General information for g6159.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Actin-related protein 2/3 complex subunit 2.
Parent gene
- The parent gene g6159 is located on chr_2: 14655153..14657540 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6159 | g6159.t3 | TTS | g6159.t3 | 14653052 | 14653052 |
| chr_2 | g6159 | g6159.t3 | isoform | g6159.t3 | 14653493 | 14654513 |
| chr_2 | g6159 | g6159.t3 | exon | g6159.t3.exon1 | 14653493 | 14653520 |
| chr_2 | g6159 | g6159.t3 | exon | g6159.t3.exon2 | 14653584 | 14653693 |
| chr_2 | g6159 | g6159.t3 | exon | g6159.t3.exon3 | 14653764 | 14654425 |
| chr_2 | g6159 | g6159.t3 | cds | g6159.t3.CDS1 | 14653871 | 14654050 |
| chr_2 | g6159 | g6159.t3 | exon | g6159.t3.exon4 | 14654493 | 14654513 |
| chr_2 | g6159 | g6159.t3 | TSS | g6159.t3 | NA | NA |
Sequences
>g6159.t3 Gene=g6159 Length=821
AGTGATAAAACAAAAATTCGAACGAGTATATCATTAAAGTTTTATAAAGAGTTACAAGAA
CACGGAGCTGATGAACTTCTTAAACGAGAATATGGCGATTTGCTCATCGACCCGGAAGAT
GGATTTAATGTTTCTGTACTAATCGATTTAGAAAACATACCTGACAACTATGAAGAAATT
GCTCAAAAAATCGGCCTCCTTAAGCGCAACTGCTTTGCGAGTGTTTTTGAAAAATATTTT
GACTTCCAAGAACAAGGTTTAGAAGGAGAAAAACGTGCAGTCATTCATTATCGAAATGAA
GAGACATTATATGTTGAAGCAAAAGCAGATCGAGTTACAGTTGTATTTAGTACGATTTTC
AAGGATGATGATGATGTTGTAATTGGGAAAGTATTTATGCAAGAATTAAGAGAAGGACGT
CGTGCTTCGCACACTGCTCCACAAGTTTTGTTTTCACATCGTGAACCACCAATGGAATTA
GCTAATACAGACGCTCGAGTAGGTGACAACATTGGATATGTTACATTTGGTAAGATCACA
TTTAATTATGACATTAAAAGTCGAAAAATAATATAATTTTTTGTTCTTTAGTTCTTTTTC
CACGACATACAAATAAAGAGACTCGTGATAATACAATTAATTTAATTCACATGTTCCGAG
ACTATTTGCATTATCACATTAAGTGTTCGAAAGCCTATATTCATTCAAGAATGCGTGCAA
AAACATCAGATTTCTTAAAAGTTCTCAACCGAGCTAGACCTGAACAAAAATCAACAGAAA
AGAAAACAATCACGGGAAAAACTTTCCATAGAAAAGAATGA
>g6159.t3 Gene=g6159 Length=59
MQELREGRRASHTAPQVLFSHREPPMELANTDARVGDNIGYVTFGKITFNYDIKSRKII
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g6159.t3 | Gene3D | G3DSA:3.30.1460.20 | - | 1 | 58 | 4.4E-15 |
| 5 | g6159.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - |
| 2 | g6159.t3 | PANTHER | PTHR12058 | ARP2/3 COMPLEX 34 KDA SUBUNIT | 1 | 44 | 2.0E-12 |
| 3 | g6159.t3 | PANTHER | PTHR12058:SF0 | ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 2 | 1 | 44 | 2.0E-12 |
| 1 | g6159.t3 | Pfam | PF04045 | Arp2/3 complex, 34 kD subunit p34-Arc | 1 | 45 | 4.2E-12 |
| 4 | g6159.t3 | SUPERFAMILY | SSF69645 | Arp2/3 complex subunits | 1 | 44 | 1.84E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0030833 | regulation of actin filament polymerization | BP |
| GO:0005885 | Arp2/3 protein complex | CC |
| GO:0034314 | Arp2/3 complex-mediated actin nucleation | BP |
| GO:0015629 | actin cytoskeleton | CC |
| GO:0030041 | actin filament polymerization | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
