General information for g6159.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Actin-related protein 2/3 complex subunit 2.
Parent gene
- The parent gene g6159 is located on chr_2: 14655153..14657540 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6159 | g6159.t4 | TTS | g6159.t4 | 14653052 | 14653052 |
| chr_2 | g6159 | g6159.t4 | isoform | g6159.t4 | 14653493 | 14655557 |
| chr_2 | g6159 | g6159.t4 | exon | g6159.t4.exon1 | 14653493 | 14653520 |
| chr_2 | g6159 | g6159.t4 | cds | g6159.t4.CDS1 | 14653493 | 14653520 |
| chr_2 | g6159 | g6159.t4 | exon | g6159.t4.exon2 | 14653584 | 14653693 |
| chr_2 | g6159 | g6159.t4 | cds | g6159.t4.CDS2 | 14653584 | 14653693 |
| chr_2 | g6159 | g6159.t4 | exon | g6159.t4.exon3 | 14653764 | 14653855 |
| chr_2 | g6159 | g6159.t4 | cds | g6159.t4.CDS3 | 14653764 | 14653855 |
| chr_2 | g6159 | g6159.t4 | exon | g6159.t4.exon4 | 14653918 | 14654425 |
| chr_2 | g6159 | g6159.t4 | cds | g6159.t4.CDS4 | 14653918 | 14654425 |
| chr_2 | g6159 | g6159.t4 | exon | g6159.t4.exon5 | 14654513 | 14654586 |
| chr_2 | g6159 | g6159.t4 | cds | g6159.t4.CDS5 | 14654513 | 14654545 |
| chr_2 | g6159 | g6159.t4 | exon | g6159.t4.exon6 | 14655484 | 14655557 |
| chr_2 | g6159 | g6159.t4 | TSS | g6159.t4 | 14655670 | 14655670 |
Sequences
>g6159.t4 Gene=g6159 Length=886
ATGATTTTGTTAGAAATTAATAATAGAAATGTGGAAGAAACACTACTTTTAAAGTTTAAA
AATGCTTTGGCTGGTCATAAACCAGAGTCAATTGATGTCACAGTAGCAGATTTTGATGGT
GTACTTTTTCATATTTCTAACATTAAAAACGAGTATATCATTAAAGTTTTATAAAGAGTT
ACAAGAACACGGAGCTGATGAACTTCTTAAACGAGAATATGGCGATTTGCTCATCGACCC
GGAAGATGGATTTAATGTTTCTGTACTAATCGATTTAGAAAACATACCTGACAACTATGA
AGAAATTGCTCAAAAAATCGGCCTCCTTAAGCGCAACTGCTTTGCGAGTGTTTTTGAAAA
ATATTTTGACTTCCAAGAACAAGGTTTAGAAGGAGAAAAACGTGCAGTCATTCATTATCG
AAATGAAGAGACATTATATGTTGAAGCAAAAGCAGATCGAGTTACAGTTGTATTTAGTAC
GATTTTCAAGGATGATGATGATGTTGTAATTGGGAAAGTATTTATGCAAGAATTAAGAGA
AGGACGTCGTGCTTCGCACACTGCTCCACAAGTTTTGTTTTCACATCGTGAACCACCAAT
GGAATTAGCTAATACAGACGCTCGAGTAGGTGACAACATTGGATATGTTACATTTGTTCT
TTTTCCACGACATACAAATAAAGAGACTCGTGATAATACAATTAATTTAATTCACATGTT
CCGAGACTATTTGCATTATCACATTAAGTGTTCGAAAGCCTATATTCATTCAAGAATGCG
TGCAAAAACATCAGATTTCTTAAAAGTTCTCAACCGAGCTAGACCTGAACAAAAATCAAC
AGAAAAGAAAACAATCACGGGAAAAACTTTCCATAGAAAAGAATGA
>g6159.t4 Gene=g6159 Length=256
MVYFFIFLTLKTSISLKFYKELQEHGADELLKREYGDLLIDPEDGFNVSVLIDLENIPDN
YEEIAQKIGLLKRNCFASVFEKYFDFQEQGLEGEKRAVIHYRNEETLYVEAKADRVTVVF
STIFKDDDDVVIGKVFMQELREGRRASHTAPQVLFSHREPPMELANTDARVGDNIGYVTF
VLFPRHTNKETRDNTINLIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRARPEQK
STEKKTITGKTFHRKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g6159.t4 | Gene3D | G3DSA:3.30.1460.20 | - | 8 | 82 | 5.8E-30 |
| 8 | g6159.t4 | Gene3D | G3DSA:3.30.1460.20 | - | 83 | 255 | 1.4E-79 |
| 6 | g6159.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 256 | - |
| 7 | g6159.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 250 | - |
| 2 | g6159.t4 | PANTHER | PTHR12058 | ARP2/3 COMPLEX 34 KDA SUBUNIT | 12 | 254 | 1.6E-116 |
| 3 | g6159.t4 | PANTHER | PTHR12058:SF0 | ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 2 | 12 | 254 | 1.6E-116 |
| 1 | g6159.t4 | Pfam | PF04045 | Arp2/3 complex, 34 kD subunit p34-Arc | 13 | 239 | 3.3E-101 |
| 4 | g6159.t4 | SUPERFAMILY | SSF69645 | Arp2/3 complex subunits | 10 | 75 | 7.46E-20 |
| 5 | g6159.t4 | SUPERFAMILY | SSF69645 | Arp2/3 complex subunits | 76 | 238 | 2.75E-72 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
## Warning: Removed 1 row(s) containing missing values (geom_path).
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0030833 | regulation of actin filament polymerization | BP |
| GO:0005885 | Arp2/3 protein complex | CC |
| GO:0034314 | Arp2/3 complex-mediated actin nucleation | BP |
| GO:0015629 | actin cytoskeleton | CC |
| GO:0030041 | actin filament polymerization | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed