Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase D2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5857 g5857.t1 TSS g5857.t1 12433798 12433798
chr_2 g5857 g5857.t1 isoform g5857.t1 12433845 12434707
chr_2 g5857 g5857.t1 exon g5857.t1.exon1 12433845 12434210
chr_2 g5857 g5857.t1 cds g5857.t1.CDS1 12433845 12434210
chr_2 g5857 g5857.t1 exon g5857.t1.exon2 12434338 12434505
chr_2 g5857 g5857.t1 cds g5857.t1.CDS2 12434338 12434505
chr_2 g5857 g5857.t1 exon g5857.t1.exon3 12434558 12434707
chr_2 g5857 g5857.t1 cds g5857.t1.CDS3 12434558 12434707
chr_2 g5857 g5857.t1 TTS g5857.t1 12434753 12434753

Sequences

>g5857.t1 Gene=g5857 Length=684
ATGCAGTGCTTAAATAAAAAATTTACACCAACTCTTTACTGCAACACTCATGGTGTACCA
TCAAGAGCTTGTTTGTTGACAATAAGAAATTTAGGAATTGATGTTGACTTGAAATATATT
GATGTTTTCAAAGGACAACAAAATACACCAGATTTTGTTAAAATTAATCCATTACATCAA
ATTCCAGTGCTGCACATTGCTGAAGATAATCATATTTTGACTGAATCAAGAGCAATCATG
ATGTACCTTGCTACATTCATGAAATCATCGCTTTATCCAACTAATGACTTAAATAAAAGA
GCTTTAGTTGATTCCAAATTATTTTTTGATGCTACAACTGCACATCCTGCTGTTAAAAGC
TTTATTAATCAAATAATTCGAGTCGGTGTCAAAAAGATGCCAAGTGAAATTCGCGAAAAT
CTAAAAACTTTGCTCAATACTTTGGAGTATTTTTTATCAAATTCTGAATGGATTGCAGGC
AATGAATTAACAATTGCAGATTTTGCAATTTTAGCAAGTGTTGAATCAATCAAGTGTTGG
GGTGCGACTTTTAATGAATATCCTCGACTCAATCATTGGTATGAACGTTGTCGACCACTG
CCAGGATTTACAGAAAATCATGAAGGTGCAAGAAAATTAGCTGAAAAAATGGCAAAGCTA
CTTGATGAACCTTTATGGAAATGA

>g5857.t1 Gene=g5857 Length=227
MQCLNKKFTPTLYCNTHGVPSRACLLTIRNLGIDVDLKYIDVFKGQQNTPDFVKINPLHQ
IPVLHIAEDNHILTESRAIMMYLATFMKSSLYPTNDLNKRALVDSKLFFDATTAHPAVKS
FINQIIRVGVKKMPSEIRENLKTLLNTLEYFLSNSEWIAGNELTIADFAILASVESIKCW
GATFNEYPRLNHWYERCRPLPGFTENHEGARKLAEKMAKLLDEPLWK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g5857.t1 CDD cd03177 GST_C_Delta_Epsilon 99 214 0.000
7 g5857.t1 Gene3D G3DSA:3.40.30.10 Glutaredoxin 10 87 0.000
6 g5857.t1 Gene3D G3DSA:1.20.1050.10 - 88 223 0.000
3 g5857.t1 PANTHER PTHR43969 GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED 4 216 0.000
1 g5857.t1 Pfam PF02798 Glutathione S-transferase, N-terminal domain 22 84 0.000
2 g5857.t1 Pfam PF14497 Glutathione S-transferase, C-terminal domain 130 202 0.000
9 g5857.t1 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 8 91 14.845
8 g5857.t1 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 96 220 17.759
11 g5857.t1 SFLD SFLDG00358 Main (cytGST) 11 198 0.000
12 g5857.t1 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 11 198 0.000
4 g5857.t1 SUPERFAMILY SSF52833 Thioredoxin-like 8 88 0.000
5 g5857.t1 SUPERFAMILY SSF47616 GST C-terminal domain-like 88 212 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5857/g5857.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5857.t1.fa.iupred3.txt does not exist

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed