General information for g6159.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin-related protein 2/3 complex subunit 2.
Parent gene
- The parent gene g6159 is located on chr_2: 14655153..14657540 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6159 | g6159.t2 | TTS | g6159.t2 | 14652136 | 14652136 |
| chr_2 | g6159 | g6159.t2 | isoform | g6159.t2 | 14653047 | 14654423 |
| chr_2 | g6159 | g6159.t2 | exon | g6159.t2.exon1 | 14653047 | 14653520 |
| chr_2 | g6159 | g6159.t2 | cds | g6159.t2.CDS1 | 14653493 | 14653520 |
| chr_2 | g6159 | g6159.t2 | exon | g6159.t2.exon2 | 14653584 | 14653693 |
| chr_2 | g6159 | g6159.t2 | cds | g6159.t2.CDS2 | 14653584 | 14653693 |
| chr_2 | g6159 | g6159.t2 | exon | g6159.t2.exon3 | 14653764 | 14653855 |
| chr_2 | g6159 | g6159.t2 | cds | g6159.t2.CDS3 | 14653764 | 14653855 |
| chr_2 | g6159 | g6159.t2 | exon | g6159.t2.exon4 | 14653918 | 14654423 |
| chr_2 | g6159 | g6159.t2 | cds | g6159.t2.CDS4 | 14653918 | 14654050 |
| chr_2 | g6159 | g6159.t2 | TSS | g6159.t2 | NA | NA |
Sequences
>g6159.t2 Gene=g6159 Length=1182
GAGTATATCATTAAAGTTTTATAAAGAGTTACAAGAACACGGAGCTGATGAACTTCTTAA
ACGAGAATATGGCGATTTGCTCATCGACCCGGAAGATGGATTTAATGTTTCTGTACTAAT
CGATTTAGAAAACATACCTGACAACTATGAAGAAATTGCTCAAAAAATCGGCCTCCTTAA
GCGCAACTGCTTTGCGAGTGTTTTTGAAAAATATTTTGACTTCCAAGAACAAGGTTTAGA
AGGAGAAAAACGTGCAGTCATTCATTATCGAAATGAAGAGACATTATATGTTGAAGCAAA
AGCAGATCGAGTTACAGTTGTATTTAGTACGATTTTCAAGGATGATGATGATGTTGTAAT
TGGGAAAGTATTTATGCAAGAATTAAGAGAAGGACGTCGTGCTTCGCACACTGCTCCACA
AGTTTTGTTTTCACATCGTGAACCACCAATGGAATTAGCTAATACAGACGCTCGAGTAGG
TGACAACATTGGATATGTTACATTTGTTCTTTTTCCACGACATACAAATAAAGAGACTCG
TGATAATACAATTAATTTAATTCACATGTTCCGAGACTATTTGCATTATCACATTAAGTG
TTCGAAAGCCTATATTCATTCAAGAATGCGTGCAAAAACATCAGATTTCTTAAAAGTTCT
CAACCGAGCTAGACCTGAACAAAAATCAACAGAAAAGAAAACAATCACGGGAAAAACTTT
CCATAGAAAAGAATGATTGATGCCCGTTGCTGATACTGATTCAGCAACAAATTAAAAGTC
CAATAATCATTTTTATTAATTAACTTCACTCACTTACACAACAAGAACCGCAACAAAGAG
AAATTCCAACAGTAAGCCTCTAAAGTGAAATGATAAACTGTTTTGTGCTCTTTAAATTAA
AGATGAAAGTAAACACACGTGAATAATTTTTTAAAATACGAAGGAAAATCTTTCGAAAAC
AAATGTAATAAATTTTTTTAACTTCACTCCTCTCTTTTTAAAAAAAAAATACTTACCTAC
CTTACCAGTAATGACCTTAATCTTACCATACTCTTATATATTCACACAAACACACACACA
CGCCCCCAATATTTGAGAAAAAATTTCTATTTCTTGTCTCAAAATGCCAAGATTTCTAAA
TATCTAAGTATATTATGAAAGTAAGTTGATTATGAAGAAAAA
>g6159.t2 Gene=g6159 Length=120
MQELREGRRASHTAPQVLFSHREPPMELANTDARVGDNIGYVTFVLFPRHTNKETRDNTI
NLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEQKSTEKKTITGKTFHRKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g6159.t2 | Gene3D | G3DSA:3.30.1460.20 | - | 1 | 119 | 2.4E-57 |
| 5 | g6159.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 120 | - |
| 6 | g6159.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 114 | - |
| 2 | g6159.t2 | PANTHER | PTHR12058 | ARP2/3 COMPLEX 34 KDA SUBUNIT | 1 | 118 | 7.6E-56 |
| 3 | g6159.t2 | PANTHER | PTHR12058:SF0 | ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 2 | 1 | 118 | 7.6E-56 |
| 1 | g6159.t2 | Pfam | PF04045 | Arp2/3 complex, 34 kD subunit p34-Arc | 1 | 103 | 9.3E-51 |
| 4 | g6159.t2 | SUPERFAMILY | SSF69645 | Arp2/3 complex subunits | 1 | 102 | 2.43E-46 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0030833 | regulation of actin filament polymerization | BP |
| GO:0005885 | Arp2/3 protein complex | CC |
| GO:0034314 | Arp2/3 complex-mediated actin nucleation | BP |
| GO:0015629 | actin cytoskeleton | CC |
| GO:0030041 | actin filament polymerization | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
