General information for g5873.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Laminin subunit alpha-1.
Parent gene
- The parent gene g5873 is located on chr_2: 12531093..12532805 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5873 | g5873.t1 | isoform | g5873.t1 | 12517582 | 12532805 |
| chr_2 | g5873 | g5873.t1 | exon | g5873.t1.exon1 | 12517582 | 12517736 |
| chr_2 | g5873 | g5873.t1 | cds | g5873.t1.CDS1 | 12517582 | 12517736 |
| chr_2 | g5873 | g5873.t1 | exon | g5873.t1.exon2 | 12517925 | 12518150 |
| chr_2 | g5873 | g5873.t1 | cds | g5873.t1.CDS2 | 12517925 | 12518150 |
| chr_2 | g5873 | g5873.t1 | exon | g5873.t1.exon3 | 12518205 | 12518338 |
| chr_2 | g5873 | g5873.t1 | cds | g5873.t1.CDS3 | 12518205 | 12518338 |
| chr_2 | g5873 | g5873.t1 | exon | g5873.t1.exon4 | 12518398 | 12518851 |
| chr_2 | g5873 | g5873.t1 | cds | g5873.t1.CDS4 | 12518398 | 12518851 |
| chr_2 | g5873 | g5873.t1 | exon | g5873.t1.exon5 | 12518913 | 12519074 |
| chr_2 | g5873 | g5873.t1 | cds | g5873.t1.CDS5 | 12518913 | 12519074 |
| chr_2 | g5873 | g5873.t1 | exon | g5873.t1.exon6 | 12519548 | 12520621 |
| chr_2 | g5873 | g5873.t1 | cds | g5873.t1.CDS6 | 12519548 | 12520621 |
| chr_2 | g5873 | g5873.t1 | exon | g5873.t1.exon7 | 12520682 | 12521446 |
| chr_2 | g5873 | g5873.t1 | cds | g5873.t1.CDS7 | 12520682 | 12521446 |
| chr_2 | g5873 | g5873.t1 | exon | g5873.t1.exon8 | 12521501 | 12521961 |
| chr_2 | g5873 | g5873.t1 | cds | g5873.t1.CDS8 | 12521501 | 12521961 |
| chr_2 | g5873 | g5873.t1 | exon | g5873.t1.exon9 | 12522018 | 12523032 |
| chr_2 | g5873 | g5873.t1 | cds | g5873.t1.CDS9 | 12522018 | 12523032 |
| chr_2 | g5873 | g5873.t1 | exon | g5873.t1.exon10 | 12523100 | 12523317 |
| chr_2 | g5873 | g5873.t1 | cds | g5873.t1.CDS10 | 12523100 | 12523317 |
| chr_2 | g5873 | g5873.t1 | exon | g5873.t1.exon11 | 12523375 | 12523762 |
| chr_2 | g5873 | g5873.t1 | cds | g5873.t1.CDS11 | 12523375 | 12523762 |
| chr_2 | g5873 | g5873.t1 | exon | g5873.t1.exon12 | 12523818 | 12524073 |
| chr_2 | g5873 | g5873.t1 | cds | g5873.t1.CDS12 | 12523818 | 12524073 |
| chr_2 | g5873 | g5873.t1 | exon | g5873.t1.exon13 | 12524129 | 12525197 |
| chr_2 | g5873 | g5873.t1 | cds | g5873.t1.CDS13 | 12524129 | 12525197 |
| chr_2 | g5873 | g5873.t1 | exon | g5873.t1.exon14 | 12525260 | 12525550 |
| chr_2 | g5873 | g5873.t1 | cds | g5873.t1.CDS14 | 12525260 | 12525550 |
| chr_2 | g5873 | g5873.t1 | exon | g5873.t1.exon15 | 12532268 | 12532805 |
| chr_2 | g5873 | g5873.t1 | cds | g5873.t1.CDS15 | 12532268 | 12532805 |
| chr_2 | g5873 | g5873.t1 | TSS | g5873.t1 | NA | NA |
| chr_2 | g5873 | g5873.t1 | TTS | g5873.t1 | NA | NA |
Sequences
>g5873.t1 Gene=g5873 Length=7206
ATGATGGAGTACAATGCGGAAGAAGTTTATCAACGTCGAAAAAGACGATGGTTAACGTAT
GGACGTGCCTTACTTACTATAGGTATTTTGGGACTGCTGACTGTTGGATTATATAGTTTG
ACATTTACTCGAGAGTCAAGTTCTGTTCCCGATAATGTAGAATATAACAGTGAATCAAGT
ATTAGTCAAAATGATATTGCAATAAATAATAAATTAGTGAATTATGATCAAAGAATAGTC
AAACGCGATGTGAATGTTGAAAAGACAAAACAGACTCGACAAATTAATGAACATGTTGAT
TATAGTAATCCAAAGGTGACTAGCGGTAGCAGTGAGACTTTAGCAAATGAAATTTCAGAA
GAGACAAATTTAGACACTCAACATATGAAGCTGCAACAGCGGCGACAGCAGTCAAACAAC
GATGTTTTACATAAACATACGAGTGATGGTGGTATTTACATCTTTAAAGGCTATAAATGC
ATTCCCATTAGTAAGCCATCAAAACAATTAGAAAATTTAAGGGCACGGCATCGAGTGGGT
TGTAATTGTCATGTCAGTGGATCTGAGGATCGAGTTTGTAATTCCAAAACTGGTCAATGT
AAGTGTCGTCCGCATGTCATCGGTCGAACGTGCGATCGCTGTGAACGTGGCTATTGGAAT
ATCGATTCAAAGCAGGGATGCGAAAAGTGCGCGTGTAATCTCGATGGAAGCGAGCACGAA
AATTGTGACATCTATACAGGTGAATGTGCTTGTCGACAAGGCGTCGAAGGAATCAAATGC
GATCGCTGTAAAAGTGGCTATTACGGCTTTTCATCAACTGGCTGTAAAAAGTGTAATGTT
TGTGACAGCCCGTCAAAAATTTGCGATCAAGAGACTGGGCGGTGTATTTGTCCACCTTTA
AGTCATGGTAATGATTGCCAGCATTGCTATCCAAATACATGGGGTTGGGAGAATTTACGA
GGTTGCAAAAATTGTGATTGTAATCAATCTGGATCATTGAAACAATCTTGTGAAGTGCTA
ACAGGTCAATGTGAATGTAAAGAAGGCTATGCAGGTAGAGCTTGCGATTATTGTGCTCCT
GGATATTATGGCTTTCCCAATTGTCAAAAATGTAATTGTGACATTCGAGGATCAAAAAGT
TATGATGATGAAATTATTGAATGTGATGAAAAAGGTCAATGCCCATGCAAGGAACTTGTC
ACAGGTTTAAAATGCGATGAATGTCGTCAATCAACATTTGGATTGTCACAATACAACCCA
CATGGTTGCACGAGATGTTTTTGTTTTGGTCGTTCACAAACTTGCGAGCAGAATGATTTA
ATTTGGGCACAAGTGAGATTGATGGGGCCAAGAAATATTTCAGTCAATTATATCACTGAT
TATCACACTCCTTATTATCATGAAGATATTGAATATATAATTTTGACACATTCAAAAAAT
AATCATGTTTATCGTGAGACAGCACGCTATGACACTCGTAATGGATTAATGATAATGCCT
GGTCATTCTGGTGATATTATAATTGGCACAAGACGAGCATTTCACAGTCCAATTTATATA
GATTTACCAAAAGAATTTCGAGGCGATAAAACGAGCAGTTATGGAGGCTTTTTAAATTTT
ACTCTTAGCACATTTGAATATCGTACAAATTATCATTATGAACATTTAAATTCATTTCCA
CTTGTGCAGCTTCACACTCATTATCATTTAACACTCAATTATTATCATAACGAGTACAAT
AATGATGTTGATTCATTCAGTGTTATTCTTCATGAATCTTATTGGAGACACGCATCTAAT
GGATATAATATAAGTCGTGCCATAATGATGACTGCATTGCAAAATATTAAACATATTTTT
CTTAGAGTCACAACATCACAAGATTTTGTTAGTCTCACTGTTGAAAATGCAACAATGTCA
ATTGGAATGCCTCGTAATGGGAATAATAATGCAGCAATTGCTTCAGGAATTGAAAAGTGT
GATTGTCCAGAGTTATATTCTGGTGATTCATGTCAAGATCCAGCTGAAGGTTATTATCGT
TGGCGAAACACAACCACACCAACAAATTTATTAGAAGATCTCGTTGGAAAAGTCATCCCA
TGTGAATGCAATGAAAGAAGTGACAAATGTGACAAAGAAACTGGTGAATGCATTGATTGC
AAATACAACACTGGCGGTTTCAATTGCGAAGTTTGTGATGAGGGCTTTTATGGAAATCCT
GATGATGGCTGTCAAGCTTGTCCATGTCCTGAAACAAATAAAAAGTTTGCTCGTGGTTGT
TATGTTGATGTTCAAGGCGTTTCATGTTTCTGTAAAGAAGGATATTCTGGACCGCTTTGT
GAAAAATGTGCACGAGGATTTTTCGGACAACCACATGAACCTGATGGAAAATGTGAAAGT
TGTGATTGTAATATTGAAGGAATTGTGTCAGACGAGTGTGATTATTTGAATGGACAATGT
AATTGCAAAAAAGGAGTAATAGGAAGAAGATGTGACAAATGTGAATTACCAAGACATTTA
CTTATTGATTATGAATGTCAATTGTGTGACAATTGTACACAAACTTTGCTAGATTCAGTG
GATGAAATGATTTATCAATTTCAAGTTAATATCGATGGAATTGATTTGCATAATTTAAAA
GCACCTTGGCATAAGCTAAATGACTTAATTAATGCGACAGATCATTATTCAAATGACTTC
GATGAATTCTTTCAAGCTGTTGATGCTGTCGATAATTTTAATGATGTCGCATCTGATGAG
CTTCTTCTTCGCTCTGAGTCACTACTAAATAAGGCAAATCGCTTAAGTACAACAGCAGAT
AAGAAAACTCAAAAAATAGACAAACTTAAGGTAGATGCTAATGCAATTTTGGTCGATTCA
CGCGATCTCTCAGGTTCAATTCAGGAGACTATAATTAATTTAGAAAATTATGGAACAAGT
GATCATCACATTAAACTGCCAAATGCCTTAAAAGAAGCTCGAATGTATTATGATGATGTT
GTGAAACAAACCAAACATTTATCAATCGATAATGATGTTGAAAAATGTGTCAAAGATCAA
TTTGAATTTTGGACAGAAGAGCTTAAAAATACAAAAAATCAAAAAGAAAGATTAGAAAAA
TTCTTAGAAGATCAAAAAATTTTCCATGAGCGTTTAAATGACTTGAAAAATCTCACACAT
CGAGTTTTCCGTGATTCAACTGAAACTGAAGCTTTTATCACAAAAAATAAGAAAGATTTT
GAAAAATTGAAAGAAACTGTTGCGCGATTAAATGAGCAATCTGTAGAAGTTGATGGAATT
CTGGACAAAAATATTGCTGCAGAATCAGCATCTTTGATGGAAACTGTTAATGATAATCTT
GAAAAAGCTAAAGCTACCAATGATGATTTAAAGTCACTTCATAATCAAGTCGAAAAAGTT
ATTCAAGAGAGAGAAAAAGAAATTAATAAAGTTAAAGGCCAAGAAGTTGTTAAAGCTAGA
AAGCATGCAGAAAGTTTAGCAGAAAGAAGTCAAGTTATTGTGGATTTATTTCAAAATAGT
AAAGATGGTGCACAATTGGCAGTGAAAGCAGGAACAGCTTATAGTAACATCACTGATTCA
ATTATTGCTGCAAGAGAAGCTGCTGACAAAGCTCATGAGGCTGCAGTGTTTAGTAATGAA
CAATTGAATCCAACAAATCCAGATGAAGAGACCATGATGGAAAGAGGAAATGATTTATCC
CTTGAATCTGTTGCAATTCAACAAGATGCAGAACAACAAATTGAAAAGATAAGAGAACTT
AAAGTGCTTTTAAATCAACAACAAGATCTAGTCAAGAATATGAGTGCGACGATTCATAAT
AGTGGGAAAATTAATAATGAAATGTCAGCACAAATTACAAAAATGAGCAACAGTGAGTCA
CGCAAAAGTGTCCAAGAGTCTTCAGAGATGATTGATGATGTTTTAGAGAAAATTAAAAAC
ACAGATCGAGACGTTAATGAAGTTAGTGAAAATATTGCAATTTTAAGAGAAAAATTAAGT
GAGCTTGATCCAGAATGGGAATCGAAATTTAGCTTAGCTGAAGAGAATATTGCAAAATCT
TTGATTAATATTAGAGAATCAAATAAAATTTTGAATACAAATGAGCAGAGGTTTGGTCAA
CAACAGAATAAATTTCAAGAAAGGAATGGAACTCTGTCCGCAAGGTTACAAGAATTAAAA
GATAAAATTACAAAAGCTAAACATGCTGCTGAAAGTATTCGAGTTTCATTAGAATCAACA
GATGATTCATGTGTTAGATCTTTTTATCCACCAATTATTGGAGTAACTACATCAAACCAA
ATTGTGATGACTTTTGCACTCAATTCACGAAGCAATATTAATTCACCATTAATTTTCATT
CAAGGAGAAAATAATAAATTTATAGCACTCGAAATGATTAAAAGAAAAATTTATTTACTT
TGGAATATGGGTGGTGATAGTGGCATAATCACTCATCCTCTTGAAATTCTTACACGAGAT
CCAAAATATGATGATGCTTGGTATAAAGTTGAAGTAACAAGAAATTTAAATCTTGCAAGG
TTATCAGTCAGTAGAATGGCAAATAATGGATCATTTGTGTCATCACATTCAGCAGTTGAT
GGTGCAACAAGTCTTGAATTTAGTCGCTTTTCAATTACTCAAAATAATAGAATTTATATT
GGTGGTGTTCCTGATAATCTTCGACCAAAAGAAATGAAATCAGCTAATGGCTTAAGTGTA
ATAGTTCATCAAGTATCATTAGATAATTCACAAATAGGTCTTTGGCATTTTGCATCGTCT
GATGGTAATTGCGATGGTGCAATGGCAGGACCCACAGAATCATCTGACAGTCAAAATGCA
CGACATTTTAATGGTTATGGTTATTCAGTTGTTCACAGCATTAGTTCAAGACCTTATCCA
AAGAGAGTTTTCTCACTTCAAATGACTTTCAAAACTTTAGATGAAAATGCATTACTATTT
TTGACAGTTGACGAGAAAAATAATCGTTCAATTTCATTGACATTACATGAAGGTAAACTT
GTCTTTAGAATAGACTATGGTGATGAATCATTGCTTGAAATAAACACAACAACACAATTT
AATACTGGTGAATGGGTTAATGTTGAAGCAGCAAGAGAATTTACACCAAGAAGAAATACA
GAAAATGGAAGCCTTAAAGTGAACAATGAGGAAGCACAAACAGGTTCACCTTCAAAACCA
ATAACAAATGCAATGCTGCCAGAAGTATCTAAAGCTCCATTCTATATTGGTGGTGTGCCA
CCAGGTTTTATATCAGGCACAACTAAAGCACCTGGTGCTGATCATGCTTTCTTTGGTTGT
ATGCGTGATATTCAAATCAATGGAGAATTTCTTGATCCATTTGAAAGCCAAAATTATTAT
GGAATTGAACCAACATGCAAGTCAATAATTTCAAAAGTTGGTTTCTTCGGTAATGGTTAT
TTAGAACTTCCATCACATACATTAAGAAAACGAGCAAATTTCGGATTTGTGTTCAGAACT
TTGCAACCTGATTGTCTTCTACTTTTTTCTGGCTTTCCACCTCAAACAGTAGATGAGTTT
GATGAGAAAGATATTCGAGGAAATTTCTCAGTGTCACTTATTAATGGTAATATTCATGTA
TGGATTGCATCAGAAAAAGGATCAATTCAACTTGAGTCAAATGTTACATTGAATGATGGA
GAATTTCATGTTGTGAATGTTAACAAATTTGGTCGAAGATTTGAATTACGAATTGATGAC
AATCTCGATGTAACAAAATCACTGCCGGCTTCAAAAGCCCTTATTTCTAGTCCTGAAGAC
CATGGAGGTCTTTTCTTTGGTGGAGTGCCAGACTTTCCTGAATTTGACAATTTAATGCCA
ACAATGAATGGTTTGAGAGGTGGAATTAAAGATGTTGTATTTAACAACAAGACAATTTCA
TTTGATTCACCAATAAGCTTTAAGAATGTGAAATTTGGTGCTCTTGGTCCAATTATGGGA
AGCACATTTGAATTAGAAATCAAAACTGAGCCACTTGGAGCGAAATTTAAAGAAGTTAAA
GAAGGATGTCAGAGGGTCGGTAGCTACTCATATGAATCGAATGCGTTCAAGTTTGGGAAT
TCTCCATATAGTTATTCAATGATTCAAATTCCACCACGACCAATTTGGCATCGAAATGTA
AACATTCAATTTGATTATCGAACTTTTTATCCTGATGGATTTTTATTTGCTGTTCCTGAT
TCACGAGACAAACCAAAGCATTATGTTTATCTTTTCCTTCGCAATGGCAACATTGTTCTC
ACAATTCGAGGTCGTAAGCGAGAAGAAATTTCCATTCCAATAAAATCTAACAATGGTCAA
TGGCATCATGTCACAATTGACAGTAAAAATCATGTTCTTACATTAACAGTGACGAGCAAT
GGCAAAATTAAGAATGAGAGCCAAAAGAGTTTAAAAATACCAAAGAAATTTTTCGCATCA
AATATTTTCCTGATTGGTGGTTTGCCACAAAGCGTGCCAACACTTCATAAAGAAGTTGTA
ACAAAAAAAGAAGACTTTAAAGGCTGCATAAGAAGATTTACAGTTAATGGAATAACACAA
GATTTGACGAGGCAGTTTAATAATTTAGGACAATGTTTTCCAAGAATTGAAAAAGGATCT
TATTTTTCTGGTGATGCTTATGCTGAATATAAAAAAGAATTCAATGTTGGAAAGCACCTT
GAGATCGAAATGGAATTCAAAACATCTGAATTGAATGGAATTTTATTGAGTATCTCAGAG
CCTTCAGGAACGCCGAGTCTTTCAATTGAAATATCAGATGGAAATCTAATAATGTCATGT
GACTTTAACAATGGTGAAATATTGCGCGCTGAGGCGAAGCTCTCTTCGAAATTTTCAATC
TGTGATAATAAATGGCACACTATAAATGCGTTTTACGATACCCATCAAATAGCAATAAGA
ATTGATAGTAAGGAATCTGTAGTTGCATCGTCGAGTAAAAATGTTGGTAAATTGCAGACA
AAATCGCCACTTTTTATTGGCGGAATATCAGAATCATCAACTTCACGTTCAATTATCATG
AGGGAAAACTTTAAAGGCTGCATTCGTAATGTCAAGCTCAATTCAGGTTTTAATGGTTTA
GAAATTATTGATTGGATCGATATGGATAAATTACACAATGTACTACTCAATGAATGCCCT
CGATAA
>g5873.t1 Gene=g5873 Length=2401
MMEYNAEEVYQRRKRRWLTYGRALLTIGILGLLTVGLYSLTFTRESSSVPDNVEYNSESS
ISQNDIAINNKLVNYDQRIVKRDVNVEKTKQTRQINEHVDYSNPKVTSGSSETLANEISE
ETNLDTQHMKLQQRRQQSNNDVLHKHTSDGGIYIFKGYKCIPISKPSKQLENLRARHRVG
CNCHVSGSEDRVCNSKTGQCKCRPHVIGRTCDRCERGYWNIDSKQGCEKCACNLDGSEHE
NCDIYTGECACRQGVEGIKCDRCKSGYYGFSSTGCKKCNVCDSPSKICDQETGRCICPPL
SHGNDCQHCYPNTWGWENLRGCKNCDCNQSGSLKQSCEVLTGQCECKEGYAGRACDYCAP
GYYGFPNCQKCNCDIRGSKSYDDEIIECDEKGQCPCKELVTGLKCDECRQSTFGLSQYNP
HGCTRCFCFGRSQTCEQNDLIWAQVRLMGPRNISVNYITDYHTPYYHEDIEYIILTHSKN
NHVYRETARYDTRNGLMIMPGHSGDIIIGTRRAFHSPIYIDLPKEFRGDKTSSYGGFLNF
TLSTFEYRTNYHYEHLNSFPLVQLHTHYHLTLNYYHNEYNNDVDSFSVILHESYWRHASN
GYNISRAIMMTALQNIKHIFLRVTTSQDFVSLTVENATMSIGMPRNGNNNAAIASGIEKC
DCPELYSGDSCQDPAEGYYRWRNTTTPTNLLEDLVGKVIPCECNERSDKCDKETGECIDC
KYNTGGFNCEVCDEGFYGNPDDGCQACPCPETNKKFARGCYVDVQGVSCFCKEGYSGPLC
EKCARGFFGQPHEPDGKCESCDCNIEGIVSDECDYLNGQCNCKKGVIGRRCDKCELPRHL
LIDYECQLCDNCTQTLLDSVDEMIYQFQVNIDGIDLHNLKAPWHKLNDLINATDHYSNDF
DEFFQAVDAVDNFNDVASDELLLRSESLLNKANRLSTTADKKTQKIDKLKVDANAILVDS
RDLSGSIQETIINLENYGTSDHHIKLPNALKEARMYYDDVVKQTKHLSIDNDVEKCVKDQ
FEFWTEELKNTKNQKERLEKFLEDQKIFHERLNDLKNLTHRVFRDSTETEAFITKNKKDF
EKLKETVARLNEQSVEVDGILDKNIAAESASLMETVNDNLEKAKATNDDLKSLHNQVEKV
IQEREKEINKVKGQEVVKARKHAESLAERSQVIVDLFQNSKDGAQLAVKAGTAYSNITDS
IIAAREAADKAHEAAVFSNEQLNPTNPDEETMMERGNDLSLESVAIQQDAEQQIEKIREL
KVLLNQQQDLVKNMSATIHNSGKINNEMSAQITKMSNSESRKSVQESSEMIDDVLEKIKN
TDRDVNEVSENIAILREKLSELDPEWESKFSLAEENIAKSLINIRESNKILNTNEQRFGQ
QQNKFQERNGTLSARLQELKDKITKAKHAAESIRVSLESTDDSCVRSFYPPIIGVTTSNQ
IVMTFALNSRSNINSPLIFIQGENNKFIALEMIKRKIYLLWNMGGDSGIITHPLEILTRD
PKYDDAWYKVEVTRNLNLARLSVSRMANNGSFVSSHSAVDGATSLEFSRFSITQNNRIYI
GGVPDNLRPKEMKSANGLSVIVHQVSLDNSQIGLWHFASSDGNCDGAMAGPTESSDSQNA
RHFNGYGYSVVHSISSRPYPKRVFSLQMTFKTLDENALLFLTVDEKNNRSISLTLHEGKL
VFRIDYGDESLLEINTTTQFNTGEWVNVEAAREFTPRRNTENGSLKVNNEEAQTGSPSKP
ITNAMLPEVSKAPFYIGGVPPGFISGTTKAPGADHAFFGCMRDIQINGEFLDPFESQNYY
GIEPTCKSIISKVGFFGNGYLELPSHTLRKRANFGFVFRTLQPDCLLLFSGFPPQTVDEF
DEKDIRGNFSVSLINGNIHVWIASEKGSIQLESNVTLNDGEFHVVNVNKFGRRFELRIDD
NLDVTKSLPASKALISSPEDHGGLFFGGVPDFPEFDNLMPTMNGLRGGIKDVVFNNKTIS
FDSPISFKNVKFGALGPIMGSTFELEIKTEPLGAKFKEVKEGCQRVGSYSYESNAFKFGN
SPYSYSMIQIPPRPIWHRNVNIQFDYRTFYPDGFLFAVPDSRDKPKHYVYLFLRNGNIVL
TIRGRKREEISIPIKSNNGQWHHVTIDSKNHVLTLTVTSNGKIKNESQKSLKIPKKFFAS
NIFLIGGLPQSVPTLHKEVVTKKEDFKGCIRRFTVNGITQDLTRQFNNLGQCFPRIEKGS
YFSGDAYAEYKKEFNVGKHLEIEMEFKTSELNGILLSISEPSGTPSLSIEISDGNLIMSC
DFNNGEILRAEAKLSSKFSICDNKWHTINAFYDTHQIAIRIDSKESVVASSSKNVGKLQT
KSPLFIGGISESSTSRSIIMRENFKGCIRNVKLNSGFNGLEIIDWIDMDKLHNVLLNECP
R
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 58 | g5873.t1 | CDD | cd00055 | EGF_Lam | 181 | 228 | 2.59973E-16 |
| 54 | g5873.t1 | CDD | cd00055 | EGF_Lam | 230 | 276 | 7.53186E-15 |
| 55 | g5873.t1 | CDD | cd00055 | EGF_Lam | 278 | 323 | 1.54244E-6 |
| 59 | g5873.t1 | CDD | cd00055 | EGF_Lam | 325 | 366 | 1.14535E-15 |
| 53 | g5873.t1 | CDD | cd00055 | EGF_Lam | 371 | 424 | 7.22623E-9 |
| 57 | g5873.t1 | CDD | cd00055 | EGF_Lam | 700 | 745 | 4.91125E-11 |
| 56 | g5873.t1 | CDD | cd00055 | EGF_Lam | 746 | 799 | 5.16116E-6 |
| 60 | g5873.t1 | CDD | cd00055 | EGF_Lam | 800 | 835 | 2.75817E-11 |
| 62 | g5873.t1 | CDD | cd00110 | LamG | 1429 | 1579 | 1.32164E-12 |
| 65 | g5873.t1 | CDD | cd00110 | LamG | 1620 | 1787 | 6.12981E-25 |
| 63 | g5873.t1 | CDD | cd00110 | LamG | 1813 | 1975 | 2.21674E-26 |
| 61 | g5873.t1 | CDD | cd00110 | LamG | 2038 | 2196 | 1.61406E-22 |
| 64 | g5873.t1 | CDD | cd00110 | LamG | 2219 | 2374 | 1.28932E-36 |
| 44 | g5873.t1 | Coils | Coil | Coil | 1021 | 1045 | - |
| 48 | g5873.t1 | Coils | Coil | Coil | 1073 | 1093 | - |
| 45 | g5873.t1 | Coils | Coil | Coil | 1113 | 1154 | - |
| 49 | g5873.t1 | Coils | Coil | Coil | 1247 | 1277 | - |
| 47 | g5873.t1 | Coils | Coil | Coil | 1311 | 1338 | - |
| 46 | g5873.t1 | Coils | Coil | Coil | 1382 | 1416 | - |
| 35 | g5873.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 180 | 228 | 2.6E-16 |
| 36 | g5873.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 229 | 277 | 5.0E-11 |
| 32 | g5873.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 278 | 323 | 2.0E-5 |
| 33 | g5873.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 324 | 370 | 1.9E-12 |
| 34 | g5873.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 371 | 425 | 3.4E-9 |
| 31 | g5873.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 666 | 751 | 5.7E-11 |
| 37 | g5873.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 752 | 800 | 4.9E-9 |
| 38 | g5873.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 801 | 853 | 6.4E-8 |
| 39 | g5873.t1 | Gene3D | G3DSA:2.60.120.200 | - | 1406 | 1605 | 2.1E-29 |
| 42 | g5873.t1 | Gene3D | G3DSA:2.60.120.200 | - | 1606 | 1808 | 6.3E-30 |
| 41 | g5873.t1 | Gene3D | G3DSA:2.60.120.200 | - | 1809 | 1995 | 4.7E-32 |
| 40 | g5873.t1 | Gene3D | G3DSA:2.60.120.200 | - | 2037 | 2212 | 2.7E-85 |
| 43 | g5873.t1 | Gene3D | G3DSA:2.60.120.200 | - | 2213 | 2373 | 2.7E-85 |
| 91 | g5873.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1716 | 1737 | - |
| 90 | g5873.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1717 | 1737 | - |
| 14 | g5873.t1 | PANTHER | PTHR10574 | NETRIN/LAMININ-RELATED | 181 | 2362 | 0.0 |
| 15 | g5873.t1 | PANTHER | PTHR10574:SF398 | - | 181 | 2362 | 0.0 |
| 19 | g5873.t1 | PRINTS | PR00011 | Type III EGF-like signature | 193 | 211 | 1.4E-22 |
| 18 | g5873.t1 | PRINTS | PR00011 | Type III EGF-like signature | 337 | 355 | 1.4E-22 |
| 17 | g5873.t1 | PRINTS | PR00011 | Type III EGF-like signature | 730 | 758 | 1.4E-22 |
| 16 | g5873.t1 | PRINTS | PR00011 | Type III EGF-like signature | 813 | 831 | 1.4E-22 |
| 1 | g5873.t1 | Pfam | PF00053 | Laminin EGF domain | 181 | 227 | 2.8E-11 |
| 5 | g5873.t1 | Pfam | PF00053 | Laminin EGF domain | 230 | 278 | 7.5E-11 |
| 3 | g5873.t1 | Pfam | PF00053 | Laminin EGF domain | 325 | 368 | 8.3E-11 |
| 2 | g5873.t1 | Pfam | PF00053 | Laminin EGF domain | 371 | 423 | 6.2E-7 |
| 13 | g5873.t1 | Pfam | PF00052 | Laminin B (Domain IV) | 519 | 649 | 5.5E-21 |
| 4 | g5873.t1 | Pfam | PF00053 | Laminin EGF domain | 701 | 747 | 2.0E-8 |
| 6 | g5873.t1 | Pfam | PF00053 | Laminin EGF domain | 801 | 835 | 9.7E-8 |
| 7 | g5873.t1 | Pfam | PF06009 | Laminin Domain II | 1308 | 1431 | 3.7E-9 |
| 12 | g5873.t1 | Pfam | PF02210 | Laminin G domain | 1456 | 1573 | 4.7E-8 |
| 10 | g5873.t1 | Pfam | PF02210 | Laminin G domain | 1650 | 1789 | 1.7E-17 |
| 8 | g5873.t1 | Pfam | PF02210 | Laminin G domain | 1838 | 1977 | 4.0E-15 |
| 9 | g5873.t1 | Pfam | PF02210 | Laminin G domain | 2067 | 2197 | 3.0E-17 |
| 11 | g5873.t1 | Pfam | PF02210 | Laminin G domain | 2246 | 2375 | 2.5E-21 |
| 50 | g5873.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 19 | - |
| 52 | g5873.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 40 | - |
| 51 | g5873.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 41 | 2401 | - |
| 87 | g5873.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 200 | 232 | - |
| 89 | g5873.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 344 | 373 | - |
| 88 | g5873.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 394 | 428 | - |
| 86 | g5873.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 717 | 749 | - |
| 98 | g5873.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 181 | 229 | 21.661 |
| 95 | g5873.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 230 | 277 | 20.366 |
| 96 | g5873.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 278 | 324 | 8.179 |
| 99 | g5873.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 325 | 370 | 21.032 |
| 97 | g5873.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 371 | 425 | 15.777 |
| 92 | g5873.t1 | ProSiteProfiles | PS51115 | Laminin IV type A domain profile. | 468 | 659 | 19.229 |
| 100 | g5873.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 701 | 746 | 16.615 |
| 94 | g5873.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 747 | 800 | 9.227 |
| 93 | g5873.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 801 | 848 | 13.016 |
| 105 | g5873.t1 | ProSiteProfiles | PS50025 | Laminin G domain profile. | 1416 | 1604 | 14.72 |
| 101 | g5873.t1 | ProSiteProfiles | PS50025 | Laminin G domain profile. | 1618 | 1806 | 31.89 |
| 104 | g5873.t1 | ProSiteProfiles | PS50025 | Laminin G domain profile. | 1810 | 2023 | 24.059 |
| 103 | g5873.t1 | ProSiteProfiles | PS50025 | Laminin G domain profile. | 2035 | 2212 | 28.741 |
| 102 | g5873.t1 | ProSiteProfiles | PS50025 | Laminin G domain profile. | 2217 | 2399 | 33.89 |
| 71 | g5873.t1 | SMART | SM00180 | lamegf_3 | 181 | 227 | 1.1E-14 |
| 69 | g5873.t1 | SMART | SM00180 | lamegf_3 | 230 | 275 | 8.8E-12 |
| 85 | g5873.t1 | SMART | SM00181 | egf_5 | 231 | 276 | 240.0 |
| 75 | g5873.t1 | SMART | SM00180 | lamegf_3 | 278 | 322 | 0.68 |
| 84 | g5873.t1 | SMART | SM00181 | egf_5 | 280 | 307 | 210.0 |
| 74 | g5873.t1 | SMART | SM00180 | lamegf_3 | 325 | 368 | 2.9E-12 |
| 82 | g5873.t1 | SMART | SM00181 | egf_5 | 326 | 369 | 77.0 |
| 73 | g5873.t1 | SMART | SM00180 | lamegf_3 | 371 | 423 | 9.7E-8 |
| 67 | g5873.t1 | SMART | SM00281 | LamB_3a | 514 | 644 | 5.1E-8 |
| 68 | g5873.t1 | SMART | SM00180 | lamegf_3 | 701 | 744 | 3.4E-8 |
| 83 | g5873.t1 | SMART | SM00181 | egf_5 | 702 | 745 | 16.0 |
| 72 | g5873.t1 | SMART | SM00180 | lamegf_3 | 747 | 798 | 8.0E-5 |
| 81 | g5873.t1 | SMART | SM00181 | egf_5 | 748 | 781 | 71.0 |
| 70 | g5873.t1 | SMART | SM00180 | lamegf_3 | 801 | 846 | 7.0E-8 |
| 76 | g5873.t1 | SMART | SM00282 | LamG_3 | 1437 | 1590 | 5.5E-9 |
| 79 | g5873.t1 | SMART | SM00282 | LamG_3 | 1642 | 1789 | 3.4E-22 |
| 78 | g5873.t1 | SMART | SM00282 | LamG_3 | 1830 | 1977 | 1.3E-21 |
| 77 | g5873.t1 | SMART | SM00282 | LamG_3 | 2058 | 2198 | 2.5E-19 |
| 80 | g5873.t1 | SMART | SM00282 | LamG_3 | 2238 | 2376 | 8.7E-30 |
| 25 | g5873.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 181 | 227 | 3.91E-9 |
| 30 | g5873.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 230 | 278 | 3.91E-8 |
| 26 | g5873.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 325 | 373 | 7.53E-10 |
| 28 | g5873.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 701 | 749 | 3.07E-6 |
| 27 | g5873.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 759 | 803 | 1.62E-5 |
| 29 | g5873.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 801 | 839 | 4.19E-5 |
| 21 | g5873.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 1436 | 1603 | 4.75E-14 |
| 23 | g5873.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 1618 | 1808 | 3.73E-28 |
| 22 | g5873.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 1812 | 1989 | 2.24E-25 |
| 24 | g5873.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 2029 | 2212 | 3.73E-26 |
| 20 | g5873.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 2206 | 2400 | 3.45E-32 |
| 66 | g5873.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 42 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5873/g5873.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5873.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007155 | cell adhesion | BP |
KEGG
Orthology
- This transcript has been annotated with K05637 (laminin, alpha 1/2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
