Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Speckle-type POZ protein-like.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6147 g6147.t1 isoform g6147.t1 14503082 14504287
chr_2 g6147 g6147.t1 exon g6147.t1.exon1 14503082 14503211
chr_2 g6147 g6147.t1 cds g6147.t1.CDS1 14503082 14503211
chr_2 g6147 g6147.t1 exon g6147.t1.exon2 14503275 14503744
chr_2 g6147 g6147.t1 cds g6147.t1.CDS2 14503275 14503744
chr_2 g6147 g6147.t1 exon g6147.t1.exon3 14503803 14504076
chr_2 g6147 g6147.t1 cds g6147.t1.CDS3 14503803 14504076
chr_2 g6147 g6147.t1 exon g6147.t1.exon4 14504148 14504287
chr_2 g6147 g6147.t1 cds g6147.t1.CDS4 14504148 14504287
chr_2 g6147 g6147.t1 TSS g6147.t1 14504349 14504349
chr_2 g6147 g6147.t1 TTS g6147.t1 NA NA

Sequences

>g6147.t1 Gene=g6147 Length=1014
ATGTCTAATAGTGATAGATATATAGCAAAAACAAAAATATTGTGGAAGATCAACAATGTA
ACTCTAGAAACATTGAAAAATGGTGTTAATCTTTACTCAAGCGATTTCAAAGTCTTGCTT
GGTCCAAACGAAACTGAATGGTGCCTCAATTTCTTATGTGATGATGATTCAATTTATTTT
TACTTGCATCGAAAAACTTTTAAAATTGATGACTTTATTATGAATCAAAAGCTGGAAATT
CGTGGATCAGATGCTAAAACCAAAAGATTTTATGAAGGAAATGAAAATGAAGAATCAAAT
AAATACACTGAAGATGAACCGAGCTGGGGTTTAGAAATTGGCATGATTCAAGATATTCTA
AATGAAGAAAATAAATATCTTATTGATGGCCATACATTGACATTGTGGTTTAAGTTAACA
TTGCGAACAAAAATCAAACCACTGGAATCTAATGTTTTGCTTCTCAATTATGCGAAACTA
TTTAATTCAATCGACTATAGCGATTTTACATGTATATCTTCAGATGGCAAAGAATTTCCT
GTTCATTCCAACATTTTAGCTGCACAATCTCCAGTTTTCGACAAAATGTTCAAGGCAAAT
ATGAGTGAAAGTAAATCAAAATCTGGTAAATTTAATGATATTGATGGCGATACATTTTTG
GAATTTTTGAGATTTATTTATACTGGACAAGTAGAGAATTTAGAAGATATAGCTTCATCA
GTAATATATGCTGCTGATAAATATGAAATTATTGAGCTCAAGAAGCTATGTGCTGAATCA
CTCATGGAAAATCTATCTGTTGAAAATGTCTTGGAAATACTCATTTTGGCTGATCACTTT
AATGAAAAACTCTTGTTAACTGAATGCATAGAATTAATTGTAGAAAATTATTACGATCTA
AAAGATGAAGAAAGCTGGAAAAGTATTGAAGCAAAGTTGATGAAAATGGTAATGGACATC
ATTATTGAACAATGTCGTGAAAAAATAACTGAATTCAACAATTCGCTTAAATAA

>g6147.t1 Gene=g6147 Length=337
MSNSDRYIAKTKILWKINNVTLETLKNGVNLYSSDFKVLLGPNETEWCLNFLCDDDSIYF
YLHRKTFKIDDFIMNQKLEIRGSDAKTKRFYEGNENEESNKYTEDEPSWGLEIGMIQDIL
NEENKYLIDGHTLTLWFKLTLRTKIKPLESNVLLLNYAKLFNSIDYSDFTCISSDGKEFP
VHSNILAAQSPVFDKMFKANMSESKSKSGKFNDIDGDTFLEFLRFIYTGQVENLEDIASS
VIYAADKYEIIELKKLCAESLMENLSVENVLEILILADHFNEKLLLTECIELIVENYYDL
KDEESWKSIEAKLMKMVMDIIIEQCREKITEFNNSLK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g6147.t1 CDD cd14733 BACK 266 319 0.0000044
6 g6147.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 140 295 0.0000000
2 g6147.t1 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 15 311 0.0000000
1 g6147.t1 Pfam PF00651 BTB/POZ domain 159 264 0.0000000
7 g6147.t1 ProSiteProfiles PS50097 BTB domain profile. 167 235 16.2380000
5 g6147.t1 SMART SM00225 BTB_4 167 265 0.0000000
3 g6147.t1 SUPERFAMILY SSF49599 TRAF domain-like 9 142 0.0000065
4 g6147.t1 SUPERFAMILY SSF54695 POZ domain 153 263 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed