Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g6 g6.t7 TSS g6.t7 60179 60179
chr_3 g6 g6.t7 isoform g6.t7 60318 61382
chr_3 g6 g6.t7 exon g6.t7.exon1 60318 60956
chr_3 g6 g6.t7 cds g6.t7.CDS1 60864 60956
chr_3 g6 g6.t7 exon g6.t7.exon2 61071 61217
chr_3 g6 g6.t7 cds g6.t7.CDS2 61071 61217
chr_3 g6 g6.t7 exon g6.t7.exon3 61281 61382
chr_3 g6 g6.t7 cds g6.t7.CDS3 61281 61382
chr_3 g6 g6.t7 TTS g6.t7 61472 61472

Sequences

>g6.t7 Gene=g6 Length=888
ATGCTCTTATTACAATTTATATTGGTTTTGAGTTTATTTGGCTTATCAATAGCTGATACT
GATAAGAAACTTTCAGTTCGTATTTATTATGAAGCTCTATGTAGTGATAGTTTAAGATTT
TTTCGTAATCAGTTAAAACCCGTGTGGATCAAAAGAAGGAATTTTATCGATTTAAAATTG
ATACCGTTTGGAAAAGCTTTGGTGAGAAAATTGAAAAATTATCATTTTTCATGTTTTCTT
TTCATAACACATTCAAGCGAAAATAATATAATTTCTTATTGTTTCATAGATCATGTTATA
AATTTTTATAAACCTTTTTTTTATTTCCCTTCTCGTTTCAAATGTACAAATAAACAAACA
GTATAGATGGAACGAAAATGATTCTCAATGGAAATTCACATGTCAGCATGGTAACGAACG
ATTCTATGTATATTTTTCAACAGTTGAAAAAGTGAAAAATTTAGGTCGTTTTAAACATAC
ACCTCCATGAATCATTTATTTTTTTTTCATTTTCTGCCAGGTTTTCGAGAGTGTCAGCTC
AACAAAATGCATGCTTGCATTCTAGAGCACTATGAATTCGACGAGGCCTTCAACATCATT
TCATGTCTGATGCAATCCTTTCGCACCAGCGTTGATAACTGCACGCCAGGTTTTGACATA
TCACCGTCTGTATTGAGTTGTTATAATGGCACAAATGTTCATGAAGGAATCCAACTTTTG
AAAGCATATGGAGATGAAACAAACACAATAGATTTAAATTTTGTGCCGAGTATTGAATTG
GATAACCATTTTTCATATGAAGATAACTGGATATTGCTAGAAAATTTAGACATTGAAATA
TGCAAAAGATATAAAGAAAAGTTTGGAATTGCTCTCAACGAATGCTAA

>g6.t7 Gene=g6 Length=113
MHACILEHYEFDEAFNIISCLMQSFRTSVDNCTPGFDISPSVLSCYNGTNVHEGIQLLKA
YGDETNTIDLNFVPSIELDNHFSYEDNWILLENLDIEICKRYKEKFGIALNEC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g6.t7 PANTHER PTHR13234:SF61 GILT-LIKE PROTEIN 2-RELATED 1 113 0
g6.t7 PANTHER PTHR13234 GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT 1 113 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed