General information for g6180.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 26S proteasome non-ATPase regulatory subunit 8.
Parent gene
- The parent gene g6180 is located on chr_2: 15016569..15017433 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6180 | g6180.t2 | isoform | g6180.t2 | 15012076 | 15017433 |
| chr_2 | g6180 | g6180.t2 | exon | g6180.t2.exon1 | 15012076 | 15012196 |
| chr_2 | g6180 | g6180.t2 | exon | g6180.t2.exon2 | 15016508 | 15017261 |
| chr_2 | g6180 | g6180.t2 | cds | g6180.t2.CDS1 | 15016569 | 15017261 |
| chr_2 | g6180 | g6180.t2 | exon | g6180.t2.exon3 | 15017326 | 15017433 |
| chr_2 | g6180 | g6180.t2 | cds | g6180.t2.CDS2 | 15017326 | 15017433 |
| chr_2 | g6180 | g6180.t2 | TSS | g6180.t2 | 15017509 | 15017509 |
| chr_2 | g6180 | g6180.t2 | TTS | g6180.t2 | NA | NA |
Sequences
>g6180.t2 Gene=g6180 Length=983
ATGGCTTCATTAGGAAATGTCAATCAATTATTTAAAGAACTCAAAACAGAGTTTTCTAAA
GGTGCGCGTGATTTAAAAAAGTGTGGAAATTTGCTGGAACAATTAAAAATCAGTCTTATT
AAAATTTCATACATACCTACATCAGACTCGCAAGCTTCTCAACAGGAACTCGTTATTGCC
CGTGATGTTTTGGAAATTGGAGCAGAATATAGTGTAGCTATTAAAGACATCCAGTCATTC
GAGAGATACATTTCACAATTAAAATGTTACTATTATGACTACAAGAACTTAATTCCTGAA
TCGCAGAATAAGTATAAGCTGCTTGGATTGAATCTTTTATTCCTACTCTCGCAAAATCGT
GTGGCTGAATTTCATACTGAATTAGAATTGCTTCCTAGTGAAATCATCCCTTCAAATAAG
TTTGTTCAATATCCTTTATCGCTTGAGCAATGTTTAATGGAAGGACGTTATAATAAACTT
TTCAAAGCAAAAGGTGATGCACCAGCAGAATGCTACAATTTCTTCGTTGATATTCTATTG
GATACTGTTCGAAATGAAATCGGAGCCTGTCTTGAACGAGCATACGAGAAAATTTCTATT
CCCGAAGCTGGCAAACGTTTAAATCTTTCATCAAAAGATGAAGTAGTTAAATTTGCTCAA
AAAAGGAATTGGAAACTTGGAGCTGATAATTTCTATCATTTTATCGATGAGAACATGCCG
AAAACTAAAGAACCTATTCCTTCAGTTGAATTAGCTGAAATGGCAATTACATATGCTCGA
GAACTTGAAATGATTGTCTAAACAATTATTCATTAATCTTTTTTCATAATTAATAAAATA
TTCATATTTGAGAAGTACTTTGAAAAATGTTTGAAAAATATTGCAAAAAATGAATTCGAA
GAAGGAAGATTTTCATTCATTTTAAACTCAATTGTCAAAATGCTTTTACAATCTACTTAG
TATGATGCAATTAAGAATATTTT
>g6180.t2 Gene=g6180 Length=266
MASLGNVNQLFKELKTEFSKGARDLKKCGNLLEQLKISLIKISYIPTSDSQASQQELVIA
RDVLEIGAEYSVAIKDIQSFERYISQLKCYYYDYKNLIPESQNKYKLLGLNLLFLLSQNR
VAEFHTELELLPSEIIPSNKFVQYPLSLEQCLMEGRYNKLFKAKGDAPAECYNFFVDILL
DTVRNEIGACLERAYEKISIPEAGKRLNLSSKDEVVKFAQKRNWKLGADNFYHFIDENMP
KTKEPIPSVELAEMAITYARELEMIV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g6180.t2 | Gene3D | G3DSA:1.25.40.990 | - | 4 | 236 | 0.000 |
| 2 | g6180.t2 | PANTHER | PTHR12387:SF1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8 | 6 | 266 | 0.000 |
| 3 | g6180.t2 | PANTHER | PTHR12387 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8 | 6 | 266 | 0.000 |
| 1 | g6180.t2 | Pfam | PF10075 | CSN8/PSMD8/EIF3K family | 103 | 239 | 0.000 |
| 5 | g6180.t2 | ProSiteProfiles | PS50250 | PCI domain profile. | 78 | 247 | 19.506 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006508 | proteolysis | BP |
| GO:0005838 | proteasome regulatory particle | CC |
KEGG
Orthology
- This transcript has been annotated with K03031 (26S proteasome regulatory subunit N12)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
