General information for g6199.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6199 is located on chr_2: 15237598..15239069 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6199 | g6199.t1 | isoform | g6199.t1 | 15237598 | 15239069 |
| chr_2 | g6199 | g6199.t1 | exon | g6199.t1.exon1 | 15237598 | 15237661 |
| chr_2 | g6199 | g6199.t1 | cds | g6199.t1.CDS1 | 15237598 | 15237661 |
| chr_2 | g6199 | g6199.t1 | exon | g6199.t1.exon2 | 15237934 | 15239069 |
| chr_2 | g6199 | g6199.t1 | cds | g6199.t1.CDS2 | 15237934 | 15239069 |
| chr_2 | g6199 | g6199.t1 | TSS | g6199.t1 | NA | NA |
| chr_2 | g6199 | g6199.t1 | TTS | g6199.t1 | NA | NA |
Sequences
>g6199.t1 Gene=g6199 Length=1200
ATGCAAAAACAACTTTTGCAAATTGCGGACAGAATTCCTGATGACATTCTCTTAACACTT
TTGAAATGTTTTGCAAAACTTTTAACTTGTGAATCAGAGCAGACGACAAAATCGAGTGGT
CCATTTATAAGAGCATTCGCTAAAATACGTGATGATGGTGAGAGGCAATTCTCAGTTATA
GCAGAGGAAGATGAAGATCAAAAGATAAACGAACAAACAGCAACAGAAGTAGCCGATGAA
GGCGATAATGAGTGTACATTTAATTATAAAATTACTAATGTTGTTACACAAGAGGTTTTA
TATTCGATGGGCAATAATGAAGATGATAATGTTAAAAATGAGATTGATGAAAATCAACAA
CAGCAAACACAACAAGATGATGATCAAGAAATTATTGAATCATTGCAAAATGCAGAAGAA
AATACTGCTGATGTTGTTGCTACTTCTGATGATGATGAAAATAATAATAATAATATTGAT
GAAGAAGAAAAAGAAAATGTTGAAAGTGTCAACAATGAAATAACTGAAGTCGAAATAGAA
GAAGTCGAACCTGAAATTGAAAAGATTAACAATGATATCAGTAGTAATAATGACAGCGAC
TATGATGATGACCAAATAGTTGAGAATATTGAAAAAGAAATAGACGGTGACTCAGTCGAG
AGTGAGAAACCGCAAATCGATGATGATGAAAGGGAGAACATTCAACCACTCGAAAAAGTC
TCCTTGGATGACATTCAAAGAGAAATCCAAGAAATGCAAATGTTTCTTTTTAATAAAGGC
ATAACACAGGAAAATAAAAGTCAAAGTAACATAAATCATGAGCTGATTACGGCAGAAAAG
TCGCAGGCAAAAGTTGAAGACGGTTATAAAGTTGATGTCTGCATAAATCTTAAGAAAAAA
AGCAGTGAAAGGAAACATACAAAATCAAAGGCAATTTTATCGAACTACATTAATAAAGAC
TCACATATGAATGGTGACAATCGTAATCACATCTTTGATCCAAGCGTCCCAAACACTCCG
GAAGACTTTTTAAAAGAAAAGTCCGTTACCGAAAAGATAAACAAAAAGAAGCAAAAAATC
AAACATCTCGACATGTCTTGGCAGAAATTGTGCGACGATCAGAAGAAAGTCTACAAACAT
TCAAATTTCAAGATACCAAAGGCGGAAAGAAGCATAGTCGATGAGCAAAAGAATATTTAA
>g6199.t1 Gene=g6199 Length=399
MQKQLLQIADRIPDDILLTLLKCFAKLLTCESEQTTKSSGPFIRAFAKIRDDGERQFSVI
AEEDEDQKINEQTATEVADEGDNECTFNYKITNVVTQEVLYSMGNNEDDNVKNEIDENQQ
QQTQQDDDQEIIESLQNAEENTADVVATSDDDENNNNNIDEEEKENVESVNNEITEVEIE
EVEPEIEKINNDISSNNDSDYDDDQIVENIEKEIDGDSVESEKPQIDDDERENIQPLEKV
SLDDIQREIQEMQMFLFNKGITQENKSQSNINHELITAEKSQAKVEDGYKVDVCINLKKK
SSERKHTKSKAILSNYINKDSHMNGDNRNHIFDPSVPNTPEDFLKEKSVTEKINKKKQKI
KHLDMSWQKLCDDQKKVYKHSNFKIPKAERSIVDEQKNI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g6199.t1 | Coils | Coil | Coil | 160 | 180 | - |
| 1 | g6199.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 170 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed