Gene loci information

Transcript annotation

  • This transcript has been annotated as histone-arginine N-methyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g619 g619.t2 TTS g619.t2 4534214 4534214
chr_3 g619 g619.t2 isoform g619.t2 4534396 4535914
chr_3 g619 g619.t2 exon g619.t2.exon1 4534396 4534485
chr_3 g619 g619.t2 cds g619.t2.CDS1 4534396 4534485
chr_3 g619 g619.t2 exon g619.t2.exon2 4534562 4535106
chr_3 g619 g619.t2 cds g619.t2.CDS2 4534562 4535106
chr_3 g619 g619.t2 exon g619.t2.exon3 4535166 4535914
chr_3 g619 g619.t2 cds g619.t2.CDS3 4535166 4535592
chr_3 g619 g619.t2 TSS g619.t2 4536066 4536066

Sequences

>g619.t2 Gene=g619 Length=1384
ATGGTAAGTGAAGAATCAAATATTGACTTTGTGACTCAATTATCACAAACAATTTATGCC
GGTTTTTATCAAATAAGTATGCCTCTTTTTGATAAACCATTTATTCTTAAATAATATTAT
TGATGACAACGATAAATTAAATTATCCAATGATTTTCGAGCATTTTAAATTTAATTTTTT
GAGGTTAATACTAGTAAATGCTTGTATGTAAATGCATCGCCATCATTCATGTACTTCTTT
TTCTTTTGATAGCTAATTTAAATATAATATTCATAAATCATTTCTTTATGTTACGTTTTT
CTTTTAGAGTGACTCACAACCAATGGAAATTTCAAATGAAAATGGAACACACAATCAAAA
AGAAAAGGCATCAATCAAAAATCAATCACCTGAAGAAATGACAAGTCGCGACTATTACTT
TGATAGTTATGCTCATTTTGGAATACATGAAGAAATGCTAAAAGACGAAGTCAGAACTAT
GACATACAGGAATGCAATGTATCACAATAAACATTTGTTCAAAGGCAAAACTGTGGTCGA
TGTAGGTTGCGGCACTGGAATACTTTCAATGTTTGCAGCAAAAGCAGGAGCAGCACGAGT
TTTTGCCATCGAGTGCTCAAATATTGCAGATTATGCTACAAAAATTATTGCCGAAAATAA
GCTTGATCATATTATTACATTGGTCAAAGGCAAAGTTGAGGAAGTTGTTTTACCTGATGG
CATTGAAAAAGTCGATATTATCATCTCCGAATGGATGGGATATTGCTTGTTTTATGAATC
TATGCTTGATACGGTTCTTTTTGCTCGAGACAAATGGTTGGATAAACAAAATGGAATGAT
GTTTCCTGACAAATGCACATTATATGTGACTTCGATTGAAGATCGTCAATATAAGGATGA
GAAAATTAATTGGTGGGACGATGTTTACGGTTTTAATATGTCTCATATTCGAAAAGTTGC
TATAAGTGAACCACTTGTGGACGTAGTTGATCAGAAACAAGTTGTCACAAATTCTTATCT
TGTAAAAGAAATTGACTTGTATACCGTACAAAAAGAAGATCTTGCATTTACCAGTGACTT
CCATTTAGTTGTTAAACGAAATGATTTTATTCAAGCATTAGTAACTTATTTCAATGTCGA
GTTTACCAAGTGCCACAAACGACTCGGTTTCTCAACAAGTCCCGATGCTCCATATACTCA
CTGGAAACAAACAGTATTTTACTTAGACGACTATATTACAGCTAAAAAGGGTGAAGAGAT
ATTTGGAACTTTTTCCATGCAACCAAATGAAAAGAACAATCGAGACTTGGATTTCACAAT
AAAAATTATATTCAATGGCGAGTTGTCACAAATCAAAGAAGAAAATATGTATAGAATGCG
CTAA

>g619.t2 Gene=g619 Length=353
MEISNENGTHNQKEKASIKNQSPEEMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNAMY
HNKHLFKGKTVVDVGCGTGILSMFAAKAGAARVFAIECSNIADYATKIIAENKLDHIITL
VKGKVEEVVLPDGIEKVDIIISEWMGYCLFYESMLDTVLFARDKWLDKQNGMMFPDKCTL
YVTSIEDRQYKDEKINWWDDVYGFNMSHIRKVAISEPLVDVVDQKQVVTNSYLVKEIDLY
TVQKEDLAFTSDFHLVVKRNDFIQALVTYFNVEFTKCHKRLGFSTSPDAPYTHWKQTVFY
LDDYITAKKGEEIFGTFSMQPNEKNNRDLDFTIKIIFNGELSQIKEENMYRMR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g619.t2 CDD cd02440 AdoMet_MTases 70 142 2.13691E-11
7 g619.t2 Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 20 175 1.9E-63
6 g619.t2 Gene3D G3DSA:2.70.160.11 - 177 353 1.1E-66
5 g619.t2 MobiDBLite mobidb-lite consensus disorder prediction 1 23 -
2 g619.t2 PANTHER PTHR11006 PROTEIN ARGININE N-METHYLTRANSFERASE 19 353 2.4E-174
3 g619.t2 PANTHER PTHR11006:SF47 PROTEIN ARGININE N-METHYLTRANSFERASE 8 19 353 2.4E-174
1 g619.t2 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 65 142 1.0E-9
8 g619.t2 ProSiteProfiles PS51678 SAM-dependent methyltransferase PRMT-type domain profile. 29 334 91.575
4 g619.t2 SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases 35 352 1.99E-92

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016274 protein-arginine N-methyltransferase activity MF
GO:0018216 peptidyl-arginine methylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values