General information for g6049.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG8306.
Parent gene
- The parent gene g6049 is located on chr_2: 13861246..13863403 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6049 | g6049.t2 | TSS | g6049.t2 | 13861207 | 13861207 |
| chr_2 | g6049 | g6049.t2 | isoform | g6049.t2 | 13861246 | 13863403 |
| chr_2 | g6049 | g6049.t2 | exon | g6049.t2.exon1 | 13861246 | 13862302 |
| chr_2 | g6049 | g6049.t2 | cds | g6049.t2.CDS1 | 13861611 | 13862302 |
| chr_2 | g6049 | g6049.t2 | exon | g6049.t2.exon2 | 13862453 | 13862692 |
| chr_2 | g6049 | g6049.t2 | cds | g6049.t2.CDS2 | 13862453 | 13862692 |
| chr_2 | g6049 | g6049.t2 | exon | g6049.t2.exon3 | 13862749 | 13862880 |
| chr_2 | g6049 | g6049.t2 | cds | g6049.t2.CDS3 | 13862749 | 13862880 |
| chr_2 | g6049 | g6049.t2 | exon | g6049.t2.exon4 | 13862955 | 13863080 |
| chr_2 | g6049 | g6049.t2 | cds | g6049.t2.CDS4 | 13862955 | 13863080 |
| chr_2 | g6049 | g6049.t2 | exon | g6049.t2.exon5 | 13863281 | 13863403 |
| chr_2 | g6049 | g6049.t2 | cds | g6049.t2.CDS5 | 13863281 | 13863380 |
| chr_2 | g6049 | g6049.t2 | TTS | g6049.t2 | NA | NA |
Sequences
>g6049.t2 Gene=g6049 Length=1678
ATGAAATCAGTGCAAGAATTTTATAAAGACAAAACAATCTTCATAACAGGTGGTTCGGGA
TTTATGGGAAAAGTTCTGATTGAAAAACTGCTCTATTCATGTTCTGATTTAAAGCAAATT
ATTCTCTTAATTCGTTCTAAAAATGGTAAAGACGAAATAACAAGAGTTAAAGAGTTTCAA
AAACATTCCGTAAGTAAAATAAACACGTTACTGCAAGTGTTTCATAAGAAATTAAATTTA
ACCTTTGATTCTTCAATTTCTTATTATTCAATCAACTTCATTTTGTTGATCTTTGCAACT
TTAAACATCTTATAAATAGATTGCAATCAACGATTTATCTTTTTTTACAGCTTTTTGAAA
GAATTATGAAAGAGAAACCAAAAGTGATGGAAAAATTAAAAGTTATTTCTGGTGAAATTT
CTCAAACAAATATTGGAATGAGCGATGAAAATATGCAGTTTGTTATTGACAACACAAACA
TCATTTTCCATGTTGCTGCTTCAATAAATTTAAAAGCTTCACTGAAACACAACACTTTGA
TAAATTTTATTGCAACAAAAAAAGTTCTTGAAATAGCAAAAAAAATTAAAAATTTGACAA
TAATGGTTCATGTGTCAACTGCATTTTGTAATGCCGGATTTAGTGAATGTAAAGAATTAG
TTTATGACTCAACTTGTGATCCATTGGAAATAATAAAACTCGTAAAATCGGAAGATGAAA
ATTCATTAGTAGCAATTGAAAAGAAATTATTGGAAAGATATCCAAACACTTATTTATTAA
CAAAAAGATTGGCAGAAAACTTAGTGAAAGAAGAATTTGACAAAAATTTGCCAGTTTGCA
TTCTTCGACCAAGTATTGTCGGACCAACACTCAAAGAACCGTTTGTCGGTTGGGAAGATT
CACCAAGTGCATTAACTGGTGTTCCATTAATGGTCTATACTGAAGTACTACGATGCATGC
GTGTTAATTTAGAAGCAAAATTTAATTTCATTCCAGTTGATGTAGCAATCAATGGCTTCA
TTATGGCTGCTAAATACCATGGCTGTGAGGCATCGAGAAATGAAAATGTGCCGGTTTACA
ATTTAACAATTGACGAGCAAGTTGTACCAAGCTACAAAGAATTTTTCACTGTGCTAAATT
CACTTAAGCATGTCTATCCTTTTGCATCATCTTTATGGTATCCGAACATCATGACAACAA
CAAATAAAGTGAAATATTTGATAAATACTTTACTCTTTCAATGGTTTCCAGCAATTGTAA
TTGACATTTTGTTAACAATTGTTCGAAGAAAGCGATTAATGATTGAGACACAAAGCAAAA
TCACAAGTGGAATGAAAATTCTTGAGTATTTCACACTTAACAATTGGAGGTTAAAGTCCA
ACAAGTTTGACGATTTAATAAAAATCCAATCGCATGATGATTATAAAAGATTCTTCATCG
ATACGAAAAAGATTAATTTTGAAAAATACTTTGAAGACTCGATAATTACTGCGAGAATTC
TTCATGGAAAAGATCCACTTTCAACTCTGTCTAGGGCAAAAATAGTTTTTAAAATACTGT
ACACTGCTGATTTGGTGATTAAATATTTTATCATGTATTGGATTTTTAGTTATTTGATTA
ATGTAATGAAATTGCCATTAAAATTTAATAAATAAAATGAAAAATTTTGTAATTCAAA
>g6049.t2 Gene=g6049 Length=429
MKEKPKVMEKLKVISGEISQTNIGMSDENMQFVIDNTNIIFHVAASINLKASLKHNTLIN
FIATKKVLEIAKKIKNLTIMVHVSTAFCNAGFSECKELVYDSTCDPLEIIKLVKSEDENS
LVAIEKKLLERYPNTYLLTKRLAENLVKEEFDKNLPVCILRPSIVGPTLKEPFVGWEDSP
SALTGVPLMVYTEVLRCMRVNLEAKFNFIPVDVAINGFIMAAKYHGCEASRNENVPVYNL
TIDEQVVPSYKEFFTVLNSLKHVYPFASSLWYPNIMTTTNKVKYLINTLLFQWFPAIVID
ILLTIVRRKRLMIETQSKITSGMKILEYFTLNNWRLKSNKFDDLIKIQSHDDYKRFFIDT
KKINFEKYFEDSIITARILHGKDPLSTLSRAKIVFKILYTADLVIKYFIMYWIFSYLINV
MKLPLKFNK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g6049.t2 | CDD | cd09071 | FAR_C | 290 | 377 | 1.05894E-19 |
| 8 | g6049.t2 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 283 | 1.6E-37 |
| 3 | g6049.t2 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 2 | 418 | 5.8E-108 |
| 4 | g6049.t2 | PANTHER | PTHR11011:SF12 | FATTY ACYL-COA REDUCTASE | 2 | 418 | 5.8E-108 |
| 1 | g6049.t2 | Pfam | PF07993 | Male sterility protein | 6 | 216 | 7.1E-46 |
| 2 | g6049.t2 | Pfam | PF03015 | Male sterility protein | 291 | 377 | 2.6E-18 |
| 11 | g6049.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 283 | - |
| 13 | g6049.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 284 | 306 | - |
| 9 | g6049.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 307 | 396 | - |
| 12 | g6049.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 397 | 418 | - |
| 10 | g6049.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 419 | 429 | - |
| 7 | g6049.t2 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 9 | 226 | 2.19E-14 |
| 6 | g6049.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 284 | 306 | - |
| 5 | g6049.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 398 | 420 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed