General information for g6146.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Speckle-type POZ protein-like.
Parent gene
- The parent gene g6146 is located on chr_2: 14501110..14502269 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6146 | g6146.t2 | TTS | g6146.t2 | 14501026 | 14501026 |
| chr_2 | g6146 | g6146.t2 | isoform | g6146.t2 | 14501110 | 14501725 |
| chr_2 | g6146 | g6146.t2 | exon | g6146.t2.exon1 | 14501110 | 14501725 |
| chr_2 | g6146 | g6146.t2 | cds | g6146.t2.CDS1 | 14501110 | 14501553 |
| chr_2 | g6146 | g6146.t2 | TSS | g6146.t2 | 14502354 | 14502354 |
Sequences
>g6146.t2 Gene=g6146 Length=616
ATTAAGACAAAAACGAAGACAAATTAAGATAGTAGAATCAAATGAATTGCTTCGCAATAC
AAAACTATTTAATTCAATCAAGGATAGCGACTTTACGTGCATATCTTCAGATGGCAAAGA
ATTTCCTGTTCATTCCAAGATTTTAGCTTCACAATCTCCAGTTTTCGACAAAATGTTTAA
TGCTGATATGAGTGAGACTAAAACAAAGACTGTTAAAATTGATGATATTGATGGCGATAC
ATTTTTGGAATTTTTGAGATTCATATATACTGGACAAGTAGAGAATTTAGAAGATATGGT
TTCATCACTGATCTATGTTGCTGATAAATATGAAATAATCAAACTCAAGAAGCTATGTAC
TGAATCACTTATGAAAAATTTGTCTATTGGAAATGCTTCGGAAACACTCATTTTAGCTGA
TCGCTTCAACGAAAATTTCTTGCTATATGAATGCATACAAATAATTATCAGAAGCAATCA
TAATTTTAGATCAAATAAGAGCCTGGAGCAAAACATCAAAGAGTTGATTGATTTTGAATT
AGTTAAAAAAGTGATGGATATTAATGATATCATTAAAGAAAATGATAAAATTATTGAATT
TAACAGTACACTTTAA
>g6146.t2 Gene=g6146 Length=147
MFNADMSETKTKTVKIDDIDGDTFLEFLRFIYTGQVENLEDMVSSLIYVADKYEIIKLKK
LCTESLMKNLSIGNASETLILADRFNENFLLYECIQIIIRSNHNFRSNKSLEQNIKELID
FELVKKVMDINDIIKENDKIIEFNSTL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6146.t2 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 99 | 0.000 |
| 2 | g6146.t2 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 1 | 116 | 0.000 |
| 3 | g6146.t2 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 1 | 116 | 0.000 |
| 1 | g6146.t2 | Pfam | PF00651 | BTB/POZ domain | 1 | 69 | 0.000 |
| 6 | g6146.t2 | ProSiteProfiles | PS50097 | BTB domain profile. | 1 | 40 | 9.082 |
| 4 | g6146.t2 | SUPERFAMILY | SSF54695 | POZ domain | 1 | 68 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed