General information for g6049.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g6049 is located on chr_2: 13861246..13863403 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6049 | g6049.t1 | TSS | g6049.t1 | 13861207 | 13861207 |
| chr_2 | g6049 | g6049.t1 | isoform | g6049.t1 | 13861246 | 13863084 |
| chr_2 | g6049 | g6049.t1 | exon | g6049.t1.exon1 | 13861246 | 13861434 |
| chr_2 | g6049 | g6049.t1 | cds | g6049.t1.CDS1 | 13861246 | 13861434 |
| chr_2 | g6049 | g6049.t1 | exon | g6049.t1.exon2 | 13861596 | 13862302 |
| chr_2 | g6049 | g6049.t1 | cds | g6049.t1.CDS2 | 13861596 | 13862302 |
| chr_2 | g6049 | g6049.t1 | exon | g6049.t1.exon3 | 13862453 | 13862692 |
| chr_2 | g6049 | g6049.t1 | cds | g6049.t1.CDS3 | 13862453 | 13862692 |
| chr_2 | g6049 | g6049.t1 | exon | g6049.t1.exon4 | 13862749 | 13862880 |
| chr_2 | g6049 | g6049.t1 | cds | g6049.t1.CDS4 | 13862749 | 13862880 |
| chr_2 | g6049 | g6049.t1 | exon | g6049.t1.exon5 | 13862955 | 13863084 |
| chr_2 | g6049 | g6049.t1 | cds | g6049.t1.CDS5 | 13862955 | 13863084 |
| chr_2 | g6049 | g6049.t1 | TTS | g6049.t1 | NA | NA |
Sequences
>g6049.t1 Gene=g6049 Length=1398
ATGAAATCAGTGCAAGAATTTTATAAAGACAAAACAATCTTCATAACAGGTGGTTCGGGA
TTTATGGGAAAAGTTCTGATTGAAAAACTGCTCTATTCATGTTCTGATTTAAAGCAAATT
ATTCTCTTAATTCGTTCTAAAAATGGTAAAGACGAAATAACAAGAGTTAAAGAGTTTCAA
AAACATTCCCTTTTTGAAAGAATTATGAAAGAGAAACCAAAAGTGATGGAAAAATTAAAA
GTTATTTCTGGTGAAATTTCTCAAACAAATATTGGAATGAGCGATGAAAATATGCAGTTT
GTTATTGACAACACAAACATCATTTTCCATGTTGCTGCTTCAATAAATTTAAAAGCTTCA
CTGAAACACAACACTTTGATAAATTTTATTGCAACAAAAAAAGTTCTTGAAATAGCAAAA
AAAATTAAAAATTTGACAATAATGGTTCATGTGTCAACTGCATTTTGTAATGCCGGATTT
AGTGAATGTAAAGAATTAGTTTATGACTCAACTTGTGATCCATTGGAAATAATAAAACTC
GTAAAATCGGAAGATGAAAATTCATTAGTAGCAATTGAAAAGAAATTATTGGAAAGATAT
CCAAACACTTATTTATTAACAAAAAGATTGGCAGAAAACTTAGTGAAAGAAGAATTTGAC
AAAAATTTGCCAGTTTGCATTCTTCGACCAAGTATTGTCGGACCAACACTCAAAGAACCG
TTTGTCGGTTGGGAAGATTCACCAAGTGCATTAACTGGTGTTCCATTAATGGTCTATACT
GAAGTACTACGATGCATGCGTGTTAATTTAGAAGCAAAATTTAATTTCATTCCAGTTGAT
GTAGCAATCAATGGCTTCATTATGGCTGCTAAATACCATGGCTGTGAGGCATCGAGAAAT
GAAAATGTGCCGGTTTACAATTTAACAATTGACGAGCAAGTTGTACCAAGCTACAAAGAA
TTTTTCACTGTGCTAAATTCACTTAAGCATGTCTATCCTTTTGCATCATCTTTATGGTAT
CCGAACATCATGACAACAACAAATAAAGTGAAATATTTGATAAATACTTTACTCTTTCAA
TGGTTTCCAGCAATTGTAATTGACATTTTGTTAACAATTGTTCGAAGAAAGCGATTAATG
ATTGAGACACAAAGCAAAATCACAAGTGGAATGAAAATTCTTGAGTATTTCACACTTAAC
AATTGGAGGTTAAAGTCCAACAAGTTTGACGATTTAATAAAAATCCAATCGCATGATGAT
TATAAAAGATTCTTCATCGATACGAAAAAGATTAATTTTGAAAAATACTTTGAAGACTCG
ATAATTACTGCGAGAATTCTTCATGGAAAAGATCCACTTTCAACTCTGTCTAGGGCAAAA
ATAGTTTTTAAAATGTGA
>g6049.t1 Gene=g6049 Length=465
MKSVQEFYKDKTIFITGGSGFMGKVLIEKLLYSCSDLKQIILLIRSKNGKDEITRVKEFQ
KHSLFERIMKEKPKVMEKLKVISGEISQTNIGMSDENMQFVIDNTNIIFHVAASINLKAS
LKHNTLINFIATKKVLEIAKKIKNLTIMVHVSTAFCNAGFSECKELVYDSTCDPLEIIKL
VKSEDENSLVAIEKKLLERYPNTYLLTKRLAENLVKEEFDKNLPVCILRPSIVGPTLKEP
FVGWEDSPSALTGVPLMVYTEVLRCMRVNLEAKFNFIPVDVAINGFIMAAKYHGCEASRN
ENVPVYNLTIDEQVVPSYKEFFTVLNSLKHVYPFASSLWYPNIMTTTNKVKYLINTLLFQ
WFPAIVIDILLTIVRRKRLMIETQSKITSGMKILEYFTLNNWRLKSNKFDDLIKIQSHDD
YKRFFIDTKKINFEKYFEDSIITARILHGKDPLSTLSRAKIVFKM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g6049.t1 | CDD | cd05236 | FAR-N_SDR_e | 11 | 309 | 2.41038E-96 |
| 12 | g6049.t1 | CDD | cd09071 | FAR_C | 358 | 445 | 4.91431E-20 |
| 7 | g6049.t1 | Gene3D | G3DSA:3.40.50.720 | - | 2 | 351 | 7.6E-59 |
| 3 | g6049.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 2 | 464 | 1.2E-137 |
| 4 | g6049.t1 | PANTHER | PTHR11011:SF12 | FATTY ACYL-COA REDUCTASE | 2 | 464 | 1.2E-137 |
| 1 | g6049.t1 | Pfam | PF07993 | Male sterility protein | 15 | 284 | 2.1E-65 |
| 2 | g6049.t1 | Pfam | PF03015 | Male sterility protein | 359 | 445 | 3.3E-18 |
| 9 | g6049.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 351 | - |
| 10 | g6049.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 352 | 374 | - |
| 8 | g6049.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 375 | 465 | - |
| 6 | g6049.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 4 | 294 | 2.94E-27 |
| 5 | g6049.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 352 | 374 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed