General information for g6039.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP-binding cassette sub-family G member 1.
Parent gene
- The parent gene g6039 is located on chr_2: 13749137..13759878 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6039 | g6039.t1 | isoform | g6039.t1 | 13749137 | 13759878 |
| chr_2 | g6039 | g6039.t1 | exon | g6039.t1.exon1 | 13749137 | 13749264 |
| chr_2 | g6039 | g6039.t1 | cds | g6039.t1.CDS1 | 13749137 | 13749264 |
| chr_2 | g6039 | g6039.t1 | exon | g6039.t1.exon2 | 13753074 | 13753191 |
| chr_2 | g6039 | g6039.t1 | cds | g6039.t1.CDS2 | 13753074 | 13753191 |
| chr_2 | g6039 | g6039.t1 | exon | g6039.t1.exon3 | 13756734 | 13756880 |
| chr_2 | g6039 | g6039.t1 | cds | g6039.t1.CDS3 | 13756734 | 13756880 |
| chr_2 | g6039 | g6039.t1 | exon | g6039.t1.exon4 | 13756986 | 13757044 |
| chr_2 | g6039 | g6039.t1 | cds | g6039.t1.CDS4 | 13756986 | 13757044 |
| chr_2 | g6039 | g6039.t1 | exon | g6039.t1.exon5 | 13757291 | 13757615 |
| chr_2 | g6039 | g6039.t1 | cds | g6039.t1.CDS5 | 13757291 | 13757615 |
| chr_2 | g6039 | g6039.t1 | exon | g6039.t1.exon6 | 13757894 | 13758845 |
| chr_2 | g6039 | g6039.t1 | cds | g6039.t1.CDS6 | 13757894 | 13758845 |
| chr_2 | g6039 | g6039.t1 | exon | g6039.t1.exon7 | 13758943 | 13759043 |
| chr_2 | g6039 | g6039.t1 | cds | g6039.t1.CDS7 | 13758943 | 13759043 |
| chr_2 | g6039 | g6039.t1 | exon | g6039.t1.exon8 | 13759265 | 13759435 |
| chr_2 | g6039 | g6039.t1 | cds | g6039.t1.CDS8 | 13759265 | 13759435 |
| chr_2 | g6039 | g6039.t1 | exon | g6039.t1.exon9 | 13759491 | 13759608 |
| chr_2 | g6039 | g6039.t1 | cds | g6039.t1.CDS9 | 13759491 | 13759608 |
| chr_2 | g6039 | g6039.t1 | exon | g6039.t1.exon10 | 13759667 | 13759878 |
| chr_2 | g6039 | g6039.t1 | cds | g6039.t1.CDS10 | 13759667 | 13759878 |
| chr_2 | g6039 | g6039.t1 | TTS | g6039.t1 | 13760194 | 13760194 |
| chr_2 | g6039 | g6039.t1 | TSS | g6039.t1 | NA | NA |
Sequences
>g6039.t1 Gene=g6039 Length=2331
ATGGCGGAAGGAAAAGTTCATTTTCAAATGGAAGGCAATCAACTGCCACCATATTACTCG
TCCAACTCAAACAGCCTCAAATCACCACCGACAACGACCAATTTTAAAAACACAGTGGCT
GCTTTAGGTGGCTCACAGAATAATTTAAATATATGCAATGGATCAATAATCATGGGTGGT
AGCAGTGATAAACATGGATTAGTGCGGAAAATTCCAAATGAAATGAGCTGCCAGAAGAAA
CCTACGGTACAATTGACACATCTCCTTCAACGACCACCCGTCGATATTGAATTTCAAAAA
ATTTCTTATTCAGTATCAGAGGGTCGAGCGCGAGGCTATAAGACAATTTTGAAAGGAATA
AATGGAAAATTTCGATCCGGAGAGCTTGCGGCTATCATGGGCCCTTCCGGTGCTGGAAAG
AGCACTTTGATGAATATTCTTGCTGGATACAAAACGTCAAACCTGAGTGGTCACGTATTG
ATAAATGGCAAAGAGCGCAATTTGCGACGTTTTAGGAAATTAAGTTGTTATATCATGCAA
GATGATCAGCTGCTGCCGTATTTAACAGTTCGTGAAGCTATGCTCGTGAGTGCAAATTTA
AAACTTGGCAAAGATCTTACTGAAGGTGCTAAGAAAATCATCATTGATGAAATTATTGAT
GCATTGGGTTTATCAGAATGTGCAGCAACAAAGACAATAAGTTTATCGGGCGGCCAACGA
AAACGTCTGTCAGTTGCACTCGAACTTGTGAATAATCCTCCCGTAATGTTCCTTGATGAA
CCAACAAGTGGTCTTGACAGTTCATCATGCTTTCAACTCATTTCACTTCTTAAATCACTT
GCACGTGGTGGTCGAACAATTGTCTGCACCATTCATCAACCCTCGGCACGTCTTTTCGAG
ATGTTTGATAATCTATATATGCTTGCTGAGGGTCAATGCATCTATCAAGGAGTCGTGAAC
GGTCTTGTTCCATTTCTAGCATCGAATGGTTATATTTGCCCAAGCTACCACAATCCGGCA
GATTATGTAATGGAAATTGCATGCGGTGAACATGGTGAAGCTGTCTACAAGCTCGTCACA
GCCATGAACAATCGTAAAAGCATCAACAACTTTGGTCAAGATGCGCTTTTGTCAGTTGAA
AAACCACTCAATCTTTCGACTATTGCCATTCCCTCTTCATCGACATCCGCATCCGCATCG
ACAACTACAACAACAATAAGCAATGATACTGCGGCGAATGGTAATGGGCCACTTGCAGCA
CATATTGTCGCACATGACAGTGTCGTGGTAGATGTTGATTTGGTTAAAAATAGTAGTGGA
CGAGCAGAATATACGATTATAAATATGAATCAATCAAAAATTGAACAAAATGGCAACAAT
TCACAACAACAGCAACAAATCGGACCAACAACTTCACTTTTAGATTCATCAACCGAAAGT
GTCATTGTGATGGGCAAAAAAGATACACATAAAAATCACATCAACGGATTTCCTACAAGT
AGTTGGACGCAATTTTGGATTCTTCTCAAACGAACATTCCTCACAATCATACGAGATCAA
ACATTGACACAAATGCGACTCGTTTCACACATCGTTGTAGGCGCAATAATTGGAATGATT
TATTATGGAATTGGTAATGATGCGAGTAAAATTATGAGCAACACCGGCTGCTTATTTTTC
ACGACATTATTCACAATGTTTACCGCAATGATGCCTACAATTTTGACATTTCCCTCTGAA
ATGTCTGTATTTATACGAGAACATCTTAATTATTGGTACTCGCTGAAGTCATATTATTTT
GCCAAAACGATAGCTGATTTGCCTTTTCAGGTTCTTTTTACAAGCGTCTATGTGCTTGTA
GTATACTTGCTAACAAATCAACCGATGGAGGCAGATCGCATTGCGATGTTTGTGTTAATT
TGCATTCTCACTTCGCTTGTAGCGCAAAGTTTGGGACTTTTAATAGGCGCTGGAATGAGT
GTTGAAACTGGAACGTTCCTTGGTCCAGTAACAACAATTCCAACGATATTATTTTCTGGC
TTCTTTGTCAATTTCAATGTCATTCCAAATTATCTTAAATGGGTCACATATGTCAGTTAT
GTAAGATTTGGATTTGAAGGTGCTATGATATCCGTTTATGGACTTGGTCGTGAGAAACTC
GAATGCGATGAAATCTACTGTCATTATCGTGACCCTAAAAAGTTTCTTGCGGAAATGTCA
ATGGCTGATGCTAATTTTTGGGTTGATGCTGCCGCTTTAGCTGGAATTTTTGTTGGACTG
AGAATTATTGCATATTTTGTACTTCGATGGAAACTTCATTCAATACGTTAA
>g6039.t1 Gene=g6039 Length=776
MAEGKVHFQMEGNQLPPYYSSNSNSLKSPPTTTNFKNTVAALGGSQNNLNICNGSIIMGG
SSDKHGLVRKIPNEMSCQKKPTVQLTHLLQRPPVDIEFQKISYSVSEGRARGYKTILKGI
NGKFRSGELAAIMGPSGAGKSTLMNILAGYKTSNLSGHVLINGKERNLRRFRKLSCYIMQ
DDQLLPYLTVREAMLVSANLKLGKDLTEGAKKIIIDEIIDALGLSECAATKTISLSGGQR
KRLSVALELVNNPPVMFLDEPTSGLDSSSCFQLISLLKSLARGGRTIVCTIHQPSARLFE
MFDNLYMLAEGQCIYQGVVNGLVPFLASNGYICPSYHNPADYVMEIACGEHGEAVYKLVT
AMNNRKSINNFGQDALLSVEKPLNLSTIAIPSSSTSASASTTTTTISNDTAANGNGPLAA
HIVAHDSVVVDVDLVKNSSGRAEYTIINMNQSKIEQNGNNSQQQQQIGPTTSLLDSSTES
VIVMGKKDTHKNHINGFPTSSWTQFWILLKRTFLTIIRDQTLTQMRLVSHIVVGAIIGMI
YYGIGNDASKIMSNTGCLFFTTLFTMFTAMMPTILTFPSEMSVFIREHLNYWYSLKSYYF
AKTIADLPFQVLFTSVYVLVVYLLTNQPMEADRIAMFVLICILTSLVAQSLGLLIGAGMS
VETGTFLGPVTTIPTILFSGFFVNFNVIPNYLKWVTYVSYVRFGFEGAMISVYGLGREKL
ECDEIYCHYRDPKKFLAEMSMADANFWVDAAALAGIFVGLRIIAYFVLRWKLHSIR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 23 | g6039.t1 | CDD | cd03213 | ABCG_EPDR | 93 | 317 | 1.24839E-93 |
| 7 | g6039.t1 | Gene3D | G3DSA:3.40.50.300 | - | 107 | 325 | 3.2E-57 |
| 4 | g6039.t1 | PANTHER | PTHR48041:SF78 | ABC TRANSPORTER EXPRESSED IN TRACHEA, ISOFORM A-RELATED | 84 | 771 | 8.0E-278 |
| 5 | g6039.t1 | PANTHER | PTHR48041 | ABC TRANSPORTER G FAMILY MEMBER 28 | 84 | 771 | 8.0E-278 |
| 3 | g6039.t1 | Pfam | PF00005 | ABC transporter | 117 | 263 | 1.1E-27 |
| 1 | g6039.t1 | Pfam | PF19055 | ABC-2 type transporter | 292 | 350 | 3.1E-8 |
| 2 | g6039.t1 | Pfam | PF01061 | ABC-2 type transporter | 503 | 711 | 6.0E-45 |
| 15 | g6039.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 526 | - |
| 19 | g6039.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 527 | 544 | - |
| 11 | g6039.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 545 | 555 | - |
| 18 | g6039.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 556 | 578 | - |
| 12 | g6039.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 579 | 597 | - |
| 22 | g6039.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 598 | 624 | - |
| 10 | g6039.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 625 | 635 | - |
| 21 | g6039.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 636 | 660 | - |
| 14 | g6039.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 661 | 665 | - |
| 17 | g6039.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 666 | 685 | - |
| 9 | g6039.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 686 | 696 | - |
| 16 | g6039.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 697 | 716 | - |
| 13 | g6039.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 717 | 745 | - |
| 20 | g6039.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 746 | 768 | - |
| 8 | g6039.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 769 | 776 | - |
| 31 | g6039.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 235 | 249 | - |
| 33 | g6039.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 96 | 335 | 20.095 |
| 32 | g6039.t1 | SMART | SM00382 | AAA_5 | 126 | 311 | 3.9E-11 |
| 6 | g6039.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 89 | 317 | 1.95E-48 |
| 24 | g6039.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 522 | 544 | - |
| 26 | g6039.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 556 | 578 | - |
| 27 | g6039.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 604 | 626 | - |
| 25 | g6039.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 633 | 655 | - |
| 30 | g6039.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 665 | 687 | - |
| 29 | g6039.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 694 | 716 | - |
| 28 | g6039.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 746 | 768 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005524 | ATP binding | MF |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05679 (ATP-binding cassette, subfamily G (WHITE), member 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
