General information for g5913.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ALK tyrosine kinase receptor.
Parent gene
- The parent gene g5913 is located on chr_2: 12807984..12809337 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g5913 | g5913.t1 | isoform | g5913.t1 | 12799363 | 12807984 |
| chr_2 | g5913 | g5913.t1 | exon | g5913.t1.exon1 | 12799363 | 12799755 |
| chr_2 | g5913 | g5913.t1 | cds | g5913.t1.CDS1 | 12799363 | 12799755 |
| chr_2 | g5913 | g5913.t1 | exon | g5913.t1.exon2 | 12799838 | 12800280 |
| chr_2 | g5913 | g5913.t1 | cds | g5913.t1.CDS2 | 12799838 | 12800280 |
| chr_2 | g5913 | g5913.t1 | exon | g5913.t1.exon3 | 12800384 | 12800540 |
| chr_2 | g5913 | g5913.t1 | cds | g5913.t1.CDS3 | 12800384 | 12800540 |
| chr_2 | g5913 | g5913.t1 | exon | g5913.t1.exon4 | 12800604 | 12800683 |
| chr_2 | g5913 | g5913.t1 | cds | g5913.t1.CDS4 | 12800604 | 12800683 |
| chr_2 | g5913 | g5913.t1 | exon | g5913.t1.exon5 | 12800745 | 12801193 |
| chr_2 | g5913 | g5913.t1 | cds | g5913.t1.CDS5 | 12800745 | 12801193 |
| chr_2 | g5913 | g5913.t1 | exon | g5913.t1.exon6 | 12801251 | 12801458 |
| chr_2 | g5913 | g5913.t1 | cds | g5913.t1.CDS6 | 12801251 | 12801458 |
| chr_2 | g5913 | g5913.t1 | exon | g5913.t1.exon7 | 12801745 | 12801843 |
| chr_2 | g5913 | g5913.t1 | cds | g5913.t1.CDS7 | 12801745 | 12801843 |
| chr_2 | g5913 | g5913.t1 | exon | g5913.t1.exon8 | 12801905 | 12802240 |
| chr_2 | g5913 | g5913.t1 | cds | g5913.t1.CDS8 | 12801905 | 12802240 |
| chr_2 | g5913 | g5913.t1 | exon | g5913.t1.exon9 | 12802366 | 12802503 |
| chr_2 | g5913 | g5913.t1 | cds | g5913.t1.CDS9 | 12802366 | 12802503 |
| chr_2 | g5913 | g5913.t1 | exon | g5913.t1.exon10 | 12802568 | 12802745 |
| chr_2 | g5913 | g5913.t1 | cds | g5913.t1.CDS10 | 12802568 | 12802745 |
| chr_2 | g5913 | g5913.t1 | exon | g5913.t1.exon11 | 12802831 | 12803122 |
| chr_2 | g5913 | g5913.t1 | cds | g5913.t1.CDS11 | 12802831 | 12803122 |
| chr_2 | g5913 | g5913.t1 | exon | g5913.t1.exon12 | 12804766 | 12804931 |
| chr_2 | g5913 | g5913.t1 | cds | g5913.t1.CDS12 | 12804766 | 12804931 |
| chr_2 | g5913 | g5913.t1 | exon | g5913.t1.exon13 | 12805004 | 12805678 |
| chr_2 | g5913 | g5913.t1 | cds | g5913.t1.CDS13 | 12805004 | 12805678 |
| chr_2 | g5913 | g5913.t1 | exon | g5913.t1.exon14 | 12806583 | 12806830 |
| chr_2 | g5913 | g5913.t1 | cds | g5913.t1.CDS14 | 12806583 | 12806830 |
| chr_2 | g5913 | g5913.t1 | exon | g5913.t1.exon15 | 12806900 | 12807984 |
| chr_2 | g5913 | g5913.t1 | cds | g5913.t1.CDS15 | 12806900 | 12807984 |
| chr_2 | g5913 | g5913.t1 | TSS | g5913.t1 | 12808889 | 12808889 |
| chr_2 | g5913 | g5913.t1 | TTS | g5913.t1 | NA | NA |
Sequences
>g5913.t1 Gene=g5913 Length=4947
ATGAAACATCAAATCTTGTATTTGCTGTTAGTTGCAGCCGCTTTTACAAATGCACAACGT
CCATTGAATACAACAAACACATCAGGCGTGCTTACTGAGCCTTTTTTTATAAAGCCAACA
AGCATGTCAACATCAAAATACTATCCAGAACAACGCGGAGGCGGCAATCCCTATTTCAAT
TCTAATGATTCGCCTGGAAAGGGCAGAAGTAATAGCGGAGGCGGAAACGAACGACTTTTT
CAAGCATCACAACATCCAAATGTTGATATTTTAATTCCGCCATTGAATGGAATTGTTGGT
GATCCTGGAAGTGCACAATCACAAGTGCCAGCATCAAATCGACTGCATAAAGTTAGCAAA
TCACGACAAACAAAATTTAATCAACTTTATCAGCTCGCTAAAAATCCCAATTTTACACTA
AACAATCCTAATCGTGAAAAGAATCAAAATTTTTCATTTGGTCATCGTAATGATTATCAT
CATGGTAATATTATAACATCAAAGAAAGAAGCAAGACCTGAAAGAATTTATAGTAGTCCA
ACTGATACATTTGATCAACCAAAAGCAACATGGTCTGAAGGTCATTCATTTCAAGAAGTA
AAATATCAACTAAATGATAAAAATCATATGCATACACCATCACCACCATCATATTCAGTC
GATGACATTGATTTTGATGAAAAACTCGGTGTAAAATGCACATTTGAAAAGCCTTGTGCT
TGGACTTATGACACTGATGTTGTCGGTACAAATTTTGAAGTGACAACAGGTGCAAATTTA
ACAAGTGCTAATATAACTGGTGTCATGTCAGGACCATCAGCAGACGATTTAAAAGATGCC
AATGGTCATTTTTTGCATTTACCATTAACTCCAAATACAACAACAAGAATTCTTAGATCA
CCTGTATTTAGTTCAACACGTGAACGCTGCTATCTTGAAGTATTTATGCATCAAAGTTCA
ATGGCCTATGGTTCGATCAAAATTGTCATCGAACCAGCAGCATCACGTGAAAATTCTTGG
GTTCCTGCTGAGATCGTGGGCGATGATTTAAGAAAATGGAAACATCATGCATTTGAAATT
GACAGAATCACATTTGATTTTCGAATTCTATTGGAAATTGTGCCAAATGGATTGGGTGGT
GCACTTCGTGGTCATGTGAGCATTGATAATCTTAAAATGAGTAATTGCTTTGCTGATCCA
CCACGTAAAGATTCATGTAGTCTTTCACAAATTAAATGCAATCAAAATAAAATTGCCGTT
TGTATTGAAAATGCTCGCATCTGTGATTTAGTGCAAGATTGTGATGATGCAGAGGATGAA
AATTTAAATTGCGACAAAATACCATTTGGAGGATTATGTGATTTTGAAAATGGCTGGTGT
GGTTGGCAAAATTCGGGAAAAGCCATGTTAGATTGGATGCGTCATATAGGTCCAACACCT
ACAGAGAAAACTGGTCCCGAATTTGACCATACTTATCAGCATACAAATAAATCTGGTCAT
TATATGTTTGTAAATATGGACCAACATGCAAATGATCCAGAAAGAAAAAGTCTCGCAGGA
TTTGCGAGTAATGCTATCATAAATTCGGTGATTTTTAATCCACCACCACCATGTCATTCA
AATATAACTTCACCCTACCGTAATACATGCATGGCACGACTTTTTGTGCATCAATTTGGC
CTAAATCCTGGTAGTTTTAATGTATCGGTAGTTGAAATGAAGGCAAAGGAAAATATCACA
ACTACATTATGGTGGAGCTCACGGTCGATTGGCGACAAGTGGGAGCGTGTCGAAGTAGTG
CTTCCAAACATTACGTCCAAATACTATTTTCAAATTGAGGCACGAAAAGGCATGCGAATT
TACAGTGACGTGGCCATAGACGATTTTTCAATGAGCCCCGAGTGCTTTGGCTTCAACATC
CCACTCGAGCATCTAAATAATTATAACTATTGGGATCCAAGAATTGGAATCCACAAAAAA
CCCCATAGCGATTTTGTAGATAAGAAATTTTATGAACTATCAACATGTGGTGCACATGGC
ATTTATGGTCCCACACCTGAAGCTTGCTCAATTCACTATAATAACACTGAAATGATGAAT
CATGTACGTGTATCAGATAAAGTACCTTTTAAAGGTGTACAAATATGGAAAGTACCTAGC
GAAGGATATTACACAATAATAGTAAAAGGAGCGAGTGGTGGTTTAGGAAGTGGTGGTGTT
TCATCATCACGTGGAGCAATTGTTAGCTCAGTAATGGAACTACACAAGGGAGAAGAAATT
TACATTCTCGTTGGTCAAAAAGGCGAGAATGCATGTATAAAATCAATGGGAATTTCAGAT
GAAGCATGCTCACCTAAAATTTCCAAATATCCTGATCAAAATTCTGTCAACATAATCAAT
CAATTGCGAAATGGTTTACTCGAGAATGGCGCTGGTGGTGGTGGTGGAGCAAGCTTTGTA
TTTTTGTTGAATCAAGTGAACAAAGCTGTTCCATTGATCGTAGCAGGTGGAGGCGGCGGT
TTGGGAATTGGACGATATCTTGATGAAGATATTCAACAGGCAAAAGCATTTGTGCCAGAA
CGTGGTGATGTTACTGGCATTCAAGAGCTTGATATTGGTGAATCAATTGTTGCAGGCCCT
GGAGGTGGTTGGCGACCTCGACATGATTCAGCTCTAAGTATACATTCTGGTGCATCACTT
TTAGAAGGAGCAAGAGGTGGAATAGCATGCTATAATACTATTGGGCAAGACCATAAATAT
GGCAATGGAGCATTTGGTGGTGGCGGCGGCTCATGTCAGTCAGGTGGTGGAGGCGGTGGA
TATGCTGGAGGCAATTCAATGTTGAACTTTACAACAAACTCCTCAGCCAATCCTGATGCA
TTTTCAACTAATGGTGAAGGTGGAACTTCTTATTTGAGTCAAACACGAAGCATTAAGGAG
CTATCGTTTGTTTATCCTGGCTCAAATAGTGGTCATGGATCAGTTATATTGATTCCAGCC
ATTGAAGGTTGCGGTTGTGACTACCGGTGTGTTGCACTTGATGAATATCGATCACTTGTT
GCATGCATTTGTCCAGAAGGATGGCGATTAAAACCTGATAATTTAACATCATGCGAAATT
CTTGAAGAACCAAGCAATGATAAAGTATTAGTCGTAATACTCGGAATTGTATCATTCCTT
TTGGTTTCATTCTTAGTATTATTGATGTGCATGTTGTACACTCGTTTCCAAAGAAGACGA
CAAGCCGAGACGCGCCACAAAATGCTACTCGAACAAGAAGTTCAATTAAGTCGTTTGCGA
CACACCGACGATTCAGCTTTAACAAATTTTAACCCAAATTATGGTTGTGATGGAATTCTC
AATGGCGGAAATGTTGACGTTAAAAGTCTGCCACAAGTTGCACGTGAAAGTCTACGACTT
GTAAAAGCACTTGGACAAGGAGCATTTGGTGAAGTATATCAAGGACTTTATCGTCATCGT
GATGGTGACACAGTTGAGATGCCTGTTGCTGTTAAAACCCTGCCGGAACTGTCAACTGGA
CAGGCCGAATCTGATTTCCTTATGGAAGCTGCCATAATGGCAAAATTTAACCATCCAAAT
ATTGTCCATTTAATTGGCGTATGTTTCGATCGACATCCACGCTTTATTGTTCTTGAGTTG
CTAGCTGGCGGTGATTTAAAGAATTTCTTGCGTGAAGGTCGCAACAAGCCCGAACGTCCA
TCACCATTAACTATGAAAGATCTGATATTTTGCGCACTGGACGTTGCTAAGGGTTGCCGT
TATATGGAGAGCAAACGCTTTATTCATCGAGATATCGCTGCAAGAAATTGTCTACTTAGT
AGCAAAGGTCCAGGTCGAGTTGTCAAGATTGCAGATTTTGGCATGGCTCGAGATATTTAC
AGATCAGACTATTATCGTAAAGGAGGAAAAGCAATGCTTCCAATAAAATGGATGCCGCCT
GAAGCATTTTTGGATGGAATTTTCACGTCAAAAACAGACATCTGGAGTTATGGTGTACTG
TTGTGGGAAGTATTTTCACTTGGTCTCATGCCTTATACGGGGCTGCCAAATCGTGACGTC
ATGCAGTTAGTAACTGGAGGAGGACGACTTGATGCACCACCTGGCTGTCCAGCTGCAATT
TATCGAATAATGGCAGAATGTTGGAATCCAACGCCTGAAGCACGTCCCACGTTTTCAGTT
CTCTTGGAACGTTTGACTGCATGCACACAAGACCCAGAGATCATGAACGCTGCACTGCCA
AGTTTTTTCCGCCCACAATCAATGGAACGTGATGCTACAATAATGAGACCGTCGGGAAAT
GATGATTTCTGCTTGCAAGTTCCCAATTCTTCTGACTATTTAATACCATTACCTGATTCA
CGCGATTCTCGTGCCATAGCAGAGCGTCTGCTTAATGAAGCAACTTGCGTCACACTACCT
GATACTCTATCAACCTACACACTCACAAACTCGCTTAAAATGCCCGAAGCAAACTGCTGG
GAGACATCTTTTACCAATCCCAAGCTCAACAATGGCGTCGACAATGGAATGGATGATCGT
TTGATAAGTTTAGATACACCGACAACAATTCAACCACCACAAGCATTTTGTAATAGTCCA
GTACAAACACTTTCATCAAGTAACAATAACAACAACAACAGCAATGGCAACAAAGCAAAT
AACAACTCAGCTATCACACTTGATCCGGCCACATTACAACAAGGCTATGCAAATGTAAAA
ATGATGAATGGCACTGATAAGCTGGATAATGTCAATGACATGACAAAGTTTAATGGTGGT
GGTACAACAATGGTCATGATGAATAACAATAATAATGGTACAATTGCTAATGGCAATGGC
ATGATAACCAAAGATAAGAATTCAAATCAACCATTTTCGATACCAATGCAGGGCTATAAT
GAAAATCATGCTGAAATCAGCTGCTAA
>g5913.t1 Gene=g5913 Length=1648
MKHQILYLLLVAAAFTNAQRPLNTTNTSGVLTEPFFIKPTSMSTSKYYPEQRGGGNPYFN
SNDSPGKGRSNSGGGNERLFQASQHPNVDILIPPLNGIVGDPGSAQSQVPASNRLHKVSK
SRQTKFNQLYQLAKNPNFTLNNPNREKNQNFSFGHRNDYHHGNIITSKKEARPERIYSSP
TDTFDQPKATWSEGHSFQEVKYQLNDKNHMHTPSPPSYSVDDIDFDEKLGVKCTFEKPCA
WTYDTDVVGTNFEVTTGANLTSANITGVMSGPSADDLKDANGHFLHLPLTPNTTTRILRS
PVFSSTRERCYLEVFMHQSSMAYGSIKIVIEPAASRENSWVPAEIVGDDLRKWKHHAFEI
DRITFDFRILLEIVPNGLGGALRGHVSIDNLKMSNCFADPPRKDSCSLSQIKCNQNKIAV
CIENARICDLVQDCDDAEDENLNCDKIPFGGLCDFENGWCGWQNSGKAMLDWMRHIGPTP
TEKTGPEFDHTYQHTNKSGHYMFVNMDQHANDPERKSLAGFASNAIINSVIFNPPPPCHS
NITSPYRNTCMARLFVHQFGLNPGSFNVSVVEMKAKENITTTLWWSSRSIGDKWERVEVV
LPNITSKYYFQIEARKGMRIYSDVAIDDFSMSPECFGFNIPLEHLNNYNYWDPRIGIHKK
PHSDFVDKKFYELSTCGAHGIYGPTPEACSIHYNNTEMMNHVRVSDKVPFKGVQIWKVPS
EGYYTIIVKGASGGLGSGGVSSSRGAIVSSVMELHKGEEIYILVGQKGENACIKSMGISD
EACSPKISKYPDQNSVNIINQLRNGLLENGAGGGGGASFVFLLNQVNKAVPLIVAGGGGG
LGIGRYLDEDIQQAKAFVPERGDVTGIQELDIGESIVAGPGGGWRPRHDSALSIHSGASL
LEGARGGIACYNTIGQDHKYGNGAFGGGGGSCQSGGGGGGYAGGNSMLNFTTNSSANPDA
FSTNGEGGTSYLSQTRSIKELSFVYPGSNSGHGSVILIPAIEGCGCDYRCVALDEYRSLV
ACICPEGWRLKPDNLTSCEILEEPSNDKVLVVILGIVSFLLVSFLVLLMCMLYTRFQRRR
QAETRHKMLLEQEVQLSRLRHTDDSALTNFNPNYGCDGILNGGNVDVKSLPQVARESLRL
VKALGQGAFGEVYQGLYRHRDGDTVEMPVAVKTLPELSTGQAESDFLMEAAIMAKFNHPN
IVHLIGVCFDRHPRFIVLELLAGGDLKNFLREGRNKPERPSPLTMKDLIFCALDVAKGCR
YMESKRFIHRDIAARNCLLSSKGPGRVVKIADFGMARDIYRSDYYRKGGKAMLPIKWMPP
EAFLDGIFTSKTDIWSYGVLLWEVFSLGLMPYTGLPNRDVMQLVTGGGRLDAPPGCPAAI
YRIMAECWNPTPEARPTFSVLLERLTACTQDPEIMNAALPSFFRPQSMERDATIMRPSGN
DDFCLQVPNSSDYLIPLPDSRDSRAIAERLLNEATCVTLPDTLSTYTLTNSLKMPEANCW
ETSFTNPKLNNGVDNGMDDRLISLDTPTTIQPPQAFCNSPVQTLSSSNNNNNNSNGNKAN
NNSAITLDPATLQQGYANVKMMNGTDKLDNVNDMTKFNGGGTTMVMMNNNNNGTIANGNG
MITKDKNSNQPFSIPMQGYNENHAEISC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 27 | g5913.t1 | CDD | cd06263 | MAM | 453 | 635 | 1.51615E-33 |
| 28 | g5913.t1 | CDD | cd05036 | PTKc_ALK_LTK | 1131 | 1407 | 0.0 |
| 18 | g5913.t1 | Gene3D | G3DSA:2.60.120.200 | - | 217 | 407 | 1.0E-12 |
| 17 | g5913.t1 | Gene3D | G3DSA:2.60.120.200 | - | 432 | 640 | 2.4E-31 |
| 16 | g5913.t1 | Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1103 | 1220 | 2.0E-36 |
| 19 | g5913.t1 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1221 | 1410 | 2.0E-56 |
| 5 | g5913.t1 | PANTHER | PTHR24416:SF540 | ANAPLASTIC LYMPHOMA KINASE, ISOFORM A | 295 | 1417 | 5.3E-166 |
| 6 | g5913.t1 | PANTHER | PTHR24416 | TYROSINE-PROTEIN KINASE RECEPTOR | 295 | 1417 | 5.3E-166 |
| 10 | g5913.t1 | PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1218 | 1231 | 7.3E-32 |
| 7 | g5913.t1 | PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1261 | 1279 | 7.3E-32 |
| 11 | g5913.t1 | PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1313 | 1323 | 7.3E-32 |
| 8 | g5913.t1 | PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1332 | 1354 | 7.3E-32 |
| 9 | g5913.t1 | PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1376 | 1398 | 7.3E-32 |
| 4 | g5913.t1 | Pfam | PF00629 | MAM domain, meprin/A5/mu | 233 | 396 | 2.5E-18 |
| 3 | g5913.t1 | Pfam | PF00629 | MAM domain, meprin/A5/mu | 453 | 635 | 2.5E-35 |
| 1 | g5913.t1 | Pfam | PF12810 | Glycine rich protein | 720 | 993 | 1.7E-16 |
| 2 | g5913.t1 | Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1139 | 1405 | 3.2E-91 |
| 22 | g5913.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 23 | g5913.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 24 | g5913.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 13 | - |
| 26 | g5913.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 18 | - |
| 21 | g5913.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 1048 | - |
| 25 | g5913.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1049 | 1073 | - |
| 20 | g5913.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1074 | 1648 | - |
| 37 | g5913.t1 | ProSitePatterns | PS01209 | LDL-receptor class A (LDLRA) domain signature. | 421 | 444 | - |
| 40 | g5913.t1 | ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1144 | 1172 | - |
| 38 | g5913.t1 | ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 1267 | 1279 | - |
| 39 | g5913.t1 | ProSitePatterns | PS00239 | Receptor tyrosine kinase class II signature. | 1298 | 1306 | - |
| 42 | g5913.t1 | ProSiteProfiles | PS50060 | MAM domain profile. | 231 | 398 | 14.266 |
| 43 | g5913.t1 | ProSiteProfiles | PS50068 | LDL-receptor class A (LDLRA) domain profile. | 405 | 445 | 10.588 |
| 41 | g5913.t1 | ProSiteProfiles | PS50060 | MAM domain profile. | 451 | 637 | 22.602 |
| 44 | g5913.t1 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1138 | 1414 | 39.17 |
| 35 | g5913.t1 | SMART | SM00137 | MAM_2 | 228 | 398 | 8.9E-5 |
| 33 | g5913.t1 | SMART | SM00192 | LDLa_2 | 405 | 446 | 9.7E-5 |
| 34 | g5913.t1 | SMART | SM00137 | MAM_2 | 448 | 637 | 1.5E-5 |
| 32 | g5913.t1 | SMART | SM00219 | tyrkin_6 | 1138 | 1405 | 2.7E-139 |
| 36 | g5913.t1 | SMART | SM00220 | serkin_6 | 1138 | 1409 | 6.6E-44 |
| 13 | g5913.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 230 | 396 | 5.22E-11 |
| 12 | g5913.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 449 | 635 | 2.22E-24 |
| 14 | g5913.t1 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1130 | 1433 | 4.49E-78 |
| 15 | g5913.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
| 29 | g5913.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
| 30 | g5913.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1050 | 1072 | - |
| 31 | g5913.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1334 | 1356 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
Data is missing for g5913/g5913.t1; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5913.t1.fa.iupred3.txt does not exist
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005524 | ATP binding | MF |
| GO:0006468 | protein phosphorylation | BP |
| GO:0004713 | protein tyrosine kinase activity | MF |
| GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | BP |
| GO:0005515 | protein binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0004714 | transmembrane receptor protein tyrosine kinase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05119 (anaplastic lymphoma kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
