General information for g6112.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Canalicular multispecific organic anion transporter 2.
Parent gene
- The parent gene g6112 is located on chr_2: 14183326..14184274 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6112 | g6112.t1 | TTS | g6112.t1 | 14177199 | 14177199 |
| chr_2 | g6112 | g6112.t1 | isoform | g6112.t1 | 14177271 | 14183931 |
| chr_2 | g6112 | g6112.t1 | exon | g6112.t1.exon1 | 14177271 | 14177555 |
| chr_2 | g6112 | g6112.t1 | cds | g6112.t1.CDS1 | 14177271 | 14177555 |
| chr_2 | g6112 | g6112.t1 | exon | g6112.t1.exon2 | 14177612 | 14178169 |
| chr_2 | g6112 | g6112.t1 | cds | g6112.t1.CDS2 | 14177612 | 14178169 |
| chr_2 | g6112 | g6112.t1 | exon | g6112.t1.exon3 | 14178231 | 14178469 |
| chr_2 | g6112 | g6112.t1 | cds | g6112.t1.CDS3 | 14178231 | 14178469 |
| chr_2 | g6112 | g6112.t1 | exon | g6112.t1.exon4 | 14178526 | 14178605 |
| chr_2 | g6112 | g6112.t1 | cds | g6112.t1.CDS4 | 14178526 | 14178605 |
| chr_2 | g6112 | g6112.t1 | exon | g6112.t1.exon5 | 14178663 | 14179212 |
| chr_2 | g6112 | g6112.t1 | cds | g6112.t1.CDS5 | 14178663 | 14179212 |
| chr_2 | g6112 | g6112.t1 | exon | g6112.t1.exon6 | 14179272 | 14179507 |
| chr_2 | g6112 | g6112.t1 | cds | g6112.t1.CDS6 | 14179272 | 14179507 |
| chr_2 | g6112 | g6112.t1 | exon | g6112.t1.exon7 | 14179566 | 14179668 |
| chr_2 | g6112 | g6112.t1 | cds | g6112.t1.CDS7 | 14179566 | 14179668 |
| chr_2 | g6112 | g6112.t1 | exon | g6112.t1.exon8 | 14179723 | 14179796 |
| chr_2 | g6112 | g6112.t1 | cds | g6112.t1.CDS8 | 14179723 | 14179796 |
| chr_2 | g6112 | g6112.t1 | exon | g6112.t1.exon9 | 14179853 | 14181299 |
| chr_2 | g6112 | g6112.t1 | cds | g6112.t1.CDS9 | 14179853 | 14181299 |
| chr_2 | g6112 | g6112.t1 | exon | g6112.t1.exon10 | 14181371 | 14182361 |
| chr_2 | g6112 | g6112.t1 | cds | g6112.t1.CDS10 | 14181371 | 14182361 |
| chr_2 | g6112 | g6112.t1 | exon | g6112.t1.exon11 | 14183893 | 14183931 |
| chr_2 | g6112 | g6112.t1 | cds | g6112.t1.CDS11 | 14183893 | 14183931 |
| chr_2 | g6112 | g6112.t1 | TSS | g6112.t1 | 14184274 | 14184274 |
Sequences
>g6112.t1 Gene=g6112 Length=4602
ATGAGTAGTGATCAAGGATTTTGTCCTGATGAACTTTGGGACACAGATCTTACATGGCGC
ACAGATGATCCTCGATTTACAGAATGTTTTATGCACGTCGCCTTAGTTTGGGGTCCATGT
CTTTTTCTCGCCTTCTTTTCTCTCTTCGATGTGTACTTTCGCAGTAAAAGCCGTTACAGT
GACATACCATGGAGTTTTCTCAATCTTTTTAAAATGCTTTTGGCAATTTTACTGATAGCA
TTATCAGCCACAGAACTCGCGATAATTCTCACAACTGATGCAACAATTTACAATGTTCAA
ATTACAACAGCATCAATTAAAATAGCAACTTTTGTACTTGTTTTAATTTTACAATATTAT
CACAAAATCAAAGGACATAGAACTTCTGGTTTGCTCTTCAATTTTTGGCTTTTACTTATG
GTCTTTGCAATTCCAGAGCTTCTTTTTACAATCAATTATCGAACACAAGATACACAATGG
GAACAATTTCAATATATAAGCTACATTGTTTACTTTTCAATCATTTGTGTTATGCTTTTT
GCCAATTTCTTTGCTGACAAAGCTCCACGACATACAACATACAGAAAATATGCAAATCCA
AGTCCTGAACTTCATTCAAGCTTTATTAGACAAGTTTTCTTCCAATGGTTTGATAAAACA
TGCTGGGTTGGTTGGAGAAGAACCTTGGAAGAAAAAGACATTTATGACATCAATCCAGAT
GATGCAAGTGAAGAACTTGTGCCACCATTTGATAAATATTTTAATGAAAGTGTTGAAAAA
GCAAGAAGAAAAGAGCAACAATTAAAAAAGAAGAATGGTGAAAAGCAAAGCACTGAAGTC
ACTGAAACATGGAGAAGAACAAACGGTTCGATTTTAGGAGCTATGGTTAAAGCTTATGGT
GGACCGTTTTGGTTTGCTGGTTTCCTTCAACTTATTATCAATGGTTTAACTTTTGCATCA
CCATTGTTGTTAAATGAACTTATCACTTATGTTGCTTTAAGTTCAATATTTCCACTTCCA
GCATGGCAAGGTTGGGCAATGGTCGTTGGCTTTTTCTTAGTTTCATTCTTCACTGCCATT
TTCAATGGACTTTATTACAAAGCAACTTTCCTTGTTGGTTTCCGTATCAGAACTGGTTTA
ATTAGTGCAATTTATCGTAAAGCTTTAAGAATTTCGAGTGCAGCAAAAAAAGATACAACT
GTTGGTGAAATTGTAAATTTAATGGCTGTTGATGCTCAAAGATTCTTTGAACTTATTTCA
TATGTCCATATATTATGGAGTGGTCCATTGATCATTGGTGTTGCAATTTATTTTATATGG
GAACAATTGAATTATGGTGTAATTGCTGGTGTTTTAGTCATGATTCTTATCACACCGTTA
TCAGGAATTATTGCTGCTAAATTGCGTAACTTACAAGTCGAACAAATGAAGATCAAAGAC
GAACGTGTGAAATCAATGAATGAAATTTTAAATGGAATGAAAGTTTTGAAACTTTATGCA
TGGGAACCAAGTTTTGAGAAACTTATTCTTGGTATTCGTGAAAAAGAAATGGTTGTTTTA
AGAAAAGCAGCAGTTCTTAATGCAGGAACATATTTTGTATGGACTTTAGCACCATTTTTA
GTACAACTTGCTTCTTATATTACTTATGTCTTACTTGGTGGTCGACTTGATGCAAACAAA
GCTTTTGTTTCAGCTGCATTGTTTAATATTTTAAGATTTCCAATGGCAATGTTTCCAATG
ATGATTGCGTTTATGGCTCAAGCATGGGTTAGTGTTAAACGTATCAATAATTTCCTTAAT
TCTGAAGAAATTGATCCAAATAATGTGACAAGATATAAAAGTGAATATGCATTACAAATT
TTACATGGAACATTCACATGGGGCGGTGAAACAACAACTTTAAAAAACATCAACATGAAA
GTTAAGAAAGGAAATTTAACAGCAATTGTTGGTTCAGTTGGAAGTGGCAAAACTTCGTTA
ATTTCAGCATTACTTGGCGAAATGCAAAAACTTGATGGTTCTGTAAACGTTGATGGAAGT
ATTGCATATGTTCCACAGCAAGCTTGGATTCAAAATGCAACACTTAAGGACAATATAATC
TTTGGAAGACCATTTAATAAAGAATGGTACAATAAAGTTATTGATGCTTGTGCACTTCGT
GCTGACCTAGCAATGTTACCTGGTGGTGATCAAACTGAAATTGGTGAAAAAGGAATAAAT
TTGTCAGGTGGACAAAAACAAAGAGTTGCACTTGCAAGAGCTGTTTATAGTCAAGCAGAA
GTTTTTCTTTTTGATGATCCTTTAAGTGCAGTAGATTCACACGTCGGCAAACATATTTTT
GATAATGTACTTGGTGAAAATGGTTTACTTAAAGGAAAATCACGACTACTCGTTACACAT
GCTGTAGTTTATTTACCAAAAGTTGATGAAATTTATGTTATGGTGAATGGTGAAATTACT
GAAAGTGGTTCATACAAACAATTGCTTGCAGAAAAAGGAGCATTCTCAGAATTTTTGACT
CAACATATTCAAGAAATTGATGATGATGAAGAACTTCAAGTTTTACAAGAAACAGTTCAA
GATGATAATCTTAAGAAAATGCTAGAAAGACAACAATCAACAATGTCATCAGTTTCAAGT
AATCCTGAAAAAAGTTCATTAAGCGGTTCAATAAGAAGACGAAAAACGAGTCAAAGAAGA
CAATCAGAAAAGAGTTTAAAAGAAATAGAAGAAAAACCTAAAGCAAGACTAACAGAAACA
GAAGAAGCAGCAACTGGAGCAGTCGGAATCAAAGTTTATATTCGTTACTTCCAAAGTATT
GGTATATTGCTAAGTATTGGAGCAGTATTAAGTAACGCAGTCAATTCAGGCGCAAGCATT
GGTGCAAGTCTTTGGCTTGAGGAATGGACAAACGATAGCCGTGTTTTGGAAGACGATCCA
ATTGACATGTGGTGGCGAAATTTCTACATGATAATTTATGCCATTCTTGGTTTAGCACAA
GCTTTAGCTCTGTTGATAACTTCATTGATTTTTGCAATTGGATGCTTGCGAGCTGCTCGT
GATCTTCATGCAAAACTTTTATTCAACGTTTTACGACTTCCAATGTCATTTTTCGATACA
ACACCCCTTGGCAGAGTTTTAAATCGTTTCTCAAAAGATCTCGATGTTATCGATAATGTT
CTTCCAATGACAATGAGATTTTGGATGGTGATGTTCTTCGCTGTGCTTTCAGTTTTTGTA
GTCATTTCTTATTCTACTCCAATGTTTTTGGCTGTTGCTATTCCAATGATATTTTTGTAC
TATTTCATTCAAAGATTTTATGTTTCAACATCAAGACAACTTAAGAGAATTGAATCAATC
ACAAGATCACCAATTTATACACATTTTAGTGAAACTATCACAGGACAATCGACTATTAGA
GCTTATGGAGAAGAAAATAGATTCACTCTAGAAAGCGAAAAAAGAGTCGACTACAATCAA
ATGATGTCTTATCCATCAATTATTGCTAATAGATGGCTTGGTGTTCGTCTTGAAATTCTT
GGTGCTGTAATTGTCTTCTTTGCTGCATTTTTCGCTCTAATTTTTGATATCGGTCCATCA
ACTGTTGGTCTTTCAATTTCTTATGCCTTACAAGTTTCTTCAACTCTCAATATGTTGTGC
AGAATGACAACTGAAGTTGAAACGAACATTGTTGCAATTGAAAGACTTGACGAATATTCT
GATGAAAAACAAGAAGCTCCGTGGAAAACAATTGATGTTGATGAAACTTGGCCACAAAAA
GGAGTTGTTGAATTCAGAGATTTCCAAGTTCGCTATCGTGAAGGACTTGAACTTGTTCTT
AAAGGAATAACTTTCAATGTCAATACATTAGAGAAAATTGGAATTGTAGGCCGAACTGGT
GCTGGCAAATCAAGTTTAACTTTATCATTATTTAGAATTATTGAAGCTGCAGGTGGTAAA
ATTATAATTGATGGAATTGACATTTCAACAATTGGATTGCATTCATTGAGATCAAGATTG
ACAATTATTCCTCAAGACCTTGTTTTATTTAGTGGCAGTTTAAGAATGAATATCGATCCA
TTTAATTCATATTCTGATGATGCTATTTGGAAAGCTTTAGAGCAATCACATTTGAAAACA
TTTGTTAAAGGTCTCAATGATGGCTTAGAGTATAAAATTGCAGAAGGCGGTGAAAATTTG
TCGGTTGGTCAAAGACAACTTGTTTGTCTTGCAAGAGCTTTATTGCGTAAAACAAAAGTT
TTAATTCTTGATGAAGCAACAGCAGCAATTGATATTGAAACTGATGAATTGATTCAGAAC
ACAATTCGAACACAATTCAAAGACTGTACAATCTTAACAATTGCACATCGTCTCAATACA
ATTATGGATTCAGATAGAATTATTGTCTTAGACAAAGGAGAAATTGCAGAATTTGACACA
GTTGATGCATTGCTGTCTAACAAAGATTCAATTTTCTATGGCATGGCTAAAAATGCTGGT
TTAGTAAACACAACAGCAGATATGACAATCGATGAAGCCATAGATGAAGCTTTCCGCATA
GACGATGATGACAATAATAAAAATGAAACAACAAGAATGTGA
>g6112.t1 Gene=g6112 Length=1533
MSSDQGFCPDELWDTDLTWRTDDPRFTECFMHVALVWGPCLFLAFFSLFDVYFRSKSRYS
DIPWSFLNLFKMLLAILLIALSATELAIILTTDATIYNVQITTASIKIATFVLVLILQYY
HKIKGHRTSGLLFNFWLLLMVFAIPELLFTINYRTQDTQWEQFQYISYIVYFSIICVMLF
ANFFADKAPRHTTYRKYANPSPELHSSFIRQVFFQWFDKTCWVGWRRTLEEKDIYDINPD
DASEELVPPFDKYFNESVEKARRKEQQLKKKNGEKQSTEVTETWRRTNGSILGAMVKAYG
GPFWFAGFLQLIINGLTFASPLLLNELITYVALSSIFPLPAWQGWAMVVGFFLVSFFTAI
FNGLYYKATFLVGFRIRTGLISAIYRKALRISSAAKKDTTVGEIVNLMAVDAQRFFELIS
YVHILWSGPLIIGVAIYFIWEQLNYGVIAGVLVMILITPLSGIIAAKLRNLQVEQMKIKD
ERVKSMNEILNGMKVLKLYAWEPSFEKLILGIREKEMVVLRKAAVLNAGTYFVWTLAPFL
VQLASYITYVLLGGRLDANKAFVSAALFNILRFPMAMFPMMIAFMAQAWVSVKRINNFLN
SEEIDPNNVTRYKSEYALQILHGTFTWGGETTTLKNINMKVKKGNLTAIVGSVGSGKTSL
ISALLGEMQKLDGSVNVDGSIAYVPQQAWIQNATLKDNIIFGRPFNKEWYNKVIDACALR
ADLAMLPGGDQTEIGEKGINLSGGQKQRVALARAVYSQAEVFLFDDPLSAVDSHVGKHIF
DNVLGENGLLKGKSRLLVTHAVVYLPKVDEIYVMVNGEITESGSYKQLLAEKGAFSEFLT
QHIQEIDDDEELQVLQETVQDDNLKKMLERQQSTMSSVSSNPEKSSLSGSIRRRKTSQRR
QSEKSLKEIEEKPKARLTETEEAATGAVGIKVYIRYFQSIGILLSIGAVLSNAVNSGASI
GASLWLEEWTNDSRVLEDDPIDMWWRNFYMIIYAILGLAQALALLITSLIFAIGCLRAAR
DLHAKLLFNVLRLPMSFFDTTPLGRVLNRFSKDLDVIDNVLPMTMRFWMVMFFAVLSVFV
VISYSTPMFLAVAIPMIFLYYFIQRFYVSTSRQLKRIESITRSPIYTHFSETITGQSTIR
AYGEENRFTLESEKRVDYNQMMSYPSIIANRWLGVRLEILGAVIVFFAAFFALIFDIGPS
TVGLSISYALQVSSTLNMLCRMTTEVETNIVAIERLDEYSDEKQEAPWKTIDVDETWPQK
GVVEFRDFQVRYREGLELVLKGITFNVNTLEKIGIVGRTGAGKSSLTLSLFRIIEAAGGK
IIIDGIDISTIGLHSLRSRLTIIPQDLVLFSGSLRMNIDPFNSYSDDAIWKALEQSHLKT
FVKGLNDGLEYKIAEGGENLSVGQRQLVCLARALLRKTKVLILDEATAAIDIETDELIQN
TIRTQFKDCTILTIAHRLNTIMDSDRIIVLDKGEIAEFDTVDALLSNKDSIFYGMAKNAG
LVNTTADMTIDEAIDEAFRIDDDDNNKNETTRM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 54 | g6112.t1 | CDD | cd18595 | ABC_6TM_MRP1_2_3_6_D1_like | 305 | 595 | 2.65402E-142 |
| 52 | g6112.t1 | CDD | cd03250 | ABCC_MRP_domain1 | 618 | 818 | 5.30283E-117 |
| 53 | g6112.t1 | CDD | cd18603 | ABC_6TM_MRP1_2_3_6_D2_like | 945 | 1240 | 2.17527E-134 |
| 51 | g6112.t1 | CDD | cd03244 | ABCC_MRP_domain2 | 1261 | 1480 | 4.25989E-123 |
| 16 | g6112.t1 | Coils | Coil | Coil | 258 | 278 | - |
| 15 | g6112.t1 | Coils | Coil | Coil | 892 | 912 | - |
| 17 | g6112.t1 | Coils | Coil | Coil | 1533 | 1533 | - |
| 14 | g6112.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 260 | 606 | 1.4E-21 |
| 12 | g6112.t1 | Gene3D | G3DSA:3.40.50.300 | - | 617 | 849 | 1.9E-71 |
| 13 | g6112.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 907 | 1247 | 1.4E-47 |
| 11 | g6112.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1248 | 1497 | 4.0E-85 |
| 75 | g6112.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 870 | 920 | - |
| 77 | g6112.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 870 | 887 | - |
| 76 | g6112.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 901 | 919 | - |
| 5 | g6112.t1 | PANTHER | PTHR24223 | ATP-BINDING CASSETTE SUB-FAMILY C | 86 | 1501 | 0.0 |
| 6 | g6112.t1 | PANTHER | PTHR24223:SF405 | CANALICULAR MULTISPECIFIC ORGANIC ANION TRANSPORTER 2 | 86 | 1501 | 0.0 |
| 1 | g6112.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 304 | 575 | 1.5E-28 |
| 4 | g6112.t1 | Pfam | PF00005 | ABC transporter | 634 | 768 | 1.6E-21 |
| 2 | g6112.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 948 | 1208 | 8.9E-46 |
| 3 | g6112.t1 | Pfam | PF00005 | ABC transporter | 1280 | 1428 | 8.8E-28 |
| 33 | g6112.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 29 | - |
| 46 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 30 | 53 | - |
| 24 | g6112.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 54 | 64 | - |
| 49 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 65 | 90 | - |
| 31 | g6112.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 91 | 95 | - |
| 37 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 96 | 119 | - |
| 18 | g6112.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 120 | 130 | - |
| 39 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 153 | - |
| 28 | g6112.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 154 | 164 | - |
| 42 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 165 | 185 | - |
| 20 | g6112.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 186 | 302 | - |
| 35 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 303 | 324 | - |
| 26 | g6112.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 325 | 343 | - |
| 36 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 344 | 366 | - |
| 21 | g6112.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 367 | 417 | - |
| 40 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 418 | 440 | - |
| 29 | g6112.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 441 | 445 | - |
| 44 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 446 | 468 | - |
| 23 | g6112.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 469 | 522 | - |
| 43 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 523 | 549 | - |
| 34 | g6112.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 550 | 560 | - |
| 48 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 561 | 586 | - |
| 25 | g6112.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 587 | 939 | - |
| 45 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 940 | 966 | - |
| 32 | g6112.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 967 | 987 | - |
| 47 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 988 | 1016 | - |
| 19 | g6112.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1017 | 1066 | - |
| 41 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1067 | 1084 | - |
| 30 | g6112.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1085 | 1089 | - |
| 38 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1090 | 1108 | - |
| 22 | g6112.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1109 | 1176 | - |
| 50 | g6112.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1177 | 1195 | - |
| 27 | g6112.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1196 | 1533 | - |
| 73 | g6112.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 741 | 755 | - |
| 74 | g6112.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 1400 | 1414 | - |
| 80 | g6112.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 304 | 587 | 37.766 |
| 82 | g6112.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 618 | 841 | 23.603 |
| 79 | g6112.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 946 | 1228 | 39.167 |
| 81 | g6112.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1263 | 1497 | 17.947 |
| 71 | g6112.t1 | SMART | SM00382 | AAA_5 | 643 | 809 | 2.3E-10 |
| 72 | g6112.t1 | SMART | SM00382 | AAA_5 | 1289 | 1474 | 2.4E-14 |
| 7 | g6112.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 293 | 603 | 1.57E-37 |
| 9 | g6112.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 607 | 840 | 4.26E-57 |
| 8 | g6112.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 946 | 1247 | 3.01E-56 |
| 10 | g6112.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1256 | 1495 | 1.45E-71 |
| 78 | g6112.t1 | TIGRFAM | TIGR00957 | MRP_assoc_pro: multi drug resistance-associated protein (MRP) | 9 | 1501 | 0.0 |
| 68 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 30 | 49 | - |
| 66 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 69 | 91 | - |
| 58 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 96 | 118 | - |
| 59 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 131 | 153 | - |
| 62 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 163 | 185 | - |
| 64 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 302 | 324 | - |
| 57 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 344 | 366 | - |
| 60 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 418 | 440 | - |
| 67 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 444 | 466 | - |
| 63 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 531 | 553 | - |
| 56 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 568 | 590 | - |
| 70 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 940 | 962 | - |
| 69 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 991 | 1013 | - |
| 61 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1067 | 1084 | - |
| 65 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1089 | 1108 | - |
| 55 | g6112.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1172 | 1194 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0005524 | ATP binding | MF |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0022857 | transmembrane transporter activity | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05665 (ATP-binding cassette, subfamily C (CFTR/MRP), member 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed