General information for g6064.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Serine/threonine-protein phosphatase 2A activator.
Parent gene
- The parent gene g6064 is located on chr_2: 13972155..13972894 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6064 | g6064.t4 | TSS | g6064.t4 | 13971709 | 13971709 |
| chr_2 | g6064 | g6064.t4 | isoform | g6064.t4 | 13972155 | 13972894 |
| chr_2 | g6064 | g6064.t4 | exon | g6064.t4.exon1 | 13972155 | 13972894 |
| chr_2 | g6064 | g6064.t4 | cds | g6064.t4.CDS1 | 13972300 | 13972821 |
| chr_2 | g6064 | g6064.t4 | TTS | g6064.t4 | 13972862 | 13972862 |
Sequences
>g6064.t4 Gene=g6064 Length=740
TGTAGAATCACTTGTTAAAGATGTCTTGCCTGATGATTCCAAAGAAGCCGTTAAAGAATT
GATTCCTTATATTTTAGATTCATTTGGAAATTCTACAAGAATTGATTATGGAACTGGACA
TGAACTTTCTTTCATCTTCTTTCTTATGGCACTTTTCAAAATTGGTGTTTTAGAGAAATC
AGATGAATTGGCAGTAGCTATCAAAGTCTTTGATTTATATTTGAATTTTGTACGAAAATT
ACAAGTAACTTATAGATTAGAACCAGCTGGATCACAAGGTGTTTGGTCTTTAGACGACTT
TCAATTTCTACCGTTTATTTGGGGAAGTGCTCAACTCATCGGGACTTCAATTGAACCAGT
AAAATTCGTTGAACCTGAAACAATTGAAGAATATAGAAAAGAGTACATGTTTATATCATG
CATTGACTACATTCAGCAAGTAAAGACAGGACATATTGCTGAGCATTCGAATCAATTATG
GAGTATTAGTGCAGTTCCATCATGGAGCAAAATTTGCACAGGTCTCATCAAAATGTATCA
AAAGGAAGTGCTTTCAAAATTTCCAGTTATTCAACATCTTCTTTTTGGTTCGATTTTCTC
ATTGGATCTAATAAAACCCGGTACAAGACTTCCACAGCCTAGACTTGGAATGGGTCCCCA
TAAATAAAAAATTGTAATTATTTAAAATAAAATCTATAATTATACCGTTAAAATCAACGA
CTTGTATTTTTTTGAAAAGC
>g6064.t4 Gene=g6064 Length=173
MALFKIGVLEKSDELAVAIKVFDLYLNFVRKLQVTYRLEPAGSQGVWSLDDFQFLPFIWG
SAQLIGTSIEPVKFVEPETIEEYRKEYMFISCIDYIQQVKTGHIAEHSNQLWSISAVPSW
SKICTGLIKMYQKEVLSKFPVIQHLLFGSIFSLDLIKPGTRLPQPRLGMGPHK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6064.t4 | Gene3D | G3DSA:1.20.120.1150 | - | 49 | 157 | 0 |
| 2 | g6064.t4 | PANTHER | PTHR10012 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B | 2 | 153 | 0 |
| 3 | g6064.t4 | PANTHER | PTHR10012:SF0 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2A ACTIVATOR | 2 | 153 | 0 |
| 1 | g6064.t4 | Pfam | PF03095 | Phosphotyrosyl phosphate activator (PTPA) protein | 2 | 152 | 0 |
| 4 | g6064.t4 | SUPERFAMILY | SSF140984 | PTPA-like | 2 | 153 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0019211 | phosphatase activator activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
