Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g5973 g5973.t7 TSS g5973.t7 13111511 13111511
chr_2 g5973 g5973.t7 isoform g5973.t7 13112492 13113297
chr_2 g5973 g5973.t7 exon g5973.t7.exon1 13112492 13113297
chr_2 g5973 g5973.t7 cds g5973.t7.CDS1 13112492 13113145
chr_2 g5973 g5973.t7 TTS g5973.t7 NA NA

Sequences

>g5973.t7 Gene=g5973 Length=806
ATGAATAAATATAAAGACACTACAATGGAGTTATCATCGCCTTATGCAATTGTAATCGAA
GATCGAGCTCATGCAATATTAAATATTCCTGATGCAGGACCAGAGCATAATATTGAATTA
TGTAGAGGCACAATGATTGAAATCATAAAACCAAGCAGTCAAAACTATTACACAATCATG
ATACATGATTATCATCAAAAGAATTTGGCGTTTGAAAACAATTTATATAAAATAAAAGCA
AGTGTTTTTTGCATTGTACCAAAAGAAATTTGGCCATTTCTTATTGCCATCACCGATTCA
ATTGATAGAGCAAATATTTCTATGGACGAAGCCTTCATCGATTATATACTAAATTTGAGA
ATCAAGGGTTTTGTTTCTGTCAATTCACAATACTTTGGTATGTGCCCTATTCGACAATCA
CTACAATTTTTACCAGATCGAGAGCCACGAGATAAATCAAATGAATATAATTGCATAATT
CGTTACATCGGACCTGTGAAAGAGATTGGTCCAGGCTACTTCTTTGGTTTAGAGCTATTG
GTAAATTTTATTAACGAATATTTTCACGTCCCTCTTTCTTTACCACCTACACAACATATA
CACCCACTTGTATACATCCTAAAGTATATTAACCACTGTCACGACCAAAAATGAAAAAAA
ATTATAAACAGTAAAAATAAGAAAATAATTTTCCACAATTATATTAGGTAAAAATTTTTG
CTCGGTAGTTCATTTTGTTTAAGGCAAACAGTTATTAAATTCTTTTTAGTAGAAATTTGA
TTTTTTTTTCTTATTAAAAATTAATT

>g5973.t7 Gene=g5973 Length=217
MNKYKDTTMELSSPYAIVIEDRAHAILNIPDAGPEHNIELCRGTMIEIIKPSSQNYYTIM
IHDYHQKNLAFENNLYKIKASVFCIVPKEIWPFLIAITDSIDRANISMDEAFIDYILNLR
IKGFVSVNSQYFGMCPIRQSLQFLPDREPRDKSNEYNCIIRYIGPVKEIGPGYFFGLELL
VNFINEYFHVPLSLPPTQHIHPLVYILKYINHCHDQK

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

Data is missing for g5973/g5973.t7; file /home/yuki.yoshida/nias/analysis/reanalysis/18_revice/midgebase/iupred3/g5973.t7.fa.iupred3.txt does not exist

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed