Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Ethanolaminephosphotransferase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6091 g6091.t2 TTS g6091.t2 14076607 14076607
chr_2 g6091 g6091.t2 isoform g6091.t2 14076799 14077788
chr_2 g6091 g6091.t2 exon g6091.t2.exon1 14076799 14076855
chr_2 g6091 g6091.t2 cds g6091.t2.CDS1 14076799 14076855
chr_2 g6091 g6091.t2 exon g6091.t2.exon2 14076925 14077173
chr_2 g6091 g6091.t2 cds g6091.t2.CDS2 14076925 14077173
chr_2 g6091 g6091.t2 exon g6091.t2.exon3 14077230 14077410
chr_2 g6091 g6091.t2 cds g6091.t2.CDS3 14077230 14077410
chr_2 g6091 g6091.t2 exon g6091.t2.exon4 14077474 14077697
chr_2 g6091 g6091.t2 cds g6091.t2.CDS4 14077474 14077634
chr_2 g6091 g6091.t2 exon g6091.t2.exon5 14077785 14077788
chr_2 g6091 g6091.t2 TSS g6091.t2 NA NA

Sequences

>g6091.t2 Gene=g6091 Length=715
TTATCTCACACATTTTGAAAAATATAACACTGGAGTGTTATTTTTGCCTTATGCCTATGA
TTATGTCATGTGGAGTTGCAGTATTACGCTGCTTGTGGCTGGATTTTTTGGTCCACAATT
ATTTACAACTCCTATTTTTGGCATCAAACCAACAGTTTATGTTGAATTCATAATGTACAT
AGCGGGAATTGTTACTAGCCATCCTGTAATTGCATGGAATATTTACAAGTCATATCGTGA
TAAAACAGGAAAAATGAGACCGCTCGTGGAAGCCTTTAGACCACTTTATCCAGTTGCAGG
ACTTTTTGTAATATCAACACTGTGGGTTGTATTTTCACCAAATGAAATCATGAAAGTTGA
TCCACGAATGTTCATTATGGTGACAGGCACAATATTCTCCAATATAAGTTGCAGACTGAT
TGTTGCCCAAATGAGTGACACGCGAACGGACGGTTGGAATTTGCAATTGTGGGGATATTT
ATTCGCAACTTTCATTTGCATTTTCCCTTACGAATGTATCGAAATGCCTCGACTTCCACA
GCATTGTGAATATGGAATTTTGTTGACGTTAGTCGTCGTATTTAGTGTACAACATTTTCA
TTATGGCTATGGTGTAGTTACAGAAATGTGTCAGCATTTTGGTATAAAATGCTTCACGAT
TAAACCAAAAGTGCCAACAAAAAATGGAAATGGCGAAGCCGTGCATAGTGTATGA

>g6091.t2 Gene=g6091 Length=215
MWSCSITLLVAGFFGPQLFTTPIFGIKPTVYVEFIMYIAGIVTSHPVIAWNIYKSYRDKT
GKMRPLVEAFRPLYPVAGLFVISTLWVVFSPNEIMKVDPRMFIMVTGTIFSNISCRLIVA
QMSDTRTDGWNLQLWGYLFATFICIFPYECIEMPRLPQHCEYGILLTLVVVFSVQHFHYG
YGVVTEMCQHFGIKCFTIKPKVPTKNGNGEAVHSV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g6091.t2 PANTHER PTHR10414:SF36 GH11618P 1 202 6.3E-69
2 g6091.t2 PANTHER PTHR10414 ETHANOLAMINEPHOSPHOTRANSFERASE 1 202 6.3E-69
14 g6091.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 20 -
15 g6091.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
16 g6091.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 15 -
21 g6091.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 16 20 -
12 g6091.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 21 29 -
17 g6091.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 30 53 -
10 g6091.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 54 72 -
18 g6091.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 73 89 -
11 g6091.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 90 100 -
20 g6091.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 101 119 -
9 g6091.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 120 130 -
19 g6091.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 131 148 -
13 g6091.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 149 215 -
5 g6091.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 7 26 -
8 g6091.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 30 52 -
4 g6091.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 73 90 -
3 g6091.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 100 119 -
7 g6091.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 132 151 -
6 g6091.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 162 184 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values