General information for g6094.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as E3 ubiquitin-protein ligase Su(dx).
Parent gene
- The parent gene g6094 is located on chr_2: 14090824..14093246 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6094 | g6094.t5 | isoform | g6094.t5 | 14090824 | 14092805 |
| chr_2 | g6094 | g6094.t5 | exon | g6094.t5.exon1 | 14090824 | 14091699 |
| chr_2 | g6094 | g6094.t5 | cds | g6094.t5.CDS1 | 14090824 | 14091621 |
| chr_2 | g6094 | g6094.t5 | exon | g6094.t5.exon2 | 14092625 | 14092805 |
| chr_2 | g6094 | g6094.t5 | TSS | g6094.t5 | 14092805 | 14092805 |
| chr_2 | g6094 | g6094.t5 | TTS | g6094.t5 | NA | NA |
Sequences
>g6094.t5 Gene=g6094 Length=1057
AGTTTTGTGTAAAAAAAGAATTGCTTGTGAGAGAAATTTTTGTTATTTTCGTAATTTCAA
CTAATATTAACGCCATAAACGTATATTAAATAGTATTAACAATCGGTGGCTATTGGGTGA
TATCGAACAACTCTAGGAATAATCTTGAGATATAGGATATTTCGTAAAATAGTTTAATTG
GATTTATATCAAAATGAATTCCTTCTTCTGAGAATTATTTTTATTGCATCATTTGAAAGA
AAAGAAATTAAGAATAATAATGGCAGATTCAAATTCGTCAAATAGAACTCCTGCAATTAA
TCAAGGCTTTCATCAATTACAAATAACAATAGAGCATGCATCATTACGTAATTCATCGTT
TTTAAAGCCAAATCCATATGTAGAACTTTCGGTCGATTCAAATCCTGCTCGCAAAACAGA
TTATCAAAAGACGACATATCTGCCTAAATGGAATGACACATTTACTGTGTTGGTCACACC
AACATCAATTTTGCAATTCCGAGTATATGACCATTCAAATTTTCGCAAAGATTCATTAAT
TGGTGAACAAACAGTGCATTTAGTTCAAATATTACAACATTATAATGGTCGTTGTGAGAA
TTTAGAATTGGCAATGGACCTTCTTTATGAATCAAAATCAGAAGGAAGACAAATAAAAAA
TGGTGAGCTAGTTGCAGTACTAAATGGTTTAAAAATCGATATGGTACAGAATAATGGTAA
TGATACTCAAGCTCGATCTGTAACAGATCTCTCGTTTCAAAATGGTGCAATGTTGAGAAG
TTCGATACTGAATGGCGGTATACGATCACGCATGAGGCTAAGAAGTAGTAATAACAATGG
TTCAATACCGACACAACAACAACAAAATGGAAATGTGATACCTGCTGGTCAGAATGGTGT
AAATAATAGTAGTGGATTAGTTCAAAGTCCATCAACAGGTGCTGTAAGAAGATCTAGTGG
AATGAATCAATGGGATCAACCACCATCACAACCGATGAATAACTATCAACGACTTACACC
AGCCTTTTCAAATCCTCCTATAATGAATCCACAACAA
>g6094.t5 Gene=g6094 Length=266
MADSNSSNRTPAINQGFHQLQITIEHASLRNSSFLKPNPYVELSVDSNPARKTDYQKTTY
LPKWNDTFTVLVTPTSILQFRVYDHSNFRKDSLIGEQTVHLVQILQHYNGRCENLELAMD
LLYESKSEGRQIKNGELVAVLNGLKIDMVQNNGNDTQARSVTDLSFQNGAMLRSSILNGG
IRSRMRLRSSNNNGSIPTQQQQNGNVIPAGQNGVNNSSGLVQSPSTGAVRRSSGMNQWDQ
PPSQPMNNYQRLTPAFSNPPIMNPQQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6094.t5 | CDD | cd04021 | C2_E3_ubiquitin_ligase | 17 | 142 | 2.18519E-53 |
| 5 | g6094.t5 | Gene3D | G3DSA:2.60.40.150 | - | 16 | 156 | 1.7E-28 |
| 8 | g6094.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 244 | - |
| 2 | g6094.t5 | PANTHER | PTHR11254:SF66 | E3 UBIQUITIN-PROTEIN LIGASE ITCHY HOMOLOG | 16 | 219 | 2.7E-14 |
| 3 | g6094.t5 | PANTHER | PTHR11254 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE | 16 | 219 | 2.7E-14 |
| 1 | g6094.t5 | Pfam | PF00168 | C2 domain | 19 | 108 | 3.3E-16 |
| 9 | g6094.t5 | ProSiteProfiles | PS50004 | C2 domain profile. | 19 | 98 | 11.996 |
| 7 | g6094.t5 | SMART | SM00239 | C2_3c | 19 | 113 | 4.4E-9 |
| 4 | g6094.t5 | SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 16 | 131 | 2.68E-18 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
