General information for g590.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Sodium-dependent nutrient amino acid transporter 1.
Parent gene
- The parent gene g590 is located on chr_3: 4355274..4357871 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g590 | g590.t1 | TSS | g590.t1 | 4352293 | 4352293 |
| chr_3 | g590 | g590.t1 | isoform | g590.t1 | 4352756 | 4357871 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon1 | 4352756 | 4352839 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS1 | 4352756 | 4352839 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon2 | 4352901 | 4352975 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS2 | 4352901 | 4352975 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon3 | 4353181 | 4353319 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS3 | 4353181 | 4353319 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon4 | 4353381 | 4353399 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS4 | 4353381 | 4353399 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon5 | 4353468 | 4353610 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS5 | 4353468 | 4353610 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon6 | 4353663 | 4353849 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS6 | 4353663 | 4353849 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon7 | 4353902 | 4354276 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS7 | 4353902 | 4354276 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon8 | 4354331 | 4354974 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS8 | 4354331 | 4354974 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon9 | 4355027 | 4355179 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS9 | 4355027 | 4355179 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon10 | 4355236 | 4355274 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS10 | 4355236 | 4355274 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon11 | 4355772 | 4355921 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS11 | 4355772 | 4355921 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon12 | 4356042 | 4356264 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS12 | 4356042 | 4356264 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon13 | 4356323 | 4356528 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS13 | 4356323 | 4356528 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon14 | 4356593 | 4356758 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS14 | 4356593 | 4356758 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon15 | 4356850 | 4357493 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS15 | 4356850 | 4357493 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon16 | 4357551 | 4357645 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS16 | 4357551 | 4357645 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon17 | 4357703 | 4357760 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS17 | 4357703 | 4357760 |
| chr_3 | g590 | g590.t1 | exon | g590.t1.exon18 | 4357822 | 4357871 |
| chr_3 | g590 | g590.t1 | cds | g590.t1.CDS18 | 4357822 | 4357871 |
| chr_3 | g590 | g590.t1 | TTS | g590.t1 | NA | NA |
Sequences
>g590.t1 Gene=g590 Length=3450
ATGTTTGCCGGTGTTGAGTTGTTGAATGAGCATTACGGTACGAATAGACAGAATGGCCAA
AATTTTTTACTTCTTGAGATACAAATGTCCTTGATTTGCAACGAGGAAAATAAAATTAAA
AATAATTGTGAAAAGAAAATTGAAATTATTGGCATCGAGAACTCAAAAAACGAAAAGAAT
TTCATAGCAAAAGATAAATGGGGTAAAGATATTGAGTTTTTACTCTCATGCATAGCACTT
TCAGTAGGATTAGGAAACTTGTTGAGGTTCCCTTTTACGGCTCTTGAAAATGGAGGAGGT
GCTTTTGTGCTTCCATATATCATAGTTCTGTTGCTTGTCGGCAAACCGCTTTATTATATG
GAGTTATTATTGGGACAATTTTCTTCACGTGGTTGCATCAAAGTATATGATATGGCGCCA
GCAATGCGTGGAATTGGCATTGGACAAGTTATGTCAACATGTTTCGTTACAACTTACTAT
GCATCACTAATGGGACTTACAATTCGGTATTTTTTGGCATCATTTAGCAACCCACTGCCA
TGGAGTGAATGCAAAGAAGAATGGAATGTTTCTTGCATTGATAGCAAAATAAAATCTGTC
AATTTCTCAGATGAAATGCCAAAATCATCAGCTGAACTTTATTTTATTAAAGAAATTTTA
AAAGAAGCAACAACAATTGACAATGGAATTGGAACACCAAATTGGCAACTTGTTTTATGT
CTTATTTTTGCATGGATTTGCATTGGTGGAATTCTCATAAAAGGAGTGAAAAGCTCAGGA
AAGGCTTCTTACTTTCTTTCAGCATTTCCGTACTTTGTTATGTTTATACTTCTCATACGA
TCAGCAACATTAGAAGGTGCAGTCAATGGCATGATTTATTTTATAAAACCACAATGGGAT
AAAATCTTTGAAGCTCAAGTCTGGTATGCTGCATGTACACAAGTTTTTTATTCACTTGCT
GTCTGTTTTGGGTCAATTATCATGTACTCGTCCTACAATCGATTTGATCAAAATATTTAC
AAAGACGTAAATGTAATAACACTGCTTGATACTGGAACTTCTTTGCTATCTGGTTTAATT
ATATTTGGTATTATTGGTCATTTAGCACATGTGATGGAAGTCGATGATATTCAAAAAGTG
ACCAAAAGTAATATAGCTCTCGCATTCATGGCTTATCCTGATATTATTGTGAAAATCGGC
TTCTTTCCACAATTTTTCTCAATGTTATTCTTCATTATGCTGTTTGTACTTGGAATTGGT
AGTAATATCGGAATGACATCTTGCATTATGACTGTCATCAAAGATAAATTTCCAAGAATT
GAATGCTGGAAAATTGTTGCCGGCATTGCAATTGTAGGAATTACTATTGGAAGCATTTAC
ACAACTCCTGGTGGACAATTTTTAATTAATTTTCTCGATTTTTATGGTGCTTCATTTGTT
GCTTTAATTTTGGCCATTATTGAACTTTTGACTGTCAGTTGGATTTATGGAGTTGATAGA
TTTTGCAAAGATATTGAATTCATGTTGAAGAGAAAAACTGGACTTTATTGGAGACTATGT
TGGAAGTATATAACACCTTTTATTATGATTTCAATTTTTGTTTATTTTTTGGCAACTTGG
AAACCAATTACATATCAAGGCTATGAATATCATCCAAATATGCATGTATTTGGCTGGTGT
TTGTCATTATTTTGTTTACTTCAACTGCCAATTTGGGCTGTCTATACAATAATGAAACAA
GAGGAAAAAACATTATATGAAAAGTTCATTAATGCATTCAAACCAAATTCTTATTGGGGT
CCAAATGATCCCGAAAAAATGGAACAATATAGAGAATTTCGAACACTTAAATCTCATTCT
TTGCAGTATGGTGGCGGAACATTTGTTATACCTTACACTTTTATCGTGATTTTAGTTGGA
AAGCCACTTTACTATTTAGAAATACTTTTGGGTCAATTTTCGTCTAAAGGATGTGTAAAC
GTTTATGATATGGCACCTGCAGTAAGAGGTGTTGGTTACGGTCAATGTATATGTACAATA
ATTGTTTTATCAATTTATGCATCAGTCATGGCATTGACAATCCGCTTTTTTCTTGCTTCA
TTTGGTGATCCTTTACCTTGGAGTCAATGTAAAGATAGTTGGAACGCAACATGTGTTGAT
AGTGGAATAAAAATTGGAAATTTATCTACAAATGTTACAAATGTAAAATCATCTGCTGAA
TTATTCTTTGTCAAAGATATTCTCAAAGAATCATCAACATTCGAAAGCTTAGGTTTTCCA
AACATTCAACTAGTAATTTGTTTAATTATTGCTTGGTGTGTGATTGGTATTGTACTTGTA
AAAGGCATTCAAAGCTCAGGAAAAGCAGCTTATTTTCTTGCTGTTTTTCCTTATATTGTA
CTCATAATTCTACTGATAAGAGCTTCTACTTTAGAAGGCGCAATCGACGGAATTCTTTAT
TTCATCATTCCTGACTTGAATAAAATTTTTGATGCTGAACTATGGTATGCAGCGGTCACT
CAAGTGTTTTATGCTTTAGGAATTTGCTTTGGATCAATTATTATGTATTCTTCCTACAAT
CGTTTTGATCAAAATGTCTATCGAGATGTAAACATCATAACAACAATGGATTATTTAACT
TCACTACTTGCTGGTTTAATTATATTTGGAATTCTTGGGCATTTAAAATTTGTGATGGGT
ATTGAAGATATTCAAGAAGTCACAACAAGTTTTATGGGTCTCACATTCATTGCATATCCT
GAAGCTATTGCAAAATTTGACTATATTCCACAATTTTTTGCCATTGTATTTTTTCTTATG
TTGTTTTTCTTCTGTGTTGGAAGCAATATGGGAATGGCTTCATGCATTCTTACTGTTATT
CGTGATCGCTATCCTGAGATAAAATGCTGGAAAATTGTATTAGGAATTGTGATTTTTGGA
ATTACTATTGGAACTTTTTATACAACACCAAGTGGTCAATATTTAATTAATTTTCTCGAT
TTTTATGGTGCTTCATTTGTTGCTTTAATTTTGGCCATTATTGAACTTTTAACTGTTAGC
TGGATTTATGGAGTTGATAGATTTTGCAAAGACATTGAATTCATGTTGAAGAGAAAAACT
GGACTTTATTGGAGACTGTGTTGGAAGTATATAACACCTTTTATTATGATTTCAATTTTT
GTTTATTTTTTGGCAACTTGGAAACCAATTACGTATGGAAAAATTGAATATTCTAACAAA
ATGCATGCATTCGGATCGTGTATTTCGCTTTTTGGACTTTTACAACTTCCAATATGGATG
ATGTATGCTTTTTTAAAACAACCAGAAGGAAATTTTATTGAAAAATTCAAAACTATTTTC
AAGCCAAACAAGAAATGGGGACCAGTTGATTCTAGAATAAGAACACAATATAATAGATTT
ATGGAGATAAAGTTTAAAGAAACAAAATAA
>g590.t1 Gene=g590 Length=1149
MFAGVELLNEHYGTNRQNGQNFLLLEIQMSLICNEENKIKNNCEKKIEIIGIENSKNEKN
FIAKDKWGKDIEFLLSCIALSVGLGNLLRFPFTALENGGGAFVLPYIIVLLLVGKPLYYM
ELLLGQFSSRGCIKVYDMAPAMRGIGIGQVMSTCFVTTYYASLMGLTIRYFLASFSNPLP
WSECKEEWNVSCIDSKIKSVNFSDEMPKSSAELYFIKEILKEATTIDNGIGTPNWQLVLC
LIFAWICIGGILIKGVKSSGKASYFLSAFPYFVMFILLIRSATLEGAVNGMIYFIKPQWD
KIFEAQVWYAACTQVFYSLAVCFGSIIMYSSYNRFDQNIYKDVNVITLLDTGTSLLSGLI
IFGIIGHLAHVMEVDDIQKVTKSNIALAFMAYPDIIVKIGFFPQFFSMLFFIMLFVLGIG
SNIGMTSCIMTVIKDKFPRIECWKIVAGIAIVGITIGSIYTTPGGQFLINFLDFYGASFV
ALILAIIELLTVSWIYGVDRFCKDIEFMLKRKTGLYWRLCWKYITPFIMISIFVYFLATW
KPITYQGYEYHPNMHVFGWCLSLFCLLQLPIWAVYTIMKQEEKTLYEKFINAFKPNSYWG
PNDPEKMEQYREFRTLKSHSLQYGGGTFVIPYTFIVILVGKPLYYLEILLGQFSSKGCVN
VYDMAPAVRGVGYGQCICTIIVLSIYASVMALTIRFFLASFGDPLPWSQCKDSWNATCVD
SGIKIGNLSTNVTNVKSSAELFFVKDILKESSTFESLGFPNIQLVICLIIAWCVIGIVLV
KGIQSSGKAAYFLAVFPYIVLIILLIRASTLEGAIDGILYFIIPDLNKIFDAELWYAAVT
QVFYALGICFGSIIMYSSYNRFDQNVYRDVNIITTMDYLTSLLAGLIIFGILGHLKFVMG
IEDIQEVTTSFMGLTFIAYPEAIAKFDYIPQFFAIVFFLMLFFFCVGSNMGMASCILTVI
RDRYPEIKCWKIVLGIVIFGITIGTFYTTPSGQYLINFLDFYGASFVALILAIIELLTVS
WIYGVDRFCKDIEFMLKRKTGLYWRLCWKYITPFIMISIFVYFLATWKPITYGKIEYSNK
MHAFGSCISLFGLLQLPIWMMYAFLKQPEGNFIEKFKTIFKPNKKWGPVDSRIRTQYNRF
MEIKFKETK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 67 | g590.t1 | CDD | cd10324 | SLC6sbd | 65 | 537 | 6.99341E-162 |
| 66 | g590.t1 | CDD | cd10324 | SLC6sbd | 622 | 1064 | 6.38931E-133 |
| 4 | g590.t1 | PANTHER | PTHR11616 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER | 35 | 611 | 0.0 |
| 6 | g590.t1 | PANTHER | PTHR11616:SF269 | TRANSPORTER | 35 | 611 | 0.0 |
| 3 | g590.t1 | PANTHER | PTHR11616 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER | 620 | 1137 | 0.0 |
| 5 | g590.t1 | PANTHER | PTHR11616:SF269 | TRANSPORTER | 620 | 1137 | 0.0 |
| 12 | g590.t1 | PRINTS | PR00176 | Sodium/chloride neurotransmitter symporter signature | 72 | 93 | 4.9E-47 |
| 14 | g590.t1 | PRINTS | PR00176 | Sodium/chloride neurotransmitter symporter signature | 101 | 120 | 4.9E-47 |
| 9 | g590.t1 | PRINTS | PR00176 | Sodium/chloride neurotransmitter symporter signature | 144 | 170 | 4.9E-47 |
| 11 | g590.t1 | PRINTS | PR00176 | Sodium/chloride neurotransmitter symporter signature | 262 | 279 | 4.9E-47 |
| 7 | g590.t1 | PRINTS | PR00176 | Sodium/chloride neurotransmitter symporter signature | 344 | 364 | 4.9E-47 |
| 10 | g590.t1 | PRINTS | PR00176 | Sodium/chloride neurotransmitter symporter signature | 400 | 419 | 4.9E-47 |
| 8 | g590.t1 | PRINTS | PR00176 | Sodium/chloride neurotransmitter symporter signature | 478 | 498 | 4.9E-47 |
| 13 | g590.t1 | PRINTS | PR00176 | Sodium/chloride neurotransmitter symporter signature | 518 | 538 | 4.9E-47 |
| 1 | g590.t1 | Pfam | PF00209 | Sodium:neurotransmitter symporter family | 65 | 579 | 1.2E-147 |
| 2 | g590.t1 | Pfam | PF00209 | Sodium:neurotransmitter symporter family | 622 | 1106 | 7.2E-129 |
| 20 | g590.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 72 | - |
| 45 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 73 | 92 | - |
| 36 | g590.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 93 | 97 | - |
| 53 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 98 | 120 | - |
| 17 | g590.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 121 | 236 | - |
| 46 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 237 | 256 | - |
| 35 | g590.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 257 | 267 | - |
| 52 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 268 | 295 | - |
| 29 | g590.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 296 | 306 | - |
| 44 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 307 | 332 | - |
| 34 | g590.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 333 | 351 | - |
| 58 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 352 | 372 | - |
| 24 | g590.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 373 | 383 | - |
| 65 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 384 | 402 | - |
| 41 | g590.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 403 | 407 | - |
| 59 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 408 | 433 | - |
| 22 | g590.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 434 | 444 | - |
| 50 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 445 | 462 | - |
| 33 | g590.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 463 | 473 | - |
| 55 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 474 | 498 | - |
| 21 | g590.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 499 | 518 | - |
| 48 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 519 | 536 | - |
| 38 | g590.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 537 | 555 | - |
| 43 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 556 | 578 | - |
| 25 | g590.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 579 | 620 | - |
| 62 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 621 | 640 | - |
| 31 | g590.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 641 | 671 | - |
| 60 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 672 | 698 | - |
| 19 | g590.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 699 | 761 | - |
| 42 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 762 | 783 | - |
| 30 | g590.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 784 | 788 | - |
| 56 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 789 | 822 | - |
| 28 | g590.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 823 | 833 | - |
| 64 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 834 | 858 | - |
| 40 | g590.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 859 | 877 | - |
| 47 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 878 | 895 | - |
| 18 | g590.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 896 | 906 | - |
| 61 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 907 | 926 | - |
| 37 | g590.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 927 | 931 | - |
| 51 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 932 | 960 | - |
| 27 | g590.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 961 | 971 | - |
| 54 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 972 | 989 | - |
| 32 | g590.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 990 | 1000 | - |
| 57 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1001 | 1025 | - |
| 23 | g590.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1026 | 1045 | - |
| 49 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1046 | 1063 | - |
| 39 | g590.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1064 | 1082 | - |
| 63 | g590.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1083 | 1105 | - |
| 26 | g590.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1106 | 1149 | - |
| 90 | g590.t1 | ProSiteProfiles | PS50267 | Sodium:neurotransmitter symporter family profile. | 63 | 582 | 79.094 |
| 91 | g590.t1 | ProSiteProfiles | PS50267 | Sodium:neurotransmitter symporter family profile. | 622 | 1109 | 68.324 |
| 16 | g590.t1 | SUPERFAMILY | SSF161070 | SNF-like | 64 | 578 | 2.09E-148 |
| 15 | g590.t1 | SUPERFAMILY | SSF161070 | SNF-like | 621 | 1104 | 3.53E-125 |
| 79 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 71 | 93 | - |
| 85 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 103 | 125 | - |
| 89 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 146 | 168 | - |
| 80 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 233 | 255 | - |
| 78 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 262 | 284 | - |
| 74 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 308 | 330 | - |
| 71 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 343 | 365 | - |
| 84 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 399 | 421 | - |
| 70 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 442 | 464 | - |
| 88 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 474 | 496 | - |
| 82 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 517 | 539 | - |
| 72 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 554 | 576 | - |
| 86 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 677 | 699 | - |
| 69 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 758 | 780 | - |
| 68 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 789 | 811 | - |
| 73 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 837 | 859 | - |
| 83 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 879 | 901 | - |
| 77 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 935 | 957 | - |
| 76 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 969 | 988 | - |
| 81 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1003 | 1025 | - |
| 75 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1046 | 1068 | - |
| 87 | g590.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1083 | 1105 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g590/g590.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g590.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
- This transcript has been annotated with K05038 (solute carrier family 6 (neurotransmitter transporter, glycine) member 5/9)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed