Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Speckle-type POZ protein B.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6150 g6150.t1 TSS g6150.t1 14532688 14532688
chr_2 g6150 g6150.t1 isoform g6150.t1 14532757 14533978
chr_2 g6150 g6150.t1 exon g6150.t1.exon1 14532757 14532896
chr_2 g6150 g6150.t1 cds g6150.t1.CDS1 14532757 14532896
chr_2 g6150 g6150.t1 exon g6150.t1.exon2 14532959 14533235
chr_2 g6150 g6150.t1 cds g6150.t1.CDS2 14532959 14533235
chr_2 g6150 g6150.t1 exon g6150.t1.exon3 14533301 14533776
chr_2 g6150 g6150.t1 cds g6150.t1.CDS3 14533301 14533776
chr_2 g6150 g6150.t1 exon g6150.t1.exon4 14533840 14533978
chr_2 g6150 g6150.t1 cds g6150.t1.CDS4 14533840 14533978
chr_2 g6150 g6150.t1 TTS g6150.t1 14534116 14534116

Sequences

>g6150.t1 Gene=g6150 Length=1032
ATGTCTAATAGTGATAAATATATAGCAAAAAGAAAAGTATTGTGGAGGATCAATAATGTA
ACTCTAGAAACATTGAAAAATGGTGTTAACCTTTATTCAAGCGATTTCAAAGTTTTTCTT
GGTCCAAACGTAACTGAATGGTGTCTTCAATTCAAATGTGAAAATGATTTAATTTCTTTT
AACTTGATTCAAAAATTTTTTGAAACTGATGACTTTACTGTCTTTCAAGAACTGGATATT
TATGATTTACGTAGATTCTATGTTTATAACATAGGCCTTTACAAAAAATGCGATGAGTCA
AAAGTATACATCAAAAACAAATCTGTCGGATGGAGCTGGAAAATTGAAAATTTCCGAAGA
TTCTTAGATTCTTACCGATTTTTTCCTAATAGAAATATTTTGTCATTTTCACTCAAGTTG
ATGTTAGAACAAAAGCGAAGACAAATTAAGATAGTAGAATCAAATGAATTGCTTCACAAT
ACAAAACTATTTAATTCAATCGAGAATAGTGACTTTACATGCATATCTTCAGATGGCAAA
GAATTTCCTGTTCATTCCAACATTTTAGCTGCACAGTCTCCAGTTTTCGACAAAATGTTT
AATGCTGATATGAGTGAGACTAAAACAAAGACTGTTAAAATTGATGATATTGATGGCGAT
ACATTTTTGGAATTTTTAAGATTCATATATACTGGACAAGTAGAGAATCTAAAAGATATT
GCTTCATCACTAATCTATGCTGCTGATAAATATGAAATAATCAAACTCAAGAAAATATGC
ACTGAATCACTTATGAAAAATCTATCAATCAAAAATGCTTCGGAAACACTCATTTTGGCT
GATCGCTTCAACGAAAATTTCTTGCTATATGAATGCATACAAATAATTCTTACAAAGAAT
CATAATTTAAGACCTAATAATATTCTGATAAAAAAACATCAAGACTTGGTTGAACTTAAA
TTAATAAAGAAAGTAATGGATATTGTTGAACAAGAGAGTGATAAAATTATTGAATTTTAC
AATTCACTTTAA

>g6150.t1 Gene=g6150 Length=343
MSNSDKYIAKRKVLWRINNVTLETLKNGVNLYSSDFKVFLGPNVTEWCLQFKCENDLISF
NLIQKFFETDDFTVFQELDIYDLRRFYVYNIGLYKKCDESKVYIKNKSVGWSWKIENFRR
FLDSYRFFPNRNILSFSLKLMLEQKRRQIKIVESNELLHNTKLFNSIENSDFTCISSDGK
EFPVHSNILAAQSPVFDKMFNADMSETKTKTVKIDDIDGDTFLEFLRFIYTGQVENLKDI
ASSLIYAADKYEIIKLKKICTESLMKNLSIKNASETLILADRFNENFLLYECIQIILTKN
HNLRPNNILIKKHQDLVELKLIKKVMDIVEQESDKIIEFYNSL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g6150.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 138 297 0.000
2 g6150.t1 PANTHER PTHR24413:SF213 FI01029P-RELATED 47 316 0.000
3 g6150.t1 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 47 316 0.000
1 g6150.t1 Pfam PF00651 BTB/POZ domain 162 267 0.000
7 g6150.t1 ProSiteProfiles PS50097 BTB domain profile. 170 238 16.755
5 g6150.t1 SMART SM00225 BTB_4 170 268 0.000
4 g6150.t1 SUPERFAMILY SSF54695 POZ domain 169 266 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed