General information for g5895.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Inositol hexakisphosphate kinase 3.
Parent gene
- The parent gene g5895 is located on chr_2: 12638923..12640069 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5895 | g5895.t1 | TSS | g5895.t1 | 12632701 | 12632701 |
| chr_2 | g5895 | g5895.t1 | isoform | g5895.t1 | 12633204 | 12639526 |
| chr_2 | g5895 | g5895.t1 | exon | g5895.t1.exon1 | 12633204 | 12633699 |
| chr_2 | g5895 | g5895.t1 | cds | g5895.t1.CDS1 | 12633204 | 12633699 |
| chr_2 | g5895 | g5895.t1 | exon | g5895.t1.exon2 | 12634426 | 12634546 |
| chr_2 | g5895 | g5895.t1 | cds | g5895.t1.CDS2 | 12634426 | 12634546 |
| chr_2 | g5895 | g5895.t1 | exon | g5895.t1.exon3 | 12635436 | 12635512 |
| chr_2 | g5895 | g5895.t1 | cds | g5895.t1.CDS3 | 12635436 | 12635512 |
| chr_2 | g5895 | g5895.t1 | exon | g5895.t1.exon4 | 12637650 | 12637730 |
| chr_2 | g5895 | g5895.t1 | cds | g5895.t1.CDS4 | 12637650 | 12637730 |
| chr_2 | g5895 | g5895.t1 | exon | g5895.t1.exon5 | 12637861 | 12638161 |
| chr_2 | g5895 | g5895.t1 | cds | g5895.t1.CDS5 | 12637861 | 12638161 |
| chr_2 | g5895 | g5895.t1 | exon | g5895.t1.exon6 | 12638374 | 12639526 |
| chr_2 | g5895 | g5895.t1 | cds | g5895.t1.CDS6 | 12638374 | 12639526 |
| chr_2 | g5895 | g5895.t1 | TTS | g5895.t1 | 12640360 | 12640360 |
Sequences
>g5895.t1 Gene=g5895 Length=2229
ATGGTCTTAAATTTATTTCCAACACTTATGGATGAACTTCAAACGACAGCATTCTCGCTA
CCAATTACGAAATTCCACAACAATGATTCAACACAATTGAACTCATTTTTTAACAAAAAT
ACACAGAAAGATCCCGCCACAGCTGATCATCATTTACAACTTTGCAATAATAATAGTAGT
AATACTAGCACAGTTAACTCTGCAGTCACAGCAACCGCTCGCAAGAGTCTTTCTTCATCA
ACAAATCCTCTCAATGAATTTCTAAAGCCACACAGTATTTTATCGCAAAATAATTCATCA
GAGAGTGACGATGACGATAATTCAAATCATCATGATGAAATAAATTTGTATCCTTTATCC
AATCAAGTCGGTGGTCACACACGACTACTGCTTTTGAATGACAAGACTGTCATAAAGCCT
CTCAATTTTCGTGAATTGGAATTTTATCAAAACATTCCAGGAAATGATATTCAGCATTTT
GTTCCCAAGTATAAAGGTGTGATGCAATGTTCGACGACAGGCGAGCAGTTTGAAAAACGA
TACAGCCCAAATTTCAAAATTGATGAATCGTTGAGACGCCAAAGTTCAACGAAAAGAAAA
CGCGATGAAGTTCTTAGAATGAAAATTCATAAAAATGGAAATGCAACTGAAGTACTAAAA
AGTATTTCTTCTTTAGACAACAGTAATAAGACATATTTTTTAATGTTGGAGAACATTACA
TCAAAATTTCAACAACCATGCATCTTGGACTTGAAAATGGGAACTCGTCAACACGGTGAT
GACGCATCAGCTGAGAAAAAATCTAAACAAATGGCAAAGTGTGCAGCAAGCACAAGTTCA
AAGCTGGGTGTTCGTCTTTGTGGTCTTCAAAAGTATAATGTGCATAATAAGACCGTCATA
AAGCGTGACAAATATTGGGGGAGACAATTGTCAGAGCAGCAGTTTAAAAAAGCAATTCAA
GATTTCTTCCATAATGGTGTGCGTTTACGTACTAAAGTTATTGAAAAAGTGCTGGCACGA
CTTGAAAAATTACATACTGTGATAGAACAACAGTCTAGCTACCGATTTTATTCATGCTCG
CTTCTATTAGTGTACGAGGGTAAAGATGTCGAGTCAGAACGTCTAGAGGCAATGAATTCT
AATTATGATGCTGATATATCAAATTGTTCAGTCGATCACCACAATATGCAATTTAATAAT
GAAAATGATGAACACGATGTTGGTATTGGACATGAAGATGAATCAAATTCAGATCAATTC
ATGTCTGGTGATGAAACAAGGGCAAGAGATTCTGATAATCTCGAGCATATTGAGAGAAAA
TTTCTTGATTTGCCAGAACATCGAGCGCCCTCGCCACATTCTATGGATTCATGGATTAAT
TATAGTAATAGTAGTGATGAATGTTCGACGTCACACGAAGTAATCGTTCGTAAAGGTACA
AAATTAAATTTACACGATGAAACTACACAAGATAATGACGATGTGGATGTTTACGATAAG
ATAAATTTCGTCAATGCCAAATCGATGACTTCGTCGTTTAAAAAAACAAAAATCGATGGT
TCTTCATATCATCATCATCCCTCACAATCATCGCAATCATCTTCATTTGAAAACACTGCC
AAAAATAACCATATATCTGCAGCAGTTAATATAACCAACTCCATTGAAACCACTAGTGAT
CATCGACTTAAGCAATTTCCTGAAGATATAAAATTGACACAAACAAGCACAATAACAACA
GCTGATGATTGCGAAAAAAATAAAGCACATGAAACAGATGATGGTATTGAAGTTGAAGAA
GAAGAAGAGGATGATGATCAGTTATCATCACTAAGCAGTAATATCGATACGATAATTGTA
AGTGAGACAGGTGAAACGAAATTTTACAATGCGTCAGGCGAACAGGAAGAACATCCAAGT
TTAAAAAAGAAGAAATCCTGTGACAGTGTTGACAATAAAGGGAAAAACGAAATAAAATCT
ACAACAACATTTTCACATACAAACGGACATTCGAGCGTTAATAATAGTAATAAGAATGCC
GTCTTTTCGCCACTTGTGGATGTTCGAATAATTGATTTTGCACATACAACCTTTACGACA
AAAGAGCCCTCTCCATTTGTTGACGAGAACGAGGTCAAAAAAATTCATCACGGCCCTGAT
GGAGGTTTTCTTACTGGAATTGCCAGTCTAAAACGTATTCTCTCCGAAATCGTTGTTGAA
GCCATTTAA
>g5895.t1 Gene=g5895 Length=742
MVLNLFPTLMDELQTTAFSLPITKFHNNDSTQLNSFFNKNTQKDPATADHHLQLCNNNSS
NTSTVNSAVTATARKSLSSSTNPLNEFLKPHSILSQNNSSESDDDDNSNHHDEINLYPLS
NQVGGHTRLLLLNDKTVIKPLNFRELEFYQNIPGNDIQHFVPKYKGVMQCSTTGEQFEKR
YSPNFKIDESLRRQSSTKRKRDEVLRMKIHKNGNATEVLKSISSLDNSNKTYFLMLENIT
SKFQQPCILDLKMGTRQHGDDASAEKKSKQMAKCAASTSSKLGVRLCGLQKYNVHNKTVI
KRDKYWGRQLSEQQFKKAIQDFFHNGVRLRTKVIEKVLARLEKLHTVIEQQSSYRFYSCS
LLLVYEGKDVESERLEAMNSNYDADISNCSVDHHNMQFNNENDEHDVGIGHEDESNSDQF
MSGDETRARDSDNLEHIERKFLDLPEHRAPSPHSMDSWINYSNSSDECSTSHEVIVRKGT
KLNLHDETTQDNDDVDVYDKINFVNAKSMTSSFKKTKIDGSSYHHHPSQSSQSSSFENTA
KNNHISAAVNITNSIETTSDHRLKQFPEDIKLTQTSTITTADDCEKNKAHETDDGIEVEE
EEEDDDQLSSLSSNIDTIIVSETGETKFYNASGEQEEHPSLKKKKSCDSVDNKGKNEIKS
TTTFSHTNGHSSVNNSNKNAVFSPLVDVRIIDFAHTTFTTKEPSPFVDENEVKKIHHGPD
GGFLTGIASLKRILSEIVVEAI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g5895.t1 | Gene3D | G3DSA:1.10.510.50 | - | 186 | 412 | 1.2E-55 |
| 13 | g5895.t1 | Gene3D | G3DSA:1.10.510.50 | - | 618 | 741 | 2.0E-5 |
| 11 | g5895.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 108 | - |
| 12 | g5895.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 102 | - |
| 10 | g5895.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 539 | - |
| 8 | g5895.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 610 | - |
| 9 | g5895.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 595 | 609 | - |
| 7 | g5895.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 649 | - |
| 3 | g5895.t1 | PANTHER | PTHR12400:SF21 | KINASE | 105 | 198 | 3.2E-101 |
| 5 | g5895.t1 | PANTHER | PTHR12400 | INOSITOL POLYPHOSPHATE KINASE | 105 | 198 | 3.2E-101 |
| 2 | g5895.t1 | PANTHER | PTHR12400:SF21 | KINASE | 184 | 739 | 3.2E-101 |
| 4 | g5895.t1 | PANTHER | PTHR12400 | INOSITOL POLYPHOSPHATE KINASE | 184 | 739 | 3.2E-101 |
| 1 | g5895.t1 | Pfam | PF03770 | Inositol polyphosphate kinase | 233 | 734 | 1.3E-53 |
| 6 | g5895.t1 | SUPERFAMILY | SSF56104 | SAICAR synthase-like | 119 | 737 | 4.58E-59 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5895/g5895.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5895.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016301 | kinase activity | MF |
| GO:0032958 | inositol phosphate biosynthetic process | BP |
KEGG
Orthology
- This transcript has been annotated with K07756 (inositol-hexakisphosphate 5-kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
