General information for g6180.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 26S proteasome non-ATPase regulatory subunit 8.
Parent gene
- The parent gene g6180 is located on chr_2: 15016569..15017433 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6180 | g6180.t3 | isoform | g6180.t3 | 15016508 | 15017251 |
| chr_2 | g6180 | g6180.t3 | TTS | g6180.t3 | 15016508 | 15016508 |
| chr_2 | g6180 | g6180.t3 | exon | g6180.t3.exon1 | 15016508 | 15017251 |
| chr_2 | g6180 | g6180.t3 | cds | g6180.t3.CDS1 | 15016569 | 15016913 |
| chr_2 | g6180 | g6180.t3 | TSS | g6180.t3 | 15017509 | 15017509 |
Sequences
>g6180.t3 Gene=g6180 Length=744
TTAAAATTTCATACATACCTACATCAGACTCGCAAGCTTCTCAACAGGAACTCGTTATTG
CCCGTGATGTTTTGGAAATTGGAGCAGAATATAGTGTAGCTATTAAAGACATCCAGTCAT
TCGAGAGATACATTTCACAATTAAAATGTTACTATTATGACTACAAGAACTTAATTCCTG
AATCGCAGAATAAGTATAAGCTGCTTGGATTGAATCTTTTATTCCTACTCTCGCAAAATC
GTGTGGCTGAATTTCATACTGAATTAGAATTGCTTCCTAGTGAAATCATCCCTTCAAATA
AGTTTGTTCAATATCCTTTATCGCTTGAGCAATGTTTAATGGAAGGACGTTATAATAAAC
TTTTCAAAGCAAAAGGTGATGCACCAGCAGAATGCTACAATTTCTTCGTTGATATTCTAT
TGGATACTGTTCGAAATGAAATCGGAGCCTGTCTTGAACGAGCATACGAGAAAATTTCTA
TTCCCGAAGCTGGCAAACGTTTAAATCTTTCATCAAAAGATGAAGTAGTTAAATTTGCTC
AAAAAAGGAATTGGAAACTTGGAGCTGATAATTTCTATCATTTTATCGATGAGAACATGC
CGAAAACTAAAGAACCTATTCCTTCAGTTGAATTAGCTGAAATGGCAATTACATATGCTC
GAGAACTTGAAATGATTGTCTAAACAATTATTCATTAATCTTTTTTCATAATTAATAAAA
TATTCATATTTGAGAAGTACTTTG
>g6180.t3 Gene=g6180 Length=114
MEGRYNKLFKAKGDAPAECYNFFVDILLDTVRNEIGACLERAYEKISIPEAGKRLNLSSK
DEVVKFAQKRNWKLGADNFYHFIDENMPKTKEPIPSVELAEMAITYARELEMIV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g6180.t3 | Gene3D | G3DSA:1.25.40.990 | - | 1 | 84 | 0 |
| 2 | g6180.t3 | PANTHER | PTHR12387:SF1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8 | 1 | 114 | 0 |
| 3 | g6180.t3 | PANTHER | PTHR12387 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8 | 1 | 114 | 0 |
| 1 | g6180.t3 | Pfam | PF10075 | CSN8/PSMD8/EIF3K family | 1 | 87 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006508 | proteolysis | BP |
| GO:0005838 | proteasome regulatory particle | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
