General information for g6065.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12.
Parent gene
- The parent gene g6065 is located on chr_2: 13972993..13973594 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6065 | g6065.t1 | TSS | g6065.t1 | 13972905 | 13972905 |
| chr_2 | g6065 | g6065.t1 | isoform | g6065.t1 | 13972993 | 13973594 |
| chr_2 | g6065 | g6065.t1 | exon | g6065.t1.exon1 | 13972993 | 13973087 |
| chr_2 | g6065 | g6065.t1 | cds | g6065.t1.CDS1 | 13972993 | 13973087 |
| chr_2 | g6065 | g6065.t1 | exon | g6065.t1.exon2 | 13973158 | 13973313 |
| chr_2 | g6065 | g6065.t1 | cds | g6065.t1.CDS2 | 13973158 | 13973313 |
| chr_2 | g6065 | g6065.t1 | exon | g6065.t1.exon3 | 13973372 | 13973393 |
| chr_2 | g6065 | g6065.t1 | cds | g6065.t1.CDS3 | 13973372 | 13973393 |
| chr_2 | g6065 | g6065.t1 | exon | g6065.t1.exon4 | 13973451 | 13973594 |
| chr_2 | g6065 | g6065.t1 | cds | g6065.t1.CDS4 | 13973451 | 13973594 |
| chr_2 | g6065 | g6065.t1 | TTS | g6065.t1 | 13973688 | 13973688 |
Sequences
>g6065.t1 Gene=g6065 Length=417
ATGGCTAATTTCTTTGGAGCTGATAAAGTCTTAAGACTTTTAGGATGGGTTCAAAAGAAT
GGAGGAATTTTAGCAACACTTAAAAAGGGCTTCAGAATGGACGAAGTAAAAGCAGGCACT
TTAGTTGGAGCTGATAAATATGGAAACAAATATTATGAAGACCCATCTCAATTTTATGGA
CGTAATCGTTGGGTGGAATTTGCTGACTACAAAAATTTAGAATACGATGGATCACAAATT
CCAGCTGAGTGGTTTGGTTGGATGCATTATAAAACTGATTTGCCTCCTCACCGTGATGGA
AACCGTAAACAATATAAATGGATGCAAGATCATTCAGAAAATCTGTCGGGTACTACTGAA
GCCTATATGCCATACTCAACTACACGTCCGAAAGTTGAAGCATGGAATCCAAAATAA
>g6065.t1 Gene=g6065 Length=138
MANFFGADKVLRLLGWVQKNGGILATLKKGFRMDEVKAGTLVGADKYGNKYYEDPSQFYG
RNRWVEFADYKNLEYDGSQIPAEWFGWMHYKTDLPPHRDGNRKQYKWMQDHSENLSGTTE
AYMPYSTTRPKVEAWNPK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g6065.t1 | PANTHER | PTHR12910:SF2 | NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 12 | 10 | 137 | 0 |
| 3 | g6065.t1 | PANTHER | PTHR12910 | NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.2 | 10 | 137 | 0 |
| 1 | g6065.t1 | Pfam | PF05071 | NADH ubiquinone oxidoreductase subunit NDUFA12 | 39 | 137 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0032981 | mitochondrial respiratory chain complex I assembly | BP |
| GO:0016020 | membrane | CC |
KEGG
Orthology
- This transcript has been annotated with K11352 (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
