General information for g6194.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Actin-related protein 2/3 complex subunit 5-C.
Parent gene
- The parent gene g6194 is located on chr_2: 15180719..15181352 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6194 | g6194.t1 | TTS | g6194.t1 | 15180595 | 15180595 |
| chr_2 | g6194 | g6194.t1 | isoform | g6194.t1 | 15180719 | 15181171 |
| chr_2 | g6194 | g6194.t1 | exon | g6194.t1.exon1 | 15180719 | 15181171 |
| chr_2 | g6194 | g6194.t1 | cds | g6194.t1.CDS1 | 15180719 | 15181171 |
| chr_2 | g6194 | g6194.t1 | TSS | g6194.t1 | 15181327 | 15181327 |
Sequences
>g6194.t1 Gene=g6194 Length=453
ATGGCAAAAAATACATCAAGTTCGGCATTTCGTAAAATTGATGTTGATCAATATAATGAA
GACAATTTTAAGGACGATGAACAGGAGAATCAGCCATTGGGAGGTATTGATGAGGGTGAA
ATTAATCAACTTCTCCTAAAACAAAAGAATAATGATGCTCTCAAAAAGTGTTTAGAAAAC
GCCCCAATTTTCAGCAAAAATCAACAATCGAAAGATCAGGCATTACAAGTGATTCTGAGA
GTGCTTCTATCGATTAAGCCATCACAAATTGATAGCGCTATCGAGATTCTTGATGCTGAA
TTGATTGATACACTAATGAAATATATTTATCGTGGATTCGAATTTCCCAATGAAGGTTCA
AGTGGACATTTACTGCAATGGCATGAGAAAGTATTTGCAAAAGCCGGAGTTGGTTCAATT
GTGAGAGTTTTAACAGATACTGCAAGAGCGTAA
>g6194.t1 Gene=g6194 Length=150
MAKNTSSSAFRKIDVDQYNEDNFKDDEQENQPLGGIDEGEINQLLLKQKNNDALKKCLEN
APIFSKNQQSKDQALQVILRVLLSIKPSQIDSAIEILDAELIDTLMKYIYRGFEFPNEGS
SGHLLQWHEKVFAKAGVGSIVRVLTDTARA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g6194.t1 | Gene3D | G3DSA:1.25.40.190 | - | 1 | 149 | 1.4E-51 |
| 5 | g6194.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - |
| 6 | g6194.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 31 | - |
| 2 | g6194.t1 | PANTHER | PTHR12644 | ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARC | 1 | 146 | 2.1E-43 |
| 3 | g6194.t1 | PANTHER | PTHR12644:SF2 | ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 5-LIKE PROTEIN | 1 | 146 | 2.1E-43 |
| 8 | g6194.t1 | PIRSF | PIRSF039096 | p16-ARC | 5 | 150 | 1.2E-44 |
| 1 | g6194.t1 | Pfam | PF04699 | ARP2/3 complex 16 kDa subunit (p16-Arc) | 9 | 148 | 9.3E-47 |
| 4 | g6194.t1 | SUPERFAMILY | SSF69103 | Arp2/3 complex 16 kDa subunit ARPC5 | 9 | 147 | 1.44E-46 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0030833 | regulation of actin filament polymerization | BP |
| GO:0005885 | Arp2/3 protein complex | CC |
| GO:0034314 | Arp2/3 complex-mediated actin nucleation | BP |
| GO:0015629 | actin cytoskeleton | CC |
KEGG
Orthology
- This transcript has been annotated with K05754 (actin related protein 2/3 complex, subunit 5)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
