General information for g6050.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Fatty acyl-CoA reductase 1.
Parent gene
- The parent gene g6050 is located on chr_2: 13867542..13868057 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6050 | g6050.t7 | isoform | g6050.t7 | 13866364 | 13867256 |
| chr_2 | g6050 | g6050.t7 | exon | g6050.t7.exon1 | 13866364 | 13866770 |
| chr_2 | g6050 | g6050.t7 | cds | g6050.t7.CDS1 | 13866377 | 13866770 |
| chr_2 | g6050 | g6050.t7 | exon | g6050.t7.exon2 | 13866882 | 13867256 |
| chr_2 | g6050 | g6050.t7 | cds | g6050.t7.CDS2 | 13866882 | 13867171 |
| chr_2 | g6050 | g6050.t7 | TTS | g6050.t7 | 13868160 | 13868160 |
| chr_2 | g6050 | g6050.t7 | TSS | g6050.t7 | NA | NA |
Sequences
>g6050.t7 Gene=g6050 Length=782
GTTCAAACGAATAATGGAAGAAAAGCCGGAAGTGATGAAGAAAATATTAGTAGTTTCTGG
TGAAATTACTGAAAAGAATTTGGGATTAAGTGAAGAAAATCTTCAATATGTGATTGATAA
TACGGATATAGTTTTCCATGTAGCAGCATCAATTCGATTTACAGCTCCACTTAAAGAAAA
TGTTCTTACAAATTTGGTTGCAACACAGGAAACTATTGATATTGCAAAAAAGATGAAAAA
TTTGAAAGCAATGTTGCATGTTTCAACTGCATTTTGCACAGTAGAAAGATCAGTAATTGA
TGAGAAAGTTTACGACCATCCAGGAAATCCATTTAATTTAATTTCATTAGCAAAACAAAT
GGATGAACCAACAATGTCAGGACTTGAAGATCAATTGGTTCCACCTCCTTACACAAAAAG
ATTAGCAGAACTTCTCGTTCAAGATGAATACAAAAATTCTAATCTACCAATTTGTATTGT
AAGACCCAGCATTGTAGGACCAGCGCTAAAAGAACCTATGCCTGGATGGGTTGATTCACT
TGGTGCAATTAGTGGAATAATTTTTGGTGTTGCTAAAGGAGTCATTCGATGTATGCTAAT
TGATCCTGAGAGTAATTTTGAGTACATTCCAGTCGATCAATCAATCAATGGATTTATTAT
GGTAGCAAAACAAATTGGAACACAAAACAAAAGGTAATAAAAATAGTAAACAAGTCATAA
ACTTTAAAATGGAATTTTTTTTCTCTTTTAGATCTGAAGAAATTCCCGTTTATAATATGA
CA
>g6050.t7 Gene=g6050 Length=227
MEEKPEVMKKILVVSGEITEKNLGLSEENLQYVIDNTDIVFHVAASIRFTAPLKENVLTN
LVATQETIDIAKKMKNLKAMLHVSTAFCTVERSVIDEKVYDHPGNPFNLISLAKQMDEPT
MSGLEDQLVPPPYTKRLAELLVQDEYKNSNLPICIVRPSIVGPALKEPMPGWVDSLGAIS
GIIFGVAKGVIRCMLIDPESNFEYIPVDQSINGFIMVAKQIGTQNKR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6050.t7 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 227 | 0 |
| 2 | g6050.t7 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 2 | 226 | 0 |
| 3 | g6050.t7 | PANTHER | PTHR11011:SF12 | FATTY ACYL-COA REDUCTASE | 2 | 226 | 0 |
| 1 | g6050.t7 | Pfam | PF07993 | Male sterility protein | 6 | 212 | 0 |
| 4 | g6050.t7 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 11 | 220 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed