Gene loci information

Transcript annotation

  • This transcript has been annotated as Myosin light chain kinase, smooth muscle.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6165 g6165.t1 TTS g6165.t1 14678689 14678689
chr_2 g6165 g6165.t1 isoform g6165.t1 14679589 14707284
chr_2 g6165 g6165.t1 exon g6165.t1.exon1 14679589 14680683
chr_2 g6165 g6165.t1 cds g6165.t1.CDS1 14679589 14680683
chr_2 g6165 g6165.t1 exon g6165.t1.exon2 14680900 14681198
chr_2 g6165 g6165.t1 cds g6165.t1.CDS2 14680900 14681198
chr_2 g6165 g6165.t1 exon g6165.t1.exon3 14681280 14681418
chr_2 g6165 g6165.t1 cds g6165.t1.CDS3 14681280 14681418
chr_2 g6165 g6165.t1 exon g6165.t1.exon4 14681655 14681835
chr_2 g6165 g6165.t1 cds g6165.t1.CDS4 14681655 14681835
chr_2 g6165 g6165.t1 exon g6165.t1.exon5 14682741 14683244
chr_2 g6165 g6165.t1 cds g6165.t1.CDS5 14682741 14683244
chr_2 g6165 g6165.t1 exon g6165.t1.exon6 14684011 14684282
chr_2 g6165 g6165.t1 cds g6165.t1.CDS6 14684011 14684282
chr_2 g6165 g6165.t1 exon g6165.t1.exon7 14687416 14687763
chr_2 g6165 g6165.t1 cds g6165.t1.CDS7 14687416 14687763
chr_2 g6165 g6165.t1 exon g6165.t1.exon8 14691623 14691932
chr_2 g6165 g6165.t1 cds g6165.t1.CDS8 14691623 14691932
chr_2 g6165 g6165.t1 exon g6165.t1.exon9 14692300 14693284
chr_2 g6165 g6165.t1 cds g6165.t1.CDS9 14692300 14693284
chr_2 g6165 g6165.t1 exon g6165.t1.exon10 14693365 14693657
chr_2 g6165 g6165.t1 cds g6165.t1.CDS10 14693365 14693657
chr_2 g6165 g6165.t1 exon g6165.t1.exon11 14694628 14694667
chr_2 g6165 g6165.t1 cds g6165.t1.CDS11 14694628 14694667
chr_2 g6165 g6165.t1 exon g6165.t1.exon12 14696295 14696466
chr_2 g6165 g6165.t1 cds g6165.t1.CDS12 14696295 14696466
chr_2 g6165 g6165.t1 exon g6165.t1.exon13 14705555 14705687
chr_2 g6165 g6165.t1 cds g6165.t1.CDS13 14705555 14705687
chr_2 g6165 g6165.t1 exon g6165.t1.exon14 14705879 14707284
chr_2 g6165 g6165.t1 cds g6165.t1.CDS14 14705879 14707284
chr_2 g6165 g6165.t1 TSS g6165.t1 14708088 14708088

Sequences

>g6165.t1 Gene=g6165 Length=6177
ATGTGCAATAAATTGCAGTGCTATTTTGTTCCAAATAATGCAAACAATGTTGCATTTTGT
GAAACTATTTTTATCCATTCTATTATTCTCAAATTAGATCCTCCAGGTCAAATACCAAAT
GAACCAACAGTCATTGACAGCAGTGCCAATCACTTGAGCTTATCGTGGATGAAACCACAA
TGTAATGATGCAGCACCAGTTATTGGCTATCGCATCGATGCATGGCTCGTGGGCAAAGAG
GGTGATGCAACATGGAAAGAGATTGGAACATCAGCAATAGCGAGTTTTGATGTTTTCAAT
TTGAAAGCTGGTTGCGAATATCATTTTCGTGTGACGCCACGTAATCGCTATGGTTATGGA
CCATCTACACAAACCACATATCCCATCATGTTTGGCGATGTCGTAAAACTACCTGAATTT
ACTAAAATTCTTCCTGGACAATTAAAAGCTCTTGTCAACAATGATATAACACTCGAATGC
GTTGCAATGGGCTCACCACGTCCTGATATAATTTGGTATAAAGATGGCATTCGTATTGAC
TCAAATGAAAAACGTCAGATCTCGTCAATTGGACCATTATGCCGTTTAGTCATTCGAAAT
ATTACTGAGGAAGATAATGGACGATATACATGTGAGGCATCAAATAAAGAAGGAAGAGTT
TCAACTTTTGCTCGCGTACAAACTGTTTCTGATCCAAAAATATTTGAAGCTGACAATAAA
TTGAAGAGAAATATTGAAATTGATTTAGAACAATTAAAGAATGATGAAATTATGCCACAA
TTCACAATGAGATTACGTGATAGAAGAGTTCAATGCACTTATCCAGTTAGATTGACCTGT
CAAGTGCTTGCTAATCCACAAGCAATAATTGAATGGTACAAAGATGATATAAAATTAGTA
GAGGATGATCGATTTGCATTCTTGCAAGAAGATCAATTTAGTACTCTCGAAATATCACGA
ACTTATCTAGAAGATAGTGGACAATATACAGTCACAGCTCGTAATGAACTTGGATCTGTT
TCATGTCATTGTAATTTGATCGTCGACAAAGGCATTCGAGCGTATATTTCACCCGAGTTT
TTCAAACCTCTCGACATGATTTACACGTGCAATGAGAATGAAGAAATTCGTTTACAAGCA
CATGTTGAAGCTTATCCTTCAGTGGGCGTAACCTGGCATCATGATGGCATTCGCTTAAGA
CCGAGTCGACGAATTCAAGCAACTCTTGATACTGATGGTGTTGTTACATTAGTAATTACA
GAGGCAACAATCAGAGATGCTGGAACATACACTTGTGTTGCTTCAAATGCAGTTGGTCGA
GTTGAGAGCACTTGCAAAGTAAACATTATCGAAAATCCAGACAAAAAATCCCGAGTTATT
CCGTCAATTGTTGCACCTGATGCTCCCTACTCAAAAGAACCAATGTTTCTCACAAAGCCA
CGTTCAAGTGAAGCATATGAAGGCGATACAGTCATTATAATGTGTGAAGTGATCGGTGAT
CCTAAGCCAGAAGTCATTTGGTTACGAGACTTTTTAAAACCCGAATACTACAAAGACGCA
CCACATTTTCGCAGTGTCATTGGCAATGAGTCTGAGTATCGTTTAGAAATACCACAGGCT
AAAATCGAATATACTGGAACTTATTCTGTCATCGCATCAAACTGTTATGGTCAAGCGAAA
GCCATAATTTCCTTGCAAATCTACGCAAAAGATTTAGGTAGAAGCATGGATGCTGGTTCC
ATTATTCATGGTAATGTGGAAACGCTTCCTCGCATCGTAAAGCACTTAAAGGATTTACGA
TGTTGCGATGGTGATGCTGTTACACTAGAGTGCCATGTCGAGGGATTGCCAGAGCCGAAT
GTCTTTTGGGAAAAGGATGGAAAAATTTTACACGACAGATCCACTGAACATCGACAGCAA
TTTAATGGTCGTAAAGCAACTTTATCGATTCCACGTGTATTCCCAGAGGATGAAGGTCAA
TATTGTCTTGTGGCTTGCAATAACATGGGACGAGTAAAAAGCTCCGCTTGCATAATTGTC
GATGTGCCCGAAGAGAAGGAAAATTTATTGAGTCGCCAACTATCTCGCCCAATGACCTTC
TTATCACCTAATTCAACACCACGTTCGACGCCAAGATCTACACCAGCTCGAAGCATGTCA
CCACTTTCATTGCATTTATCTATGATTAGTAATAATTTGAACTTGACTTATCGTCAAAAA
CGTTATCGCTTTTCAGCACCAAAGTTTTATTCTGTGCCACATAATAGAGTATGTGAAGAA
GGTGATACTGTAAGATTTCAATGTGCCATTGCAGGTCATCCTGTTCCATGGTCAACATGG
GACAAGGATGGCATTATTGTGACTCCATCACAACGTTACATTATTCGTGAACGTGATGAC
ATGCGTTATTTGGAAATAGAGGAAGTTGGCTTTGAGGATGCTGGTCTCTATCGAATCACA
CTCGAAAATGATTATGGTCGTATTGAAGCGACAGCTCGCTTGGACATAATAAAAAGTGGT
AAAATGCATCGTCGAGGAATTCGTGCATCAAGTGCACCAAATCGTGACTCAACCAGTATG
TCACGTCGAATAATGGGTTATAGTACACGCATAGGTGGTCGAATGGCCTTAGCAACACAG
CGTGCTCAATCGATACCTGCAAAGAAAGCTACAGTTTTTCACAATGGCTATGACATTACT
GATTCAGATCGATTGACCATCACAGAGCTTGAAAATGAAATTTTACTAGAAATTGACAAT
GTAAAAACATACGATGAAGGCGAATATACATTGATGCTCGAGGATGACAATGGAATTACT
ACTACATCAACATTCGCAAAAGTGCATTATGTTGAGGATGAAGTATTCGATGAAAGAGTG
TCACCACAGATCAAAAGACACTTGAATAAAAAATTTACAAGTATTGAAGGTATTCCGCTT
GATCTGACTTTGCAAATTGACTGTAAAATTCCATTCGATTACGTGTGGCTGCGGAACGAT
GAACTGCTAGTCAATTCGGAAGATTTTATTTTCATTGACCATGGCAACGGTGTGCTAACA
CTTCGCATTCAAGATCCGTTTATTTTCGACTCAGGTAAATACAAATGTGTCATTAGCACA
CTAGCAGGCGAATGCAGTAGTGAATGCGATGTAGAAATAGAAGAGCTTGAAGGCATCAAC
ATTTTCGATGTAATACCAGAATTTATCAAAGCACCACTTCCATCAATCGCTTTACCTGGT
TGTCCTGTTTCATTTTGCACCCGCGTCACTCCTATCGATTCCAATGTTGTATGGAGTATT
TGCGGTTGTGAAATTACCAATGATACAAAAGGCTACAAGATTGAACGATTGGAGGATGGA
CTTAATGTGCTTCATGTGCTAAGTGTCGATCATAATATAAGTGGTGAAGTAAAGTGCCGC
GTCATTAGTCATAATAATCCGCAAATTTTTAACGTCTATCATACAAATTTGACTGTTTTA
CCTGTACCAATTAATGAACGATACGAACCGATTGAAACAGTTTTAGAAAATAATAGCAAT
AATAAGAGTAGTTTAGTGCACGACTTAGATCTAACATGCTTCATTACAAAACGACCAGAG
GATCGAACGGTGCTTGTTGGTGATTCGATTGAACTTAACGTGTCGTATATTGGGTATCCA
GAACCAACAGTACGCTGGATGCGAGCTGAGCGTTTAATTAAGAGTCAACCAAATACAATT
ATAATTACCAAAAATGGTCACTCAAGATTGATCATAAACAATATCACGTCAGACCAAAGT
GGAAAATATAGTGTGGAAATTATGAATGAACATAGTACTGACATTGCATCAAGTTCTGTT
GCTGTTGAGGGTGTTCCTGATGCACCGATTTCACTTAGCTACTCAAAAGGAACTGATAGA
ATTGCTGTCGCATGGTCTGGACCAGCTTATGATGGTGGCTGTATGCTAACAGGATTCATC
TTGGAAATGCAACAAGATGATGGTGAATGGAAGGAGGTAGCAACAGTTGTTGATTCACTA
GCATACACGGTCAAGAATCTTACATATGACGTGAGATATAAATTTCGAGTTCGAGCACAA
AATGTTCATGGTAATTCACCTCCAAGCAAGTCGACCGAGGAAATCATTTTGGTGAAGCAA
CAGTCAATTGACATGAGTGAGGATGAAGAGTGCGAGGAAATATATTCAAAAGAGATTCCA
TATGTGAAGGCGGGTGGTGATTTTAAAGCACGCTTCGAAATCATGGAGGAGTTAGGCAAA
GGACGCTTTGGAACTGTTCATCGTGTGATGGAACGTGAAACTGGTCTCATATTGGCAGCA
AAAATAATTAAGTGTATAAAAGCAATGGACCGTAAAAAGGTTCAAGACGAAATCAAAATA
ATGAAATCACTTCAGCATCCTAAACTCCTTCAGCTTTCAGCTTCATTTGAGACACAGAAG
GAAATCATAATGGTGATGGAATACTTAAATGGTGGTGAACTTTTTGAACGTGTTGTTGCT
GATGATTTTACATTGACTGAACGCGATTGCATTTTGTTTATGAGACAAATTTGTGAAGGC
GTCGAGTATATGCATAGTAAATATGTTGTACATTTAGATTTGAAACCTGAAAACATCATG
TGTCATACAAGGACGAGTCATCAGATAAAAATAATCGATTTCGGTCTCGCACAAAATCTC
GAGCCTGGCAAGCAAGTGCGAGTATTATTTGGCACACCCGAATTCTGTCCTCCTGAGATC
ATCAATTATGAGCCAATAGGTCTTCAATCAGACATGTGGAGCCTGGGAGTCATCTGCTAT
GTTCTACTCACAGGTTTAAGTCCATTCATGGGCGAATCGGATGTTGACACATTTTCCAAT
ATCACACGAGCTTATTACGATTTTGATGATGAAGCTTTCGATGCAATCAGTGAGGAGGCA
AAAGATTTCATAGCGGGACTTCTTGTCTATCGCAAAGAAAGTCGCATGAATGCGAAACAA
TGCCTTGAATCGAAATGGTTATCACAGCATTATGATGTTATGGGCAGCATAAAGTTATGT
ACGGATAAATTGAAAAAGTTTATCATTCGCAGAAAATGGCAGAAAACTGGAAATGCCATA
AGAGCCATCGGTAAGATGAAAAGTTTAACATTATCCGCTGCATCACGTAAAAGCGCTAGT
GGTATTTCATCAATCAATAGTCCACGGCCATCAATTTCAGGATTGTGTTTGAGTTCCAAT
CATAATTATGTCACAGACAATCGCATAACAAGTGTCGCAGAAGAAACAGTTATTGACGAT
AATAAAAGTAAGCAGCATTCAAAACTATGCAATGAACGCAGTGATTCGGGCTTTAGTGAA
TGTTCCAACTGCTCAACGCCATCAGCATCTTGCATGTGCAGTAACTCAATGAACGTAAGT
CATGACAAGTCAAAAACGATAGTTGAAGAGCGCATTAATAGCAGTAGCTCATTGGAACCA
CATGATACTACGACAAGTGATAGTCAACATCATGAAGAGGAAGAAGAAGCTCATACAAGT
TCAGACCATGACATTCATAGTGAAATTTCATCTCTTGAGTATGATTGTGATACATTGGCT
GTTTCAATTCGAGTTCCAACACGACGTGAGCTCTTGCAGAATGAACAAGGCGAACCAATG
ACTGAAATTGAACGAAGAAAAATTTCACTTGAGAATAAAGCAAAGAAAAATGTGACAAAT
AATTCACGAGCTGAATTTTCACTTGAAAAGCTCAAAAAGACGAGCAAAGTTGCACAATTG
ATGGAAAGATTTGAAGAAACAAGTCCATTAATGTCACAGACACAACAAACTGAAAATAAT
TTAAAATTTAAAACATCTGTTACCATAGAGAAAGGTTTGAAGTCAAATACTAACACAAGT
GTGAAGTCGTGTGATTTGCCAAAACATAATAATGTTAAAAATGCAACTAATCACAAAATT
TTATCATCTTCAGAAGCATCTAGAGCAGCATTATCAACGAGAACATCCGCAACGACTCCA
ACAACGACATTTAGGTTAAGCGATAGAGTTAAAGAGGCGACCGAGAGACTGTCAAAGCCA
AAACAGCAGCAACAAGCAACAACAAGTACAACAATGACAACAGATAAGACCACAAAAGCC
AGTATTCTCAAGCAAAATGCAAACTTTGTACGATCGAAGGAATTTTGGAGAAGATAG

>g6165.t1 Gene=g6165 Length=2058
MCNKLQCYFVPNNANNVAFCETIFIHSIILKLDPPGQIPNEPTVIDSSANHLSLSWMKPQ
CNDAAPVIGYRIDAWLVGKEGDATWKEIGTSAIASFDVFNLKAGCEYHFRVTPRNRYGYG
PSTQTTYPIMFGDVVKLPEFTKILPGQLKALVNNDITLECVAMGSPRPDIIWYKDGIRID
SNEKRQISSIGPLCRLVIRNITEEDNGRYTCEASNKEGRVSTFARVQTVSDPKIFEADNK
LKRNIEIDLEQLKNDEIMPQFTMRLRDRRVQCTYPVRLTCQVLANPQAIIEWYKDDIKLV
EDDRFAFLQEDQFSTLEISRTYLEDSGQYTVTARNELGSVSCHCNLIVDKGIRAYISPEF
FKPLDMIYTCNENEEIRLQAHVEAYPSVGVTWHHDGIRLRPSRRIQATLDTDGVVTLVIT
EATIRDAGTYTCVASNAVGRVESTCKVNIIENPDKKSRVIPSIVAPDAPYSKEPMFLTKP
RSSEAYEGDTVIIMCEVIGDPKPEVIWLRDFLKPEYYKDAPHFRSVIGNESEYRLEIPQA
KIEYTGTYSVIASNCYGQAKAIISLQIYAKDLGRSMDAGSIIHGNVETLPRIVKHLKDLR
CCDGDAVTLECHVEGLPEPNVFWEKDGKILHDRSTEHRQQFNGRKATLSIPRVFPEDEGQ
YCLVACNNMGRVKSSACIIVDVPEEKENLLSRQLSRPMTFLSPNSTPRSTPRSTPARSMS
PLSLHLSMISNNLNLTYRQKRYRFSAPKFYSVPHNRVCEEGDTVRFQCAIAGHPVPWSTW
DKDGIIVTPSQRYIIRERDDMRYLEIEEVGFEDAGLYRITLENDYGRIEATARLDIIKSG
KMHRRGIRASSAPNRDSTSMSRRIMGYSTRIGGRMALATQRAQSIPAKKATVFHNGYDIT
DSDRLTITELENEILLEIDNVKTYDEGEYTLMLEDDNGITTTSTFAKVHYVEDEVFDERV
SPQIKRHLNKKFTSIEGIPLDLTLQIDCKIPFDYVWLRNDELLVNSEDFIFIDHGNGVLT
LRIQDPFIFDSGKYKCVISTLAGECSSECDVEIEELEGINIFDVIPEFIKAPLPSIALPG
CPVSFCTRVTPIDSNVVWSICGCEITNDTKGYKIERLEDGLNVLHVLSVDHNISGEVKCR
VISHNNPQIFNVYHTNLTVLPVPINERYEPIETVLENNSNNKSSLVHDLDLTCFITKRPE
DRTVLVGDSIELNVSYIGYPEPTVRWMRAERLIKSQPNTIIITKNGHSRLIINNITSDQS
GKYSVEIMNEHSTDIASSSVAVEGVPDAPISLSYSKGTDRIAVAWSGPAYDGGCMLTGFI
LEMQQDDGEWKEVATVVDSLAYTVKNLTYDVRYKFRVRAQNVHGNSPPSKSTEEIILVKQ
QSIDMSEDEECEEIYSKEIPYVKAGGDFKARFEIMEELGKGRFGTVHRVMERETGLILAA
KIIKCIKAMDRKKVQDEIKIMKSLQHPKLLQLSASFETQKEIIMVMEYLNGGELFERVVA
DDFTLTERDCILFMRQICEGVEYMHSKYVVHLDLKPENIMCHTRTSHQIKIIDFGLAQNL
EPGKQVRVLFGTPEFCPPEIINYEPIGLQSDMWSLGVICYVLLTGLSPFMGESDVDTFSN
ITRAYYDFDDEAFDAISEEAKDFIAGLLVYRKESRMNAKQCLESKWLSQHYDVMGSIKLC
TDKLKKFIIRRKWQKTGNAIRAIGKMKSLTLSAASRKSASGISSINSPRPSISGLCLSSN
HNYVTDNRITSVAEETVIDDNKSKQHSKLCNERSDSGFSECSNCSTPSASCMCSNSMNVS
HDKSKTIVEERINSSSSLEPHDTTTSDSQHHEEEEEAHTSSDHDIHSEISSLEYDCDTLA
VSIRVPTRRELLQNEQGEPMTEIERRKISLENKAKKNVTNNSRAEFSLEKLKKTSKVAQL
MERFEETSPLMSQTQQTENNLKFKTSVTIEKGLKSNTNTSVKSCDLPKHNNVKNATNHKI
LSSSEASRAALSTRTSATTPTTTFRLSDRVKEATERLSKPKQQQQATTSTTMTTDKTTKA
SILKQNANFVRSKEFWRR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
53 g6165.t1 CDD cd00063 FN3 39 126 4.41975E-14
46 g6165.t1 CDD cd00096 Ig 156 225 2.51185E-19
47 g6165.t1 CDD cd00096 Ig 276 345 5.9963E-15
45 g6165.t1 CDD cd00096 Ig 376 446 2.0823E-11
48 g6165.t1 CDD cd00096 Ig 607 676 2.64245E-14
49 g6165.t1 CDD cd00096 Ig 984 1049 5.92759E-6
50 g6165.t1 CDD cd00096 Ig 1210 1277 3.782E-9
52 g6165.t1 CDD cd00063 FN3 1286 1373 1.84684E-15
51 g6165.t1 CDD cd14103 STKc_MLCK 1418 1667 1.52728E-161
44 g6165.t1 Coils Coil Coil 235 255 -
36 g6165.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 27 132 9.5E-16
34 g6165.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 135 237 1.6E-21
40 g6165.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 255 350 1.1E-21
38 g6165.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 353 457 1.5E-20
39 g6165.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 467 570 7.3E-16
37 g6165.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 585 689 6.8E-19
32 g6165.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 743 845 1.1E-18
35 g6165.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 870 957 8.3E-7
33 g6165.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 958 1058 2.4E-10
31 g6165.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1192 1286 2.5E-17
41 g6165.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 1287 1384 3.4E-20
42 g6165.t1 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 1385 1490 1.5E-27
43 g6165.t1 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 1491 1722 1.6E-58
77 g6165.t1 MobiDBLite mobidb-lite consensus disorder prediction 1811 1846 -
81 g6165.t1 MobiDBLite mobidb-lite consensus disorder prediction 1824 1846 -
78 g6165.t1 MobiDBLite mobidb-lite consensus disorder prediction 1984 2036 -
80 g6165.t1 MobiDBLite mobidb-lite consensus disorder prediction 1984 2007 -
79 g6165.t1 MobiDBLite mobidb-lite consensus disorder prediction 2019 2036 -
19 g6165.t1 PANTHER PTHR47633 - 137 233 1.5E-213
16 g6165.t1 PANTHER PTHR47633 - 242 351 1.5E-213
18 g6165.t1 PANTHER PTHR47633 - 356 458 1.5E-213
12 g6165.t1 PANTHER PTHR47633 - 468 567 1.5E-213
14 g6165.t1 PANTHER PTHR47633 - 585 689 1.5E-213
17 g6165.t1 PANTHER PTHR47633 - 726 947 1.5E-213
13 g6165.t1 PANTHER PTHR47633 - 1190 1444 1.5E-213
15 g6165.t1 PANTHER PTHR47633 - 1413 2034 1.5E-213
10 g6165.t1 Pfam PF00041 Fibronectin type III domain 39 122 4.9E-11
8 g6165.t1 Pfam PF07679 Immunoglobulin I-set domain 138 227 6.1E-16
5 g6165.t1 Pfam PF07679 Immunoglobulin I-set domain 259 348 4.6E-18
7 g6165.t1 Pfam PF07679 Immunoglobulin I-set domain 369 449 3.6E-16
2 g6165.t1 Pfam PF07679 Immunoglobulin I-set domain 474 567 1.4E-13
6 g6165.t1 Pfam PF07679 Immunoglobulin I-set domain 590 678 1.3E-16
1 g6165.t1 Pfam PF07679 Immunoglobulin I-set domain 747 836 1.6E-16
4 g6165.t1 Pfam PF07679 Immunoglobulin I-set domain 962 1053 5.6E-6
3 g6165.t1 Pfam PF07679 Immunoglobulin I-set domain 1195 1282 3.6E-14
11 g6165.t1 Pfam PF00041 Fibronectin type III domain 1296 1369 2.9E-10
9 g6165.t1 Pfam PF00069 Protein kinase domain 1412 1667 3.3E-71
76 g6165.t1 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 1418 1441 -
75 g6165.t1 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 1529 1541 -
83 g6165.t1 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 38 134 18.13
87 g6165.t1 ProSiteProfiles PS50835 Ig-like domain profile. 138 230 13.693
89 g6165.t1 ProSiteProfiles PS50835 Ig-like domain profile. 259 341 9.392
85 g6165.t1 ProSiteProfiles PS50835 Ig-like domain profile. 358 448 10.39
90 g6165.t1 ProSiteProfiles PS50835 Ig-like domain profile. 474 568 10.19
86 g6165.t1 ProSiteProfiles PS50835 Ig-like domain profile. 590 679 11.751
84 g6165.t1 ProSiteProfiles PS50835 Ig-like domain profile. 747 835 9.464
88 g6165.t1 ProSiteProfiles PS50835 Ig-like domain profile. 1170 1281 8.702
82 g6165.t1 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 1285 1381 18.454
91 g6165.t1 ProSiteProfiles PS50011 Protein kinase domain profile. 1412 1667 46.647
65 g6165.t1 SMART SM00060 FN3_2 35 120 3.3E-11
58 g6165.t1 SMART SM00409 IG_3c 145 229 4.2E-9
70 g6165.t1 SMART SM00408 igc2_5 151 218 7.5E-16
61 g6165.t1 SMART SM00409 IG_3c 265 349 8.8E-5
68 g6165.t1 SMART SM00408 igc2_5 271 338 0.0018
54 g6165.t1 SMART SM00409 IG_3c 365 450 8.9E-6
72 g6165.t1 SMART SM00408 igc2_5 371 439 9.7E-9
59 g6165.t1 SMART SM00409 IG_3c 480 568 3.3E-7
73 g6165.t1 SMART SM00408 igc2_5 486 557 0.15
60 g6165.t1 SMART SM00409 IG_3c 596 681 0.0029
67 g6165.t1 SMART SM00408 igc2_5 602 670 1.5E-10
63 g6165.t1 SMART SM00409 IG_3c 753 837 1.5E-6
69 g6165.t1 SMART SM00408 igc2_5 759 826 0.0021
56 g6165.t1 SMART SM00409 IG_3c 880 949 69.0
62 g6165.t1 SMART SM00409 IG_3c 973 1054 25.0
74 g6165.t1 SMART SM00408 igc2_5 979 1043 1.6
57 g6165.t1 SMART SM00409 IG_3c 1072 1160 150.0
55 g6165.t1 SMART SM00409 IG_3c 1199 1283 5.4E-5
71 g6165.t1 SMART SM00408 igc2_5 1205 1272 0.048
64 g6165.t1 SMART SM00060 FN3_2 1286 1366 5.6E-7
66 g6165.t1 SMART SM00220 serkin_6 1412 1667 1.5E-87
20 g6165.t1 SUPERFAMILY SSF49265 Fibronectin type III 34 1373 8.74E-31
28 g6165.t1 SUPERFAMILY SSF48726 Immunoglobulin 136 233 7.34E-23
23 g6165.t1 SUPERFAMILY SSF48726 Immunoglobulin 259 348 1.67E-21
26 g6165.t1 SUPERFAMILY SSF48726 Immunoglobulin 358 454 4.66E-20
22 g6165.t1 SUPERFAMILY SSF48726 Immunoglobulin 474 570 3.94E-16
21 g6165.t1 SUPERFAMILY SSF48726 Immunoglobulin 587 680 1.3E-19
27 g6165.t1 SUPERFAMILY SSF48726 Immunoglobulin 747 838 7.38E-20
25 g6165.t1 SUPERFAMILY SSF48726 Immunoglobulin 884 951 5.65E-7
29 g6165.t1 SUPERFAMILY SSF48726 Immunoglobulin 971 1058 4.9E-11
24 g6165.t1 SUPERFAMILY SSF48726 Immunoglobulin 1195 1290 3.22E-19
30 g6165.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 1397 1676 6.15E-81

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0005515 protein binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values