Gene loci information

Transcript annotation

  • This transcript has been annotated as Hyaluronidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6174 g6174.t1 isoform g6174.t1 14884240 14897963
chr_2 g6174 g6174.t1 exon g6174.t1.exon1 14884240 14884301
chr_2 g6174 g6174.t1 cds g6174.t1.CDS1 14884240 14884301
chr_2 g6174 g6174.t1 exon g6174.t1.exon2 14885093 14885206
chr_2 g6174 g6174.t1 cds g6174.t1.CDS2 14885093 14885206
chr_2 g6174 g6174.t1 exon g6174.t1.exon3 14896750 14897220
chr_2 g6174 g6174.t1 cds g6174.t1.CDS3 14896750 14897220
chr_2 g6174 g6174.t1 exon g6174.t1.exon4 14897348 14897431
chr_2 g6174 g6174.t1 cds g6174.t1.CDS4 14897348 14897431
chr_2 g6174 g6174.t1 exon g6174.t1.exon5 14897598 14897706
chr_2 g6174 g6174.t1 cds g6174.t1.CDS5 14897598 14897706
chr_2 g6174 g6174.t1 exon g6174.t1.exon6 14897772 14897963
chr_2 g6174 g6174.t1 cds g6174.t1.CDS6 14897772 14897963
chr_2 g6174 g6174.t1 TTS g6174.t1 14898088 14898088
chr_2 g6174 g6174.t1 TSS g6174.t1 NA NA

Sequences

>g6174.t1 Gene=g6174 Length=1032
ATGAGGATAAGTTTAATTGGAAGCAGTTTATTGTTTTTGTTGGTCAAATTGGCTATAGTT
AGCTCAATGGAAGTCTATTGGAACATTCCGTCTTTCATGTGCAAGAAGCATAAAATTCAT
TTTGACAATACTGTTACATCTTACGGTATACGACAAAATCGTGATGATAATTTTCAAGGT
AATGAAATCACCATATTGTATGATCCGGGCGCTTTCCCGGCACTAGGAACGAATGGTGAA
CGTAGAAATGGTGGTGTACCACAAGAAGGAAATCTAACTTTGCATTTAAACCAATATAAA
GCGCACATCGATGAACTCGTGCCAGATGTTAACAATAATGGCTTAATAATTATCGATTTT
GAATCATGGAGGCCCATTTTTAGACAAAATTTTGGCGTACTAAAAGACTATAAAGATTTA
TCGTATCGCATTGAACGTGAGAGGCACCCATTTTGGACGCGTTCACGTCAAGAAGCGGAG
GCTCAGAGTCGTTTTGAAGCAGCTGGCAAACGATTCGTTGAAGAGACATTGGCGCTGTCA
AAAAGCTTACGTCCAAGAGCACAATGGGGCTATTATGCCTTTCCTTATTGCTTCAATAAG
GGCTTAAATGCTGAGTGTCCTAGAGAAGTTCGAGATGAGAATGATAAAATGGAATGGATG
TTTTCTCATTCACATTTAGTATTGCCATCGGTTTACTTGCACGAACAGAAAAGCCCTGCT
GAGAGGCAGAGCATGGTCAAGGCACGTATCAAAGAAGCACAGAGAGTATCTAAAAATTCA
AAAAAAGTTTATGTCTACATACAATATGTTTATCCTGATTCAAAGAAATTGCTCTCCGAA
AGTGATTTAATCATGGTATTTCAAAATGCTAAAAATCAAGGAGCAAAGGGAGTCATACTT
TGGGGATCATCAAACGATTTAAAGACAAGAAAAGATTGCGAAATGCTACAAACTTATTTA
GATACAACAATGGGTCCCATTTCACAATCATTTAGTTCGAAACGTATTTTTGTTGATATG
GTTGCTGGTTAA

>g6174.t1 Gene=g6174 Length=343
MRISLIGSSLLFLLVKLAIVSSMEVYWNIPSFMCKKHKIHFDNTVTSYGIRQNRDDNFQG
NEITILYDPGAFPALGTNGERRNGGVPQEGNLTLHLNQYKAHIDELVPDVNNNGLIIIDF
ESWRPIFRQNFGVLKDYKDLSYRIERERHPFWTRSRQEAEAQSRFEAAGKRFVEETLALS
KSLRPRAQWGYYAFPYCFNKGLNAECPREVRDENDKMEWMFSHSHLVLPSVYLHEQKSPA
ERQSMVKARIKEAQRVSKNSKKVYVYIQYVYPDSKKLLSESDLIMVFQNAKNQGAKGVIL
WGSSNDLKTRKDCEMLQTYLDTTMGPISQSFSSKRIFVDMVAG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g6174.t1 Gene3D G3DSA:3.20.20.70 Aldolase class I 17 337 3.0E-112
2 g6174.t1 PANTHER PTHR11769:SF35 HYALURONIDASE 22 332 8.4E-99
3 g6174.t1 PANTHER PTHR11769 HYALURONIDASE 22 332 8.4E-99
22 g6174.t1 PIRSF PIRSF038193 Hyaluronidase 16 331 2.0E-60
8 g6174.t1 PRINTS PR00846 Glycosyl hydrolase family 56 signature 23 35 2.3E-27
9 g6174.t1 PRINTS PR00847 Bee venom hyaluronidase signature 32 45 3.8E-14
13 g6174.t1 PRINTS PR00847 Bee venom hyaluronidase signature 63 76 3.8E-14
5 g6174.t1 PRINTS PR00846 Glycosyl hydrolase family 56 signature 82 96 2.3E-27
7 g6174.t1 PRINTS PR00846 Glycosyl hydrolase family 56 signature 114 131 2.3E-27
11 g6174.t1 PRINTS PR00847 Bee venom hyaluronidase signature 146 161 3.8E-14
6 g6174.t1 PRINTS PR00846 Glycosyl hydrolase family 56 signature 172 197 2.3E-27
10 g6174.t1 PRINTS PR00847 Bee venom hyaluronidase signature 234 250 3.8E-14
12 g6174.t1 PRINTS PR00847 Bee venom hyaluronidase signature 303 313 3.8E-14
4 g6174.t1 PRINTS PR00846 Glycosyl hydrolase family 56 signature 313 326 2.3E-27
1 g6174.t1 Pfam PF01630 Hyaluronidase 22 327 4.7E-97
18 g6174.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 22 -
19 g6174.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
20 g6174.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 14 -
21 g6174.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 22 -
17 g6174.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 23 343 -
14 g6174.t1 SUPERFAMILY SSF51445 (Trans)glycosidases 25 327 6.11E-101
15 g6174.t1 SignalP_EUK SignalP-noTM SignalP-noTM 1 22 -
23 g6174.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 27 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006952 defense response BP
GO:0005975 carbohydrate metabolic process BP
GO:0003824 catalytic activity MF
GO:0004415 hyalurononglucosaminidase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values