General information for g6184.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Sorting nexin-14.
Parent gene
- The parent gene g6184 is located on chr_2: 15038302..15040148 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6184 | g6184.t1 | TSS | g6184.t1 | 15036107 | 15036107 |
| chr_2 | g6184 | g6184.t1 | isoform | g6184.t1 | 15036165 | 15038302 |
| chr_2 | g6184 | g6184.t1 | exon | g6184.t1.exon1 | 15036165 | 15036262 |
| chr_2 | g6184 | g6184.t1 | cds | g6184.t1.CDS1 | 15036165 | 15036262 |
| chr_2 | g6184 | g6184.t1 | exon | g6184.t1.exon2 | 15036322 | 15038302 |
| chr_2 | g6184 | g6184.t1 | cds | g6184.t1.CDS2 | 15036322 | 15038302 |
| chr_2 | g6184 | g6184.t1 | TTS | g6184.t1 | 15038357 | 15038357 |
Sequences
>g6184.t1 Gene=g6184 Length=2079
ATGACCATTTTACAGCTTAGTTTAATATTTAAAGATTCAATAGCTTTAAAAACTTTTATC
TTAGCAGTGATATTAATTACATTATCATGTATTTATAGTCTCTCATTGGGAATATATTTC
GGACTTTTCTTCATCATATCATTGACCTTTGTAGTATTTTTTAATCAAAGTTCAACAACA
AGAAATCATCTGCAAGAGATAGTCGAATCATTTTTAAAATCAGACAATGAAACAAAAAGT
TCATCAAATGATGACAAAATTTTCTTAGCAAAAGGACTTGATGAAACTTTGGAAAGATTT
TTCACACGTCTTTTGGACAATGTTTTTAAAAGTTGGTGGTCGAATGTTTCAAGTGATGAA
ACTTTTCTGTATACATTGAAGTTAGAATTGACACGTGCATTAAGGAAACTCGCATTAAGA
TATAAAAATGTTGATTATCCAGTTTTAATTTCAACAAAACTTTTACCAATTGTTTACTCA
CATTTCTCACAAATTGAACATTTAATGAAAACTAAAGAGACCAGAGAGCAGCAAATTAAA
TCATTTCTTGAAATTCAATCACCTCATCCTGCAACATTAAATCGAAAGGCAGAATTGCAA
TATCTTCGATCACTTTCTGAAAATCTTATGCCTTATTTATTTTCTAAGAATAATTACAAA
TGTCGTGCTGCATACAATATTGTTCGAGAACTTTTAACTAATTGGGTTTTTCTTCAAATT
ACTGATTTGATAGCAGAACCTGATATTATAAATATGCTTGTGATTTTAGCGACAAATAAG
AGCACAACAGCAATCAAAGAATTAAATGATAAAACTCAAGTAGAATTGCTTGCTAATTTT
ATCAAAATTAATGAAAACAAAGCAATTGGAAGTGATCAAAGAGTTGACAACAATTTCTTC
AAAGACCAAGAAAAATTGTACAATTTCATGCAATATTTAAAGAGTCAAAATTGTAATGAT
GTTGAAATTTTAAAATTCGTGCTTGATGTTGAACATTTAAATGCAGAATTAGAAAAATCG
AGTGTAATTTTAGATCCAGTTAAACTTTCAAGCTTGCAACAAACTTCTGAAAAATTACTC
ACACTTTATCGTGATAATTTATTTAAAGGAGAAGAAAATGAAAAGCCCAGTGATTTAATA
AAATGTTATGACCATGCAAAAAAGCATCTTGAGTACAAATGGAAATTTGATTTTTATAAG
AGTGGAGACTATTATAAATATATTTATGGTGATAGAGAAATTTATAACACAAGCAAAGAA
GAAAAGGAAGAGCAAATTACAGAAACAATCTCAACACAAAAATTGTCAGCTAAAATTAAA
AATGCAATGACTATGAAGATTGCAGTTGATGGAATTGAAGATGACATTCAGGTATACGAT
GCAATAGATGCTGGGAGTATTAGTCCATTTCATTACTACAATTCTATGGCAGTAAAATTA
AGAAAAGAAAGAGGGCAAGATTTAGATAATTTTATGGTAACATTTTTTAATTCGATTGAG
CAAGAAGGTGATATTGGTGAAGATATTGCATCAAAAACACATTCAAAATCAGAAAAGGAG
AAGCAGCATGATAAAATTAAACTAGGCAATATTGAGCTATATAAAAATTTATTTAACACT
ACAGGACAATCTAATGCGCAGCTAATGACAATTTCATATGTTAAAAATCCCACACAAAGT
TTAATTTATTTCCTTGCTAAAATTGTAAAATTTCATGAAACATTTCTCAGGTTAATTGTT
GGAATTTTAAATTTCTTTCCACATTCCGATAAACTTGTGTTGATGTCTATAAGGAAAATT
TGTGAAAAACTTGTAAATCAAGCAATTTTATCTCATCTCATTTGTGAATTGGAAGAAAAA
CTTTTTGACTCCAAACCAACTCATCGTTCAACTCAAGAAGAACAAAATGCAAGAAGACAT
TTGGCAATTGAACGTTTAGATAAATTAAAGAATGGACTTTCATCAAATCTCCTTTTATTA
CAAAATCCTATAATAAATAAACATTTAATCTATTCACTTATTGACGTTTTAATAATTGAA
GGTTTTAATGAACTCAATCCGAATCTTATGCCAAAGTGA
>g6184.t1 Gene=g6184 Length=692
MTILQLSLIFKDSIALKTFILAVILITLSCIYSLSLGIYFGLFFIISLTFVVFFNQSSTT
RNHLQEIVESFLKSDNETKSSSNDDKIFLAKGLDETLERFFTRLLDNVFKSWWSNVSSDE
TFLYTLKLELTRALRKLALRYKNVDYPVLISTKLLPIVYSHFSQIEHLMKTKETREQQIK
SFLEIQSPHPATLNRKAELQYLRSLSENLMPYLFSKNNYKCRAAYNIVRELLTNWVFLQI
TDLIAEPDIINMLVILATNKSTTAIKELNDKTQVELLANFIKINENKAIGSDQRVDNNFF
KDQEKLYNFMQYLKSQNCNDVEILKFVLDVEHLNAELEKSSVILDPVKLSSLQQTSEKLL
TLYRDNLFKGEENEKPSDLIKCYDHAKKHLEYKWKFDFYKSGDYYKYIYGDREIYNTSKE
EKEEQITETISTQKLSAKIKNAMTMKIAVDGIEDDIQVYDAIDAGSISPFHYYNSMAVKL
RKERGQDLDNFMVTFFNSIEQEGDIGEDIASKTHSKSEKEKQHDKIKLGNIELYKNLFNT
TGQSNAQLMTISYVKNPTQSLIYFLAKIVKFHETFLRLIVGILNFFPHSDKLVLMSIRKI
CEKLVNQAILSHLICELEEKLFDSKPTHRSTQEEQNARRHLAIERLDKLKNGLSSNLLLL
QNPIINKHLIYSLIDVLIIEGFNELNPNLMPK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g6184.t1 | PANTHER | PTHR22775:SF44 | SORTING NEXIN-14 | 14 | 453 | 1.7E-59 |
| 5 | g6184.t1 | PANTHER | PTHR22775 | SORTING NEXIN | 14 | 453 | 1.7E-59 |
| 2 | g6184.t1 | PANTHER | PTHR22775:SF44 | SORTING NEXIN-14 | 417 | 686 | 1.7E-59 |
| 4 | g6184.t1 | PANTHER | PTHR22775 | SORTING NEXIN | 417 | 686 | 1.7E-59 |
| 1 | g6184.t1 | Pfam | PF02194 | PXA domain | 93 | 255 | 2.4E-28 |
| 10 | g6184.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 20 | - |
| 12 | g6184.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 54 | - |
| 11 | g6184.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 55 | 692 | - |
| 9 | g6184.t1 | ProSiteProfiles | PS51207 | PXA domain profile. | 90 | 261 | 25.4 |
| 8 | g6184.t1 | SMART | SM00313 | PXA_3 | 90 | 262 | 2.6E-14 |
| 7 | g6184.t1 | SUPERFAMILY | SSF48097 | Regulator of G-protein signaling, RGS | 299 | 408 | 9.92E-5 |
| 6 | g6184.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 43 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
