Gene loci information

Transcript annotation

  • This transcript has been annotated as N-acetylglucosamine-6-phosphate deacetylase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6058 g6058.t3 TTS g6058.t3 13952087 13952087
chr_2 g6058 g6058.t3 isoform g6058.t3 13952234 13953342
chr_2 g6058 g6058.t3 exon g6058.t3.exon1 13952234 13952782
chr_2 g6058 g6058.t3 cds g6058.t3.CDS1 13952234 13952782
chr_2 g6058 g6058.t3 exon g6058.t3.exon2 13952886 13953342
chr_2 g6058 g6058.t3 cds g6058.t3.CDS2 13952886 13952966
chr_2 g6058 g6058.t3 TSS g6058.t3 13954148 13954148

Sequences

>g6058.t3 Gene=g6058 Length=1006
TGTTGAATCGGGTGTGGCAAAGGTGTCAAAGGGTCTATTAGCTCATGGCGTTACAAGTTT
TTGTCCTACTCTTGTAACATCACCCATTGAGACATATCATCAAGTATTACCGAAGATTAA
GAGAAAAGCAGGCGGTAAACATGGCGCGACAATACTTGGAGTTCATGTAGAGGGACCATT
TATATCAATCGAGAAGAAAGGCGCTCATCCAGAGAATTGTATTCGTACATTCGAAAATGG
CTTCGAGACATTTGAAAATGTTTATGGAGACATTGAAAATATTAGTATTGTAACATTGGC
GCCAGAAAAACCGAGAGTTCCAGAAGTAATTACAGAACTCGCACGACGAGGTATTGTTGT
ATCAGTTGGCCATTCAATGGCTGACTTGATGCATGGTGAGACTGCTGTTAAACATGGAGC
TACTTTGATAACACATCTTTTTAATGCCATGATGCCATTTCATCATCGTGATCCTGGTTT
AGTTGGTCTATTAGCATCAAATGAAATTCCAGAAGGTAAAACAGTATATTTTGGCATAAT
AACTGATGGAATTCATACACATAATGCTGCATTAAGAATTGCATATCGTACACATCCAAG
TGGTTTAATAATTGTAACTGATGCAATATCTGCAATGGGATTAGAAGAAGGAACACATCG
AATTGGACAATATACAATTGAAGTGAGAGATCATAAAGCTTTTATAGCAGGCACAAATAC
TCTTTGTGGTTCAATTGCACCAATGGATGAATGTGTTAGAATTTTCAAAGCTGCAACAAA
TTGTCCACTTGAATTTGCACTTGAAGCGGCATCATTACATCCTGCCAAGTGCTTAGAAAT
CTCAGATCGTAAAGGAACTCTTAATTATGGTGCTGATGCTGATTTTATTTTGATGGATGA
TAATTTGGTCATTCATTCAACATGGATTGCTGGCGAATGTGTATTTGAATCTGAAAGCCA
TGCGCTGCCACCTGTAGTTAGCCAATGGTTCGAGGATGATGATTAA

>g6058.t3 Gene=g6058 Length=209
MADLMHGETAVKHGATLITHLFNAMMPFHHRDPGLVGLLASNEIPEGKTVYFGIITDGIH
THNAALRIAYRTHPSGLIIVTDAISAMGLEEGTHRIGQYTIEVRDHKAFIAGTNTLCGSI
APMDECVRIFKAATNCPLEFALEAASLHPAKCLEISDRKGTLNYGADADFILMDDNLVIH
STWIAGECVFESESHALPPVVSQWFEDDD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g6058.t3 Gene3D G3DSA:3.20.20.140 - 1 160 0.00e+00
2 g6058.t3 PANTHER PTHR11113 N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE 2 193 0.00e+00
3 g6058.t3 PANTHER PTHR11113:SF14 N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE 2 193 0.00e+00
1 g6058.t3 Pfam PF01979 Amidohydrolase family 32 188 0.00e+00
4 g6058.t3 SUPERFAMILY SSF51556 Metallo-dependent hydrolases 8 160 0.00e+00
5 g6058.t3 SUPERFAMILY SSF51338 Composite domain of metallo-dependent hydrolases 160 193 1.02e-05

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF
GO:0008448 N-acetylglucosamine-6-phosphate deacetylase activity MF
GO:0006044 N-acetylglucosamine metabolic process BP
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values