General information for g6172.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Aldo-keto reductase family 1 member B10.
Parent gene
- The parent gene g6172 is located on chr_2: 14786169..14787954 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6172 | g6172.t2 | TTS | g6172.t2 | 14786057 | 14786057 |
| chr_2 | g6172 | g6172.t2 | isoform | g6172.t2 | 14786169 | 14787954 |
| chr_2 | g6172 | g6172.t2 | exon | g6172.t2.exon1 | 14786169 | 14786211 |
| chr_2 | g6172 | g6172.t2 | exon | g6172.t2.exon2 | 14786286 | 14786532 |
| chr_2 | g6172 | g6172.t2 | exon | g6172.t2.exon3 | 14786607 | 14787281 |
| chr_2 | g6172 | g6172.t2 | cds | g6172.t2.CDS1 | 14786808 | 14787281 |
| chr_2 | g6172 | g6172.t2 | exon | g6172.t2.exon4 | 14787886 | 14787954 |
| chr_2 | g6172 | g6172.t2 | cds | g6172.t2.CDS2 | 14787886 | 14787954 |
| chr_2 | g6172 | g6172.t2 | TSS | g6172.t2 | NA | NA |
Sequences
>g6172.t2 Gene=g6172 Length=1034
ATGTCTGTACCTTCTGTTGAGTTATCAAATGGCTTTAAAATTCCTATGTTAGGACTTGGA
ACTTGGTTGTCACCTGTAGGTCAAGTTGAACAAGCTGTAAAAGATGCGATTGATGCAGGA
TATCGCCACATTGATGGAGCTTATGTTTATCGCAATGAAGCTGAAGTTGGTAATGCAATA
GCTGCAAAGATTGATGAAGGAATTGTGACTCGTGAGGAGCTTTTTGTGACCTCAAAATTA
TGGAATATTTTTCATGATCCAAAACATGTTAGAGGAGCATTAGAGAAAACTTTGCAGGAT
TTGAAACTGAATTATATTGATCTTTATTTGATTCATTTTCCTATGGGCTTGAAATTCATA
GATAGTGAGACATTGAGTCCAAAAACTGAAAATGGTGAATGGATGATTGATACCATTGAT
CATGCTGAAACTTGGAAAGCAATGGAAGAACTTGTTGATGAAGGACTTGTAATATCTATT
GGATTGTCGAATTTCAATTCTAAGTTTGTACTTTTTGAAAGAATTTCTACATTAATTTTT
TGAAATATTGAAAAAGATAAATTTTTTAAATATTTTCGTACAGGCAAATTGAATACATTT
TGAGCAATGCAAATATTAAACCAGTAATGTTGCAGTGTGAATGCCATCCATACTTGAATC
AGAAGAAACTAATCGAATTTTGTCATGAAAAAGGCATTGCATTTACTGCTTATTCGCCAT
TGGGTTCAAATTCGCGTCCATCTGCAAAACCTGATGATCCGCAACTAATGGAAGATCCAA
CAATTCTACAGATCAGTGAAAAACATTCAAAAACTCCAGCTCAAATTTTATTACGCTGGC
AAATTCAACGCGGTGTTATTGCGATCCCAAAATCAGTCACAAAATCTCGAATCATCAGCA
ATTTTGATATTTTCGATTTCGAACTTGATGAAGAAGACATGGAAAATATTGATGGATTGA
ACCGTAATGAAAGATTGATTGCATTTAAAGAACATCACCCAAACTATCCTTTTGGATCGA
ACGTAGAATTTTAA
>g6172.t2 Gene=g6172 Length=180
MSVPSVELSNGFKIPMLGLGTWLSPVGQVEQAVKDAIDAGYRHIDGAYVYRNEAEVGNAI
AAKIDEGIVTREELFVTSKLWNIFHDPKHVRGALEKTLQDLKLNYIDLYLIHFPMGLKFI
DSETLSPKTENGEWMIDTIDHAETWKAMEELVDEGLVISIGLSNFNSKFVLFERISTLIF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g6172.t2 | Gene3D | G3DSA:3.20.20.100 | - | 1 | 175 | 8.9E-69 |
| 2 | g6172.t2 | PANTHER | PTHR11732:SF482 | ZGC:56622 | 5 | 168 | 1.7E-63 |
| 3 | g6172.t2 | PANTHER | PTHR11732 | ALDO/KETO REDUCTASE | 5 | 168 | 1.7E-63 |
| 4 | g6172.t2 | PRINTS | PR00069 | Aldo-keto reductase signature | 36 | 60 | 5.6E-28 |
| 5 | g6172.t2 | PRINTS | PR00069 | Aldo-keto reductase signature | 96 | 114 | 5.6E-28 |
| 6 | g6172.t2 | PRINTS | PR00069 | Aldo-keto reductase signature | 148 | 165 | 5.6E-28 |
| 1 | g6172.t2 | Pfam | PF00248 | Aldo/keto reductase family | 17 | 167 | 6.8E-26 |
| 8 | g6172.t2 | ProSitePatterns | PS00798 | Aldo/keto reductase family signature 1. | 40 | 57 | - |
| 7 | g6172.t2 | SUPERFAMILY | SSF51430 | NAD(P)-linked oxidoreductase | 6 | 169 | 1.57E-55 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0047834 | D-threo-aldose 1-dehydrogenase activity | MF |
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed