General information for g5895.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g5895 is located on chr_2: 12638923..12640069 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5895 | g5895.t3 | TSS | g5895.t3 | 12632701 | 12632701 |
| chr_2 | g5895 | g5895.t3 | isoform | g5895.t3 | 12632817 | 12633695 |
| chr_2 | g5895 | g5895.t3 | exon | g5895.t3.exon1 | 12632817 | 12633695 |
| chr_2 | g5895 | g5895.t3 | cds | g5895.t3.CDS1 | 12633204 | 12633695 |
| chr_2 | g5895 | g5895.t3 | TTS | g5895.t3 | NA | NA |
Sequences
>g5895.t3 Gene=g5895 Length=879
TGTAATACATTAGATAAATACAAATGTGTGATTAAAATGATAATTTCTATGCTATAAAAT
TACAAGTGAAAAAATTTTTTCGTAACAAAAATTTTATCGAGAGAGTTTGCTTGCTGCTGC
TCGAGAAAAAAGAGTAAATGAAAAAAAATTCAATTTTCAAAGTGCTTAGTTGAAACGAGA
AAAAAGGAAATAATTCCACTTAAAACAGAAAGGAAAATTAGTGTGAGTCACAAAAAAATT
GTGCGTGACATTAAAGTGAAAGTTTATTAAAAAGACTAAGATTCGTTGCTGTCGAAGAAA
TAAAGACAAAAGACAATTTTAAATAAAGTGCAGCGTAAAGTATTTCAGTTGCTTTATATA
TATTTTGAGTTGAAGAAAGGCGACTGAATGGTCTTAAATTTATTTCCAACACTTATGGAT
GAACTTCAAACGACAGCATTCTCGCTACCAATTACGAAATTCCACAACAATGATTCAACA
CAATTGAACTCATTTTTTAACAAAAATACACAGAAAGATCCCGCCACAGCTGATCATCAT
TTACAACTTTGCAATAATAATAGTAGTAATACTAGCACAGTTAACTCTGCAGTCACAGCA
ACCGCTCGCAAGAGTCTTTCTTCATCAACAAATCCTCTCAATGAATTTCTAAAGCCACAC
AGTATTTTATCGCAAAATAATTCATCAGAGAGTGACGATGACGATAATTCAAATCATCAT
GATGAAATAAATTTGTATCCTTTATCCAATCAAGTCGGTGGTCACACACGACTACTGCTT
TTGAATGACAAGACTGTCATAAAGCCTCTCAATTTTCGTGAATTGGAATTTTATCAAAAC
ATTCCAGGAAATGATATTCAGCATTTTGTTCCCAAGTAT
>g5895.t3 Gene=g5895 Length=164
MVLNLFPTLMDELQTTAFSLPITKFHNNDSTQLNSFFNKNTQKDPATADHHLQLCNNNSS
NTSTVNSAVTATARKSLSSSTNPLNEFLKPHSILSQNNSSESDDDDNSNHHDEINLYPLS
NQVGGHTRLLLLNDKTVIKPLNFRELEFYQNIPGNDIQHFVPKY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g5895.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 108 | - |
| 5 | g5895.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 102 | - |
| 1 | g5895.t3 | PANTHER | PTHR12400:SF21 | KINASE | 105 | 164 | 3.5E-12 |
| 2 | g5895.t3 | PANTHER | PTHR12400 | INOSITOL POLYPHOSPHATE KINASE | 105 | 164 | 3.5E-12 |
| 3 | g5895.t3 | SUPERFAMILY | SSF56104 | SAICAR synthase-like | 119 | 164 | 1.11E-8 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5895/g5895.t3; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5895.t3.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016301 | kinase activity | MF |
| GO:0032958 | inositol phosphate biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
