Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6056 g6056.t6 TSS g6056.t6 13925251 13925251
chr_2 g6056 g6056.t6 isoform g6056.t6 13925759 13926384
chr_2 g6056 g6056.t6 exon g6056.t6.exon1 13925759 13926273
chr_2 g6056 g6056.t6 cds g6056.t6.CDS1 13925759 13926151
chr_2 g6056 g6056.t6 exon g6056.t6.exon2 13926335 13926384
chr_2 g6056 g6056.t6 TTS g6056.t6 NA NA

Sequences

>g6056.t6 Gene=g6056 Length=565
ATGATGGATGAAAATTCGCTAAATGGTGCTCAAAATGTCGGTGTGGGCCAAAGTCGTGTT
AATAATGCCGTGACTGGTGATAAAATTGCGGATGATGCTAGCAATGGCAATGCTCAAACC
GTACCTCAATATACGATTCCCGGAATTTTGCATTTCATCGAGCACGAATGGCAGCGATTT
CAAGCAGAAAGATCACAATGGGACACTGATCGTGCTGAATTACAGGTGAGCAAAACAAAA
AGAAAAAAGTGCACTCCTTATTCACCCTCTTTCATTCGCAATCAGTGTGTGTCTGTAAAA
AATTTCATGATCAAAGGCCGTAAACGAAAAATTTCCAAAAAAAAATCAACAGTGACGTCG
TCTTTCTTTACGAATTGTAATTTGCCAAAGTGATAATTGTATTTTCACATCGTCAATTGA
AACTAATTGCATTATTTTCTCGTTCTTGCCATCCATAGAGCAGAAAACTCCTCTTTTTTC
TCATCTAATTATCAATTTTTCTTGCACGTCACTGCACTCGTTCACTCATTCGCCTGTTCG
CTACATCTTCATCTTCCTCATCCCA

>g6056.t6 Gene=g6056 Length=130
MMDENSLNGAQNVGVGQSRVNNAVTGDKIADDASNGNAQTVPQYTIPGILHFIEHEWQRF
QAERSQWDTDRAELQVSKTKRKKCTPYSPSFIRNQCVSVKNFMIKGRKRKISKKKSTVTS
SFFTNCNLPK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g6056.t6 Pfam PF08232 Striatin family 45 75 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed