General information for g602.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g602 is located on chr_3: 4437608..4441569 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g602 | g602.t10 | TSS | g602.t10 | 4434335 | 4434335 |
| chr_3 | g602 | g602.t10 | isoform | g602.t10 | 4434385 | 4435999 |
| chr_3 | g602 | g602.t10 | exon | g602.t10.exon1 | 4434385 | 4434424 |
| chr_3 | g602 | g602.t10 | exon | g602.t10.exon2 | 4434520 | 4434598 |
| chr_3 | g602 | g602.t10 | exon | g602.t10.exon3 | 4434886 | 4435172 |
| chr_3 | g602 | g602.t10 | exon | g602.t10.exon4 | 4435272 | 4435999 |
| chr_3 | g602 | g602.t10 | cds | g602.t10.CDS1 | 4435338 | 4435997 |
| chr_3 | g602 | g602.t10 | TTS | g602.t10 | NA | NA |
Sequences
>g602.t10 Gene=g602 Length=1134
ATGAAGATTTTGTTCTCAATTATTTGTACTTTTTTGTTCGCGTCTATTGTATCTAGTTCC
GTTATATTGGGACGAGAAAAATGCACATACGGGCCCTCATATTGGTGTAATAACTTAGTA
AATGCAAAAAATTGCGGAGCAGTTAAACACTGTATTAAAACAGTTTGGGAAAAACAACAT
GTACCGGAAGACACTGATTCTATTTGCAAAATTTGTCTTGACATGGTAACCCAAGCCAGA
GATCAACTCGAAAGCAATGAAACTCAAGAAGAGTTGAAAGAAGTTTTCGATGGTTCTTGC
GATTTGATACCGATAAAAGTAGTAAAAACGGAATGCAAACGTTTGGCTGATGATTTCATA
CCAGAACTTGTTGAGGCACTTGCTTCTCAAATGAATCCACAGGCAAGTCGTTTGTTCTAC
AGCTGGACTTTGTAATAATGCAAAGATTGATGCATTATTGGAAGAATATGAAATGCAGAA
GAAAAATAATTTATTAAGTTGCAACCAATGTAACAACATTGGAGAATTGATCACTCAAAA
ATTCCATACATCATCTCGTGATCAAGTTCTAGATGGTTTCTTGAGTGCCTGCGGTCGTCT
TTCATCGTTTTCTGATGCATGTTCTAGTATCATTCTGACTTATTTCAACGAAATCTATGA
AGAACTTTCGAGAAATCTAAATTCTGATAGTATTTGTCATATATCTGGCGTATGCGCAAG
CAAATATCATAATCATGCATCAGCAGAAGTTGAAATTGAAGTAAAATCAAATGTTGGAGT
ACTTAAGAATAAAGAGCTCAAAGATGATATTCCTTGTGAATTATGTGAACAGTTGGTCAA
ACATTTAAGTGATATTCTTGTTGCAAATACAACTGAAACTGAATTTAAAAGCGTCCTTCA
AGGTCTTTGTTCACAAACAAAAGGATTCAAGAGCGAATGTTTAGAACTGGTAAATCAATA
TTATGCAATTATTTACGAGTCTCTCGTTAATAATCTCGACGCAAATGGAGCTTGCTTTTT
AATTGGAGTATGTCGCAAGGGAGATAATAATCATCAAGTCACTCCACACATGCCATTATT
GCCTACTAATCAAAAGAATATACCAAAGCGCAATCGATTAGGAGAGAATGAAAA
>g602.t10 Gene=g602 Length=220
MQKKNNLLSCNQCNNIGELITQKFHTSSRDQVLDGFLSACGRLSSFSDACSSIILTYFNE
IYEELSRNLNSDSICHISGVCASKYHNHASAEVEIEVKSNVGVLKNKELKDDIPCELCEQ
LVKHLSDILVANTTETEFKSVLQGLCSQTKGFKSECLELVNQYYAIIYESLVNNLDANGA
CFLIGVCRKGDNNHQVTPHMPLLPTNQKNIPKRNRLGENE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g602.t10 | Gene3D | G3DSA:1.10.225.10 | Saposin | 6 | 90 | 1.1E-11 |
| 11 | g602.t10 | Gene3D | G3DSA:1.10.225.10 | Saposin | 109 | 189 | 5.3E-18 |
| 15 | g602.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 212 | - |
| 16 | g602.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 220 | - |
| 4 | g602.t10 | PANTHER | PTHR11480 | SAPOSIN-RELATED | 10 | 94 | 1.7E-19 |
| 5 | g602.t10 | PANTHER | PTHR11480 | SAPOSIN-RELATED | 108 | 194 | 1.7E-19 |
| 8 | g602.t10 | PRINTS | PR01797 | Saposin signature | 57 | 75 | 4.0E-5 |
| 6 | g602.t10 | PRINTS | PR01797 | Saposin signature | 112 | 134 | 4.0E-5 |
| 7 | g602.t10 | PRINTS | PR01797 | Saposin signature | 165 | 188 | 4.0E-5 |
| 3 | g602.t10 | Pfam | PF03489 | Saposin-like type B, region 2 | 49 | 81 | 7.2E-5 |
| 1 | g602.t10 | Pfam | PF05184 | Saposin-like type B, region 1 | 114 | 148 | 2.0E-7 |
| 2 | g602.t10 | Pfam | PF03489 | Saposin-like type B, region 2 | 155 | 187 | 4.2E-6 |
| 17 | g602.t10 | ProSiteProfiles | PS50015 | Saposin B type domain profile. | 6 | 85 | 11.733 |
| 18 | g602.t10 | ProSiteProfiles | PS50015 | Saposin B type domain profile. | 111 | 191 | 15.929 |
| 14 | g602.t10 | SMART | SM00741 | sapb_4 | 8 | 81 | 1.2E-5 |
| 13 | g602.t10 | SMART | SM00741 | sapb_4 | 113 | 187 | 1.0E-15 |
| 9 | g602.t10 | SUPERFAMILY | SSF47862 | Saposin | 8 | 85 | 2.2E-10 |
| 10 | g602.t10 | SUPERFAMILY | SSF47862 | Saposin | 111 | 188 | 9.87E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006665 | sphingolipid metabolic process | BP |
| GO:0005764 | lysosome | CC |
| GO:0006629 | lipid metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
