General information for g6032.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Transient receptor potential-gamma protein.
Parent gene
- The parent gene g6032 is located on chr_2: 13684916..13691142 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6032 | g6032.t1 | isoform | g6032.t1 | 13684916 | 13691142 |
| chr_2 | g6032 | g6032.t1 | exon | g6032.t1.exon1 | 13684916 | 13685054 |
| chr_2 | g6032 | g6032.t1 | cds | g6032.t1.CDS1 | 13684916 | 13685054 |
| chr_2 | g6032 | g6032.t1 | exon | g6032.t1.exon2 | 13685388 | 13685526 |
| chr_2 | g6032 | g6032.t1 | cds | g6032.t1.CDS2 | 13685388 | 13685526 |
| chr_2 | g6032 | g6032.t1 | exon | g6032.t1.exon3 | 13686418 | 13686550 |
| chr_2 | g6032 | g6032.t1 | cds | g6032.t1.CDS3 | 13686418 | 13686550 |
| chr_2 | g6032 | g6032.t1 | exon | g6032.t1.exon4 | 13686618 | 13686707 |
| chr_2 | g6032 | g6032.t1 | cds | g6032.t1.CDS4 | 13686618 | 13686707 |
| chr_2 | g6032 | g6032.t1 | exon | g6032.t1.exon5 | 13686782 | 13686879 |
| chr_2 | g6032 | g6032.t1 | cds | g6032.t1.CDS5 | 13686782 | 13686879 |
| chr_2 | g6032 | g6032.t1 | exon | g6032.t1.exon6 | 13687312 | 13687422 |
| chr_2 | g6032 | g6032.t1 | cds | g6032.t1.CDS6 | 13687312 | 13687422 |
| chr_2 | g6032 | g6032.t1 | exon | g6032.t1.exon7 | 13687505 | 13687700 |
| chr_2 | g6032 | g6032.t1 | cds | g6032.t1.CDS7 | 13687505 | 13687700 |
| chr_2 | g6032 | g6032.t1 | exon | g6032.t1.exon8 | 13687767 | 13687830 |
| chr_2 | g6032 | g6032.t1 | cds | g6032.t1.CDS8 | 13687767 | 13687830 |
| chr_2 | g6032 | g6032.t1 | exon | g6032.t1.exon9 | 13688318 | 13688448 |
| chr_2 | g6032 | g6032.t1 | cds | g6032.t1.CDS9 | 13688318 | 13688448 |
| chr_2 | g6032 | g6032.t1 | exon | g6032.t1.exon10 | 13688549 | 13689110 |
| chr_2 | g6032 | g6032.t1 | cds | g6032.t1.CDS10 | 13688549 | 13689110 |
| chr_2 | g6032 | g6032.t1 | exon | g6032.t1.exon11 | 13689751 | 13690256 |
| chr_2 | g6032 | g6032.t1 | cds | g6032.t1.CDS11 | 13689751 | 13690256 |
| chr_2 | g6032 | g6032.t1 | exon | g6032.t1.exon12 | 13690819 | 13691142 |
| chr_2 | g6032 | g6032.t1 | cds | g6032.t1.CDS12 | 13690819 | 13691142 |
| chr_2 | g6032 | g6032.t1 | TSS | g6032.t1 | NA | NA |
| chr_2 | g6032 | g6032.t1 | TTS | g6032.t1 | NA | NA |
Sequences
>g6032.t1 Gene=g6032 Length=2493
ATGCTCGCATCACAACGTATTGAATCTGTGATAGATTTTAGTAATGACGATAATAAAAAT
TTGAACAAATCAGAAGAGTTGACAAAGAGAGGAGCAGCACCAACATTTATCGAATGGATG
ATATTGTCATGGGTGAGCGGTTTGATATGGAGTGAGGTGAAACAGTTATGGGATGTAGGA
TTGAAAGAATATGTTCATGACATGTGGAATGTGATAGATTTTATAACAAACTCATTGTAT
GTCGCTACAGTGGCACTTCGTGTGTCTCATACTATCAAAATGCATCAGAATCAATTGTCA
ATATTTTCATATTGTTCTTTGTATTTGCAGGTGCAAAAAGAGCTTGAATTGTATCCTCAA
GCGGAACAAATGCCTCGTGAGAAATGGGATGCTATCGATCCATTGTTGATTTCTGAAGGA
TTATTCAGTGCCGGAAATATTTTTAGTTCCTTAAAGCTTGTCTATATTTTTTCAGTAAAT
CCTCATCTTGGGCCACTTCAAGTTTCACTATCGAGAATGGTTACGGATATCATAAAATTC
TTTTTCTTATATGTTCTCGTTTTGTTTGCCTTCAGTAGTGGCTTAAATCAATTATTATGG
TATTATGCTGATTTGGAGAAAAAACGCTGTATAGATATATCATCACCCATCAACATCAAT
GCTACGAATATAGACACGAATGCATGCATAGTATGGAGAAGATTTGCAAATCTTTTCGAG
ACAACACAGACACTCTTTTGGGCTGCATTTGGTCTCATTGATCTCGATAGCTTTGAACTT
GATGGTATCAAAATATTCACACGATTTTGGGGCATGCTGATGTTTGGCTGCTACAGTGTC
ATCAATATCGTTGTGTTGCTCAATTTACTTATCGCCATGATGAATCACTCATATCAATTG
ATATCGGAACGTGCCGATACTGAATGGAAATTTGCTCGCTCAAAATTATGGATCAGTTAC
TTTGAAGAAGGAGCAACTTGCCCTCCACCTTTCAACATCATTCCAACGCCAAAATCATTG
ATGTATTTCCTACAATGGTTGAGGAGGAAATTTTTCGGGCAATCGAAAGCTATAAAAAAG
GAGCACATGAAGACAATAAGGAAAGTGAAACAAGCCAGCGAAAGAGATTTCCGTTATCAA
AGTATAATGAGAAATTTAGTTCGTCGCTATGTTACAGTACAGCAGCGTAAAGCAGAATCT
CAAGGCGTTACAGAAGACGATGTTAATGAGATTAAACAAGATATTTCAGCCTTTCGTTGT
GAACTCGTGGAGATACTTAAAAATAGCGGCATGAATACGAGTACGGCAGCTGGTGGTGCA
GGTGGAGCAGGTGGCAAGAAAAATCGACAAAAGGAGCGGCGATTAATGAAAGGTTTCAAT
GTCGCACCATCAATTGGATCAACTTCATTAACGCCATTAAGTGAACATAGCGGTAGCTTT
CCCTTAGATCATCATGGTTCTCATGAATTTTCTGCCCTTAGTGGGCTTTTTGGTCCGGGT
ATTACTCCTAGAAAAAATCCTGCTCCTAATCCTTTAGCTCAACAACAACAACAAAATTTG
TCAACATCACAAAGTTCCTTTGGTGACTCAATGCACAAACTTAGTCGTTTTGCACCTAAA
TTTCATTCAAAACGAAATAGTGGATCTCATAAGAGAAAATGGGGCACATTGATAGAGGCC
GCCAAATCAGGTAGTGTATCACGTTTTATCGGTCGTTCAAGATCAGAAGATTCAGTATGC
AATTCACCGCCGCCAAATCTCAATCGTAATGAGTCAGCGAGCAATAGCCCCAATTCAGAC
GAAGCGGTAACTGAATCACCGACGGATTCCAACCCTAGTTTAGACAAGCCCGATGATCAT
CATCATCATCACCACCATCATCATCATCATACTAAACACCAATCTTCTGGTGATCAGCAC
TCAAATACTACTACTTCTAACAATGATACCAATAGTAATGTGCATAATAGTTCCCATAGT
AATAATAATAAGAAAGACCACCATCATCATCTGCATATGCCGCATGTGAATCTCAATTTC
AGTGCACTAGCTGCACTCAAACGTAAACGAAAAAAATTCTCAAATAGTCGGAATGAAAGT
CCCGTGCTAGAACCACCTCCCGAGCATCCATCACCATCATCATCTAGTCTTAAAAAGTCT
ATTAAAAAAACATTACAAAGAGCATCTAGCGTTCCGACTCGTTCAAATGTACCTGATAAG
CGAGATAACATGCCACCACGTCATGAGCAGACGCAGAGTCAAGATCAGACCACTGAAGGT
TCACAAGAACAACCGGAACCACAACCTATTAGTGCCTCGACAACTGAAGAAAGTGTTGCA
CCAACAAGCACTGAACCGCTGCTTAATTTAACACGTGGAAATATGACAATTGCCAGTAAT
ATCAAATTTGAATTAAATGGACAACAAGCACTTCCAAATTTGCCCAATATCATTCCATTA
CAAGGACATCTTCATCAACAGGGCTGGTTATAG
>g6032.t1 Gene=g6032 Length=830
MLASQRIESVIDFSNDDNKNLNKSEELTKRGAAPTFIEWMILSWVSGLIWSEVKQLWDVG
LKEYVHDMWNVIDFITNSLYVATVALRVSHTIKMHQNQLSIFSYCSLYLQVQKELELYPQ
AEQMPREKWDAIDPLLISEGLFSAGNIFSSLKLVYIFSVNPHLGPLQVSLSRMVTDIIKF
FFLYVLVLFAFSSGLNQLLWYYADLEKKRCIDISSPININATNIDTNACIVWRRFANLFE
TTQTLFWAAFGLIDLDSFELDGIKIFTRFWGMLMFGCYSVINIVVLLNLLIAMMNHSYQL
ISERADTEWKFARSKLWISYFEEGATCPPPFNIIPTPKSLMYFLQWLRRKFFGQSKAIKK
EHMKTIRKVKQASERDFRYQSIMRNLVRRYVTVQQRKAESQGVTEDDVNEIKQDISAFRC
ELVEILKNSGMNTSTAAGGAGGAGGKKNRQKERRLMKGFNVAPSIGSTSLTPLSEHSGSF
PLDHHGSHEFSALSGLFGPGITPRKNPAPNPLAQQQQQNLSTSQSSFGDSMHKLSRFAPK
FHSKRNSGSHKRKWGTLIEAAKSGSVSRFIGRSRSEDSVCNSPPPNLNRNESASNSPNSD
EAVTESPTDSNPSLDKPDDHHHHHHHHHHHTKHQSSGDQHSNTTTSNNDTNSNVHNSSHS
NNNKKDHHHHLHMPHVNLNFSALAALKRKRKKFSNSRNESPVLEPPPEHPSPSSSSLKKS
IKKTLQRASSVPTRSNVPDKRDNMPPRHEQTQSQDQTTEGSQEQPEPQPISASTTEESVA
PTSTEPLLNLTRGNMTIASNIKFELNGQQALPNLPNIIPLQGHLHQQGWL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g6032.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 529 | - |
| 11 | g6032.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 611 | - |
| 13 | g6032.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 669 | - |
| 12 | g6032.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 634 | - |
| 14 | g6032.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 637 | 659 | - |
| 16 | g6032.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 791 | - |
| 9 | g6032.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 737 | - |
| 15 | g6032.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 791 | - |
| 2 | g6032.t1 | PANTHER | PTHR10117 | TRANSIENT RECEPTOR POTENTIAL CHANNEL | 3 | 748 | 1.4E-167 |
| 3 | g6032.t1 | PANTHER | PTHR10117:SF51 | TRANSIENT RECEPTOR POTENTIAL PROTEIN | 3 | 748 | 1.4E-167 |
| 4 | g6032.t1 | PRINTS | PR01097 | Transient receptor potential family signature | 276 | 297 | 4.1E-21 |
| 5 | g6032.t1 | PRINTS | PR01097 | Transient receptor potential family signature | 298 | 311 | 4.1E-21 |
| 6 | g6032.t1 | PRINTS | PR01097 | Transient receptor potential family signature | 326 | 339 | 4.1E-21 |
| 1 | g6032.t1 | Pfam | PF00520 | Ion transport protein | 29 | 305 | 5.4E-30 |
| 17 | g6032.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 30 | - |
| 24 | g6032.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 31 | 51 | - |
| 20 | g6032.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 52 | 70 | - |
| 23 | g6032.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 71 | 88 | - |
| 19 | g6032.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 89 | 134 | - |
| 27 | g6032.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 135 | 157 | - |
| 21 | g6032.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 158 | 176 | - |
| 25 | g6032.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 177 | 199 | - |
| 18 | g6032.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 200 | 268 | - |
| 26 | g6032.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 269 | 294 | - |
| 22 | g6032.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 295 | 830 | - |
| 8 | g6032.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 180 | 202 | - |
| 7 | g6032.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 269 | 291 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0070588 | calcium ion transmembrane transport | BP |
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0005216 | ion channel activity | MF |
| GO:0005262 | calcium channel activity | MF |
| GO:0006811 | ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed