2 g5856 g5856.t4 cds g5856.t4.CDS3 12433559 12433674
chr_2 g5856 g5856.t4 TTS g5856.t4 12433704 12433704

Sequences

>g5856.t4 Gene=g5856 Length=561
ATGTGTTTACTTGCAATTCGCAACCTTGGACTAGACATTGAAATTCGTAATATCGACATT
TACAAAGGAGAACAAAATACACCAGAATTTTTAAAAATAAATCCATTGCATCAAGTTCCA
ACTCTCGTTCATGAAGATTTCACTTTAACTGAGTCAAGAGCAATCATGATGTATCTCGCA
ACTATCGCAGATTCACCGCTTTATCCACGCAATGATTTAAAAAAGCGAGCACTTGTTGAT
TCAAGATTATTTTATGATGCAACAAATTCATTTGTCGCTGTCAAAGATTTTGCTCGACCC
GTGTTGAGATCGGGAGTGAAAAAAATCTCACCAGCAGCTAGAGAAGGCATCAAAGTTTTG
CTAAGTACACTCGATTCTTTCCTTCAATCATCAGCATATTTTGCTGGTGAAGAATTAACT
TTGGCTGATTTAGCCATTCTTGCTATAAATGATTGGTTTGATCGTTGCAAGTCATTGCCT
GGATTTGCTGAAAATAACGAAGGCTCGCAAATTTTAGCTGAAAAATTGACAAAATTGTTA
GAAGAACCATTATGGAAATAA

>g5856.t4 Gene=g5856 Length=186
MCLLAIRNLGLDIEIRNIDIYKGEQNTPEFLKINPLHQVPTLVHEDFTLTESRAIMMYLA
TIADSPLYPRNDLKKRALVDSRLFYDATNSFVAVKDFARPVLRSGVKKISPAAREGIKVL
LSTLDSFLQSSAYFAGEELTLADLAILAINDWFDRCKSLPGFAENNEGSQILAEKLTKLL
EEPLWK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g5856.t4 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 63 0.0000000
7 g5856.t4 Gene3D G3DSA:1.20.1050.10 - 64 181 0.0000000
3 g5856.t4 PANTHER PTHR43969:SF9 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 2 155 0.0000000
4 g5856.t4 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 2 155 0.0000000
2 g5856.t4 Pfam PF02798 Glutathione S-transferase, N-terminal domain 2 60 0.0000000
1 g5856.t4 Pfam PF00043 Glutathione S-transferase, C-terminal domain 108 161 0.0000001
10 g5856.t4 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 67 16.5440000
9 g5856.t4 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 72 186 12.9920000
11 g5856.t4 SFLD SFLDG00358 Main (cytGST) 2 160 0.0000000
12 g5856.t4 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 2 160 0.0000000
5 g5856.t4 SUPERFAMILY SSF52833 Thioredoxin-like 3 69 0.0000000
6 g5856.t4 SUPERFAMILY SSF47616 GST C-terminal domain-like 64 170 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5856/g5856.t4; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5856.t4.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed